Metagenome Family F088254

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088254
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	MNEKILKEILQELKNIHFHLDNLEVFYKFVNRVEMKKEEIAEDKK
Number of Associated Samples	52
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	86.24 %
% of genes near scaffold ends (potentially truncated)	12.84 %
% of genes from short scaffolds (< 2000 bps)	86.24 %
Associated GOLD sequencing projects	47
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (88.991 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (19.266 % of family members)
Environment Ontology (ENVO)	Unclassified (20.183 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (47.706 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.53% β-sheet: 0.00% Coil/Unstructured: 42.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07460	NUMOD3	4.59
PF14279	HNH_5	1.83
PF00085	Thioredoxin	1.83
PF13614	AAA_31	0.92
PF02511	Thy1	0.92
PF04473	DUF553	0.92
PF12728	HTH_17	0.92
PF01844	HNH	0.92
PF04002	RadC	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.92
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.99 %
All Organisms	root	All Organisms	11.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.99 %
cellular organisms	root	All Organisms → cellular organisms	10.09 %
Viruses	superkingdom	All Organisms → Viruses	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.99 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.99 %
Atribacterota	phylum	All Organisms → cellular organisms → Bacteria → Atribacterota	5.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.99 %
unclassified Atribacterota	no rank	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota	4.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.99 %
Candidatus Atribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	3.67 %
Candidatus Atribacteria bacterium HGW-Atribacteria-1	species	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium HGW-Atribacteria-1	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003141\|Ga0052246_1006166	Not Available	1507	Open in IMG/M
3300003144\|Ga0052244_1006977	Not Available	1267	Open in IMG/M
3300005236\|Ga0066636_10152799	Not Available	1088	Open in IMG/M
3300005915\|Ga0075122_10008741	All Organisms → cellular organisms → Bacteria	5525	Open in IMG/M
3300005915\|Ga0075122_10109224	Not Available	1056	Open in IMG/M
3300005918\|Ga0075116_10049370	Not Available	1739	Open in IMG/M
3300005918\|Ga0075116_10319277	Not Available	562	Open in IMG/M
3300005935\|Ga0075125_10041492	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	2089	Open in IMG/M
3300005935\|Ga0075125_10233654	Not Available	746	Open in IMG/M
3300005935\|Ga0075125_10249264	Not Available	716	Open in IMG/M
3300005936\|Ga0075124_10052863	Not Available	1649	Open in IMG/M
3300005936\|Ga0075124_10172136	Not Available	802	Open in IMG/M
3300005936\|Ga0075124_10321728	Not Available	546	Open in IMG/M
3300005939\|Ga0075123_10316870	Not Available	572	Open in IMG/M
3300008085\|Ga0100378_1275750	Not Available	799	Open in IMG/M
3300008095\|Ga0100392_1226027	Not Available	927	Open in IMG/M
3300008255\|Ga0100403_1112306	Not Available	1044	Open in IMG/M
3300008255\|Ga0100403_1215882	Not Available	670	Open in IMG/M
3300008255\|Ga0100403_1261990	Not Available	589	Open in IMG/M
3300008470\|Ga0115371_10625800	Not Available	619	Open in IMG/M
3300008470\|Ga0115371_10866924	Not Available	1698	Open in IMG/M
3300008470\|Ga0115371_10882539	Not Available	753	Open in IMG/M
3300008470\|Ga0115371_10914920	All Organisms → Viruses → Predicted Viral	1262	Open in IMG/M
3300009004\|Ga0100377_1201152	Not Available	780	Open in IMG/M
3300009149\|Ga0114918_10102414	Not Available	1777	Open in IMG/M
3300009149\|Ga0114918_10109658	Not Available	1700	Open in IMG/M
3300009149\|Ga0114918_10227878	Not Available	1069	Open in IMG/M
3300009529\|Ga0114919_10883650	Not Available	604	Open in IMG/M
3300009529\|Ga0114919_11213267	Not Available	503	Open in IMG/M
3300013086\|Ga0163202_1008099	Not Available	1971	Open in IMG/M
3300013101\|Ga0164313_11072907	Not Available	654	Open in IMG/M
3300014613\|Ga0180008_1420893	Not Available	503	Open in IMG/M
3300014656\|Ga0180007_10038152	Not Available	3566	Open in IMG/M
3300014656\|Ga0180007_10223973	Not Available	1187	Open in IMG/M
3300014656\|Ga0180007_10385195	Not Available	855	Open in IMG/M
3300015370\|Ga0180009_10163687	Not Available	1048	Open in IMG/M
3300015370\|Ga0180009_10301106	Not Available	668	Open in IMG/M
3300020171\|Ga0180732_1044125	Not Available	1492	Open in IMG/M
3300020171\|Ga0180732_1066688	Not Available	1153	Open in IMG/M
3300020171\|Ga0180732_1100643	Not Available	895	Open in IMG/M
3300020171\|Ga0180732_1211266	Not Available	577	Open in IMG/M
3300022553\|Ga0212124_10234790	Not Available	985	Open in IMG/M
3300022858\|Ga0222679_1000434	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	14968	Open in IMG/M
3300022874\|Ga0222685_1007793	Not Available	2362	Open in IMG/M
3300023061\|Ga0222700_1073911	Not Available	544	Open in IMG/M
3300023256\|Ga0222703_1047020	Not Available	804	Open in IMG/M
3300023295\|Ga0222684_1045269	Not Available	786	Open in IMG/M
3300023295\|Ga0222684_1089214	Not Available	519	Open in IMG/M
3300024262\|Ga0210003_1002912	All Organisms → cellular organisms → Bacteria → Atribacterota	14178	Open in IMG/M
3300024262\|Ga0210003_1091401	Not Available	1405	Open in IMG/M
3300025018\|Ga0210043_1142064	Not Available	663	Open in IMG/M
3300025022\|Ga0210056_1124571	Not Available	981	Open in IMG/M
3300025036\|Ga0210049_1082146	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	1699	Open in IMG/M
3300025661\|Ga0208905_1043302	Not Available	1535	Open in IMG/M
3300025661\|Ga0208905_1083576	Not Available	986	Open in IMG/M
3300025661\|Ga0208905_1173484	Not Available	592	Open in IMG/M
3300025661\|Ga0208905_1203260	Not Available	528	Open in IMG/M
3300025736\|Ga0207997_1059552	Not Available	1364	Open in IMG/M
3300025736\|Ga0207997_1099136	Not Available	976	Open in IMG/M
3300025811\|Ga0210004_1058784	Not Available	1193	Open in IMG/M
3300025868\|Ga0210051_1203056	Not Available	899	Open in IMG/M
3300031227\|Ga0307928_10159749	Not Available	1243	Open in IMG/M
3300031227\|Ga0307928_10281094	Not Available	835	Open in IMG/M
3300031227\|Ga0307928_10314564	Not Available	769	Open in IMG/M
3300031227\|Ga0307928_10324053	Not Available	752	Open in IMG/M
3300031227\|Ga0307928_10386637	Not Available	660	Open in IMG/M
3300031351\|Ga0307427_1074210	Not Available	875	Open in IMG/M
3300031379\|Ga0307434_1021419	Not Available	2230	Open in IMG/M
3300031379\|Ga0307434_1034718	Not Available	1658	Open in IMG/M
3300031379\|Ga0307434_1092645	Not Available	877	Open in IMG/M
3300031539\|Ga0307380_10013535	All Organisms → cellular organisms → Bacteria	10070	Open in IMG/M
3300031539\|Ga0307380_10200829	Not Available	1926	Open in IMG/M
3300031539\|Ga0307380_10677943	Not Available	873	Open in IMG/M
3300031539\|Ga0307380_10996685	Not Available	669	Open in IMG/M
3300031539\|Ga0307380_11091262	Not Available	629	Open in IMG/M
3300031565\|Ga0307379_11033782	Not Available	697	Open in IMG/M
3300031565\|Ga0307379_11441276	Not Available	553	Open in IMG/M
3300031566\|Ga0307378_10549895	Not Available	1024	Open in IMG/M
3300031566\|Ga0307378_10600251	Not Available	966	Open in IMG/M
3300031566\|Ga0307378_11185565	Not Available	606	Open in IMG/M
3300031578\|Ga0307376_10011240	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	7461	Open in IMG/M
3300031578\|Ga0307376_10319260	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300031578\|Ga0307376_10568731	Not Available	725	Open in IMG/M
3300031669\|Ga0307375_10697365	Not Available	585	Open in IMG/M
3300031673\|Ga0307377_10308146	Not Available	1198	Open in IMG/M
3300031673\|Ga0307377_10583699	Not Available	802	Open in IMG/M
3300031673\|Ga0307377_10782500	Not Available	662	Open in IMG/M
3300031673\|Ga0307377_10949218	Not Available	582	Open in IMG/M
3300031746\|Ga0315293_10000330	All Organisms → cellular organisms → Bacteria	42865	Open in IMG/M
3300031772\|Ga0315288_10022113	Not Available	7873	Open in IMG/M
3300031772\|Ga0315288_10044802	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium HGW-Atribacteria-1	5307	Open in IMG/M
3300031772\|Ga0315288_10417386	Not Available	1353	Open in IMG/M
3300031772\|Ga0315288_10924947	Not Available	787	Open in IMG/M
3300031885\|Ga0315285_10223140	Not Available	1481	Open in IMG/M
3300031885\|Ga0315285_10322518	Not Available	1145	Open in IMG/M
3300031885\|Ga0315285_10419110	Not Available	950	Open in IMG/M
3300031952\|Ga0315294_10465650	Not Available	1165	Open in IMG/M
3300031999\|Ga0315274_10009798	Not Available	13815	Open in IMG/M
3300031999\|Ga0315274_10493187	Not Available	1388	Open in IMG/M
3300031999\|Ga0315274_10833403	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300032020\|Ga0315296_10010498	Not Available	7034	Open in IMG/M
3300032020\|Ga0315296_10216671	Not Available	1134	Open in IMG/M
3300032020\|Ga0315296_10268972	Not Available	982	Open in IMG/M
3300032020\|Ga0315296_10511113	Not Available	633	Open in IMG/M
3300032020\|Ga0315296_10544899	Not Available	605	Open in IMG/M
3300032046\|Ga0315289_10126136	Not Available	2941	Open in IMG/M
3300032046\|Ga0315289_10412562	Not Available	1337	Open in IMG/M
3300032156\|Ga0315295_11347322	Not Available	694	Open in IMG/M
3300032156\|Ga0315295_11765850	Not Available	588	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	83.49%
Terrestrial	Environmental → Terrestrial	16.51%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	41.28%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	25.69%
Soil	Environmental → Terrestrial → Soil	16.51%
Marine	Environmental → Aquatic → Marine	12.84%
Sediment	Environmental → Aquatic → Sediment	3.67%

Habitat	Taxonomy	Distribution
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	25.69%
Lake	Environmental → Aquatic → Freshwater → Lake	21.10%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	20.18%
Clay	Environmental → Terrestrial → Soil → Clay	16.51%
Oceanic	Environmental → Aquatic → Marine → Oceanic	6.42%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.83%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	25.69%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	20.18%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	19.27%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	16.51%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	6.42%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.83%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	0.92%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	19.27%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	16.51%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	13.76%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	10.09%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	7.34%
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	6.42%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	6.42%
Lake Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water	6.42%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.67%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	3.67%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.83%
Marine Sediment	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment	1.83%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	1.83%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003141	Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf	Environmental	Open in IMG/M
3300003144	Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsf	Environmental	Open in IMG/M
3300005236	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80	Environmental	Open in IMG/M
3300005915	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB	Environmental	Open in IMG/M
3300005918	Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC	Environmental	Open in IMG/M
3300005935	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN	Environmental	Open in IMG/M
3300005936	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS	Environmental	Open in IMG/M
3300005939	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX	Environmental	Open in IMG/M
3300008085	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-02	Environmental	Open in IMG/M
3300008095	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-16	Environmental	Open in IMG/M
3300008255	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t	Environmental	Open in IMG/M
3300008470	Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563	Environmental	Open in IMG/M
3300009004	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300013086	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_300m	Environmental	Open in IMG/M
3300013101	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cm	Environmental	Open in IMG/M
3300014613	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG	Environmental	Open in IMG/M
3300014656	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG	Environmental	Open in IMG/M
3300015370	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG	Environmental	Open in IMG/M
3300020171	Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG	Environmental	Open in IMG/M
3300022553	Powell_combined assembly	Environmental	Open in IMG/M
3300022858	Saline water microbial communities from Ace Lake, Antarctica - #939	Environmental	Open in IMG/M
3300022874	Saline water microbial communities from Ace Lake, Antarctica - #1077	Environmental	Open in IMG/M
3300023061	Saline water microbial communities from Ace Lake, Antarctica - #1454	Environmental	Open in IMG/M
3300023256	Saline water microbial communities from Ace Lake, Antarctica - #1506	Environmental	Open in IMG/M
3300023295	Saline water microbial communities from Ace Lake, Antarctica - #1075	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300025018	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)	Environmental	Open in IMG/M
3300025022	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes)	Environmental	Open in IMG/M
3300025036	Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)	Environmental	Open in IMG/M
3300025661	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS (SPAdes)	Environmental	Open in IMG/M
3300025736	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)	Environmental	Open in IMG/M
3300025811	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (SPAdes)	Environmental	Open in IMG/M
3300025868	Groundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all (SPAdes)	Environmental	Open in IMG/M
3300031227	Saline water microbial communities from Ace Lake, Antarctica - #232	Environmental	Open in IMG/M
3300031351	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-190	Environmental	Open in IMG/M
3300031379	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031673	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032020	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0052246_10061662	3300003141	Marine Sediment	MNEKILKEILQELKDIHFHLDELSIFYKFVNRVEMKKEEVKKEIVEDKK*
Ga0052244_10069772	3300003144	Marine Sediment	MNEKILKEILQELKAIHFHLDELSIFYKFVNRVEMKKEEVKKEIVEDKK*
Ga0066636_101527991	3300005236	Groundwater	MNEKILAEILQEFKNIHFHLNNLETLYKFTNKVEIRKENTTENKK*
Ga0075122_100087415	3300005915	Saline Lake	MNEKILKEILQELKEIHDHLNNIEVLYKFTNRVEMKKEEVPKDKKE*
Ga0075122_101092241	3300005915	Saline Lake	MNEKILKEILQELKNIHCHLDRLDIGYMMVNRIEIKEKEKPEDKKE*
Ga0075116_100493702	3300005918	Saline Lake	MSEKILNEILQELKGIHDHLNIIETLYKYVNRVEMKKEEVPKDKK*
Ga0075116_103192772	3300005918	Saline Lake	MSEKILKEILQELKEIHDHLNNLEVLYKFTNRVEMKKEEVPKDKKE*
Ga0075125_100414923	3300005935	Saline Lake	MNEKILKEILQELKGIHDHLNIIETLYKYVNRVEMKKEEVPKNKK*
Ga0075125_102336541	3300005935	Saline Lake	MEKILKEILQELKGIHDHLNIIETLYKYVNRVEIKKED
Ga0075125_102492642	3300005935	Saline Lake	MNEKILEEILQEIKNVHHHLENIETLYKFTNRVEIKKEVEKKEITEDKK*
Ga0075124_100528632	3300005936	Lake Water	MNEKILKEILEELKEIHDHLNTFEALYKFVNRVEMKKEEVPKDKK*
Ga0075124_101721361	3300005936	Lake Water	MSEKILNEILQELKGIHDHLNIIETLYKYVNRVEMKKEEVPK
Ga0075124_103217282	3300005936	Lake Water	MEKILKEILQELKNIHCHLDNLETLYKFTNRVEMKKEEVPKDKK*
Ga0075123_103168701	3300005939	Saline Lake	MNEKILKEILQELKEIHSHLNNLETLYKFTNRVEMKKEEVPKDKKE*
Ga0100378_12757502	3300008085	Aquifer	MNEKILAEILQELKNIHFHLDNLEVFYKFVNRVEMKKEETTEDKK*
Ga0100392_12260272	3300008095	Aquifer	MNEEILKEILQELKNIHFHLDNLETLYKFTNKVEIRKENTTENKK*
Ga0100403_11123062	3300008255	Aquifer	MNEKILAEILQELKNIHFHLDNLEVFYKFVNRVEMKKEETTENKK*
Ga0100403_12158822	3300008255	Aquifer	MNGKILKEILQELKDIHYHLDCLETFYKFVNRVEMKKEITQ*
Ga0100403_12619901	3300008255	Aquifer	MNEKILKEILQELKNIHFHLDNLEVFYKFVNRVEMKKEEIAEDKK*
Ga0115371_106258001	3300008470	Sediment	MDEKILKELLQELKEIHDHLNNLESLYKFTNRVEMKKEEVPKDKKE*
Ga0115371_108669242	3300008470	Sediment	MDEKILKEILQELKNIHFHLDNMETLYKFTNRVEIKKEEVPEDKKE*
Ga0115371_108825392	3300008470	Sediment	MNEKIFKEILEELKNVHHHLENIETLYKFTNRVEMKKEENKEDENPQ*
Ga0115371_109149202	3300008470	Sediment	MEKILKEILEELKNIHYHLDGLETLYKFVNRVEMKKEEVKEEIVKDKKE*
Ga0100377_12011522	3300009004	Aquifer	MNEEILKEILQELKNIHFHLDNLEVFYKFVNRVEMKKEETTEDKK*
Ga0114918_101024143	3300009149	Deep Subsurface	MNDELLKEILQELKNIHFHLDNLETLYKFTNRVEIKKEEIKEDKK*
Ga0114918_101096583	3300009149	Deep Subsurface	MNEKILREILQELKNIHFHLGNLESLYKFTNRVEMKKEEIPKDKIKDKK*
Ga0114918_102278782	3300009149	Deep Subsurface	MNEKILKEILEELKNIHSHLDNFEVFYKFVNRVEMKKGEITKDKK*
Ga0114919_108836501	3300009529	Deep Subsurface	MNEKILREILEELKNIHFHLDNLESLYKFTNRVEMKGETKKEIKGKEIIEDKK*
Ga0114919_112132671	3300009529	Deep Subsurface	MEEILREILEELKNIHSHLDNFEVFYKFVNRVEMKGETKKEIKEKEIIEDKK*
Ga0163202_10080993	3300013086	Freshwater	MEKLLKEILQEIKDIHSHLNDLDSLYKFVNRVEMKKEEIKVEK*
Ga0164313_110729071	3300013101	Marine Sediment	MNEKILKEILQELKNIHYHLDNLETLYKFTNRVEIKKEEIKEDKK*
Ga0180008_14208932	3300014613	Groundwater	MEEILKEILQELKNIHSHLETLESFYMFVNRVEMKKEEIPENKK*
Ga0180007_100381521	3300014656	Groundwater	MEELLKEILQELKDMHSHLDNLESLYKFTNRVEMKKEEVKKEIVEDKK
Ga0180007_102239732	3300014656	Groundwater	MEKILKEILQEIKDIHSHLNDLDSLYKFVNRVEMKKEEIKEDKK*
Ga0180007_103851952	3300014656	Groundwater	MNEKILKEILKELKNIHYHLDRLDAFYIMVNKIEIKENEIVEDKK*
Ga0180009_101636873	3300015370	Groundwater	MSEKILKEILEELKNIHSHLNNLETFYMYVNRVEMKKEEITEDKK*
Ga0180009_103011062	3300015370	Groundwater	MKDELLKEILQELKDMHSHLDNLESLYKFTNRVEIKKEEVKKEIVEDKK*
Ga0180732_10441252	3300020171	Groundwater	MEELLKEILQEIKDIHSHLNDLDSLYKFVNRVEMKKEEIKVEK
Ga0180732_10666882	3300020171	Groundwater	MEELLKEILGELKNIHYHLEQQLDFYRFVNRVEMKKEEIKEDKK
Ga0180732_11006433	3300020171	Groundwater	MNEEILKEILQELKDMHSHLDNLETLYKFTNRVEIKK
Ga0180732_12112661	3300020171	Groundwater	MDNNLLKEILEELRNIHNHLNNLETFYMFVNRVEMKKEEVKKEIIEDKK
Ga0212124_102347902	3300022553	Freshwater	MEKLLKEILQEIKDIHSHLNDLDSLYKFVNRVEMKKEEIKVEK
Ga0222679_10004343	3300022858	Saline Water	MNEKILKEILQELKEIHDHLNNIEVLYKFTNRVEMKKEEVPKDKKE
Ga0222685_10077931	3300022874	Saline Water	MNEKILKEILQELKGIHDHLNIIETLYKYVNRVEMKKEEVPKDKK
Ga0222700_10739112	3300023061	Saline Water	MSEKILNEILQELKGIHDHLNIIETLYKYVNRVEMKKEEVPKDKK
Ga0222703_10470202	3300023256	Saline Water	MEKLLKEILEELKNVHHHLENIETLYKFTNRVEIKKEVEKKEITEDKK
Ga0222684_10452692	3300023295	Saline Water	VLKEEGGKQMNEKILKEILEELKEIHDHLNTFEALYKFVNRVEMKKEEVPKGKKE
Ga0222684_10892142	3300023295	Saline Water	MEKILKEILQELKNIHCHLDNLETLYKFTNRVEMKKEEVPKDKK
Ga0210003_100291216	3300024262	Deep Subsurface	MNDELLKEILQELKNIHFHLDNLETLYKFTNRVEIKKEEIKEDKK
Ga0210003_10914012	3300024262	Deep Subsurface	MNEKILREILQELKNIHFHLGNLESLYKFTNRVEMKKEEIPKDKIKDKK
Ga0210043_11420642	3300025018	Aquifer	MNEEILKEILQELKNIHFHLDNLETLYKFTNKVEIRKENTTENKK
Ga0210056_11245713	3300025022	Groundwater	MNEKILAEILQELKNIHFHLDNLEVFYKFVNRVEMKKEETTENKK
Ga0210049_10821463	3300025036	Groundwater	MNEKILKEILQELKDIHFHLDNLEVFYKFVNRVEMKKEETTENKK
Ga0208905_10433022	3300025661	Lake Water	MNEKILKEILEELKEIHDHLNTFEALYKFVNRVEMKKEEVPKGKKE
Ga0208905_10835761	3300025661	Lake Water	LQEVKGIHDHLNNLETLYKFVNRVEMKKEEVKEEVPKDKKGFEKSK
Ga0208905_11734841	3300025661	Lake Water	MSEKILNEILQELKGIHDHLNIIETLYKYVNRVEMKKEEVPKNKKXRVLVIE
Ga0208905_12032602	3300025661	Lake Water	MNEKILKEILQELKGIHDHLNIIETLYKYVNRVEMKKEEVPKNKK
Ga0207997_10595523	3300025736	Saline Lake	MNEKILEEILQEIKNVHHHLENIETLYKFTNRVEIKKEVEKKEITEDKK
Ga0207997_10991362	3300025736	Saline Lake	MSEKILKEILQELKEIHDHLNNLEVLYKFTNRVEMKKEEVPKDKKE
Ga0210004_10587842	3300025811	Groundwater	MNEKILAEILQELKNIHFHLDNLEVFYKFVNRVEMKKKEITEEKIRK
Ga0210051_12030562	3300025868	Groundwater	MNEEILKEILQELKNIHFHLDNLEVFYKFVNRVEMKKEETTEDKK
Ga0307928_101597492	3300031227	Saline Water	MNEKILKEILQELKEIHSHLNNLETLYKFTNRVEMKKEEVPKDKK
Ga0307928_102810941	3300031227	Saline Water	MEKILKEILQEVKGIHDHLNNLETLYKFVNRVEMKKEEVPKDKKGFEKSK
Ga0307928_103145642	3300031227	Saline Water	MEKILKEILQELKGIHDHLNIIETLYKYVNRVEIKKEEVPKNKK
Ga0307928_103240531	3300031227	Saline Water	MEKLLKEILEELKNVHHHLENIETLYKFTNRVEMKKEEVPKDKK
Ga0307928_103866372	3300031227	Saline Water	MNEKILKEILQELKEIHDHLNTFEALYKFVNRVEMKKEEVPKDKKE
Ga0307427_10742102	3300031351	Salt Marsh	MEKILKEILEELKNIHFHLDNLETLYKFTNRVEMKKEEIIEDKE
Ga0307434_10214193	3300031379	Salt Marsh	MGKILKEILEELKNIHFHLDNLETLYKFTNRVEMKKEEIIEDKE
Ga0307434_10347181	3300031379	Salt Marsh	ELKDIHYHLDNLETFYRFVNRVEMKKEEIIKDKKGN
Ga0307434_10926452	3300031379	Salt Marsh	MNEKILKEILQELKDLHYHLDRLDTLYMFVNRVEIKKEEIIEDKK
Ga0307380_1001353510	3300031539	Soil	MNEKILKEILQELKNIHHHLDRLDAFYMMVNKIEMKKEEITEDKK
Ga0307380_102008293	3300031539	Soil	MNEKILKEILQELKNIHYHLEQQLDFYMFVNRVEMKKEDKEVTKEVKK
Ga0307380_106779431	3300031539	Soil	MEKLLKEILEELKNIHFHLDNLETLYKFTNRVEMKKEITEDKK
Ga0307380_109966851	3300031539	Soil	MNDKLLKEILQELKDIHFHLDNLEVLYKFTNRVEIKKEIPEDKKXRDYLVLI
Ga0307380_110912622	3300031539	Soil	MNEKILREILEELKNIHYHLDNLETFYMFVNRVEMKKGEITEDKK
Ga0307379_110337822	3300031565	Soil	MNEKILREILQEFKDIHSHLNNLETFYMFVNRVEMKKEEITEDKK
Ga0307379_114412762	3300031565	Soil	MNEKILKEILEELKNIHSHLDNFEVFYKFVNRVEMKGEMKKEEIIEDKK
Ga0307378_105498952	3300031566	Soil	MNEKILKEILEELKNIHSHLDNFEVFYKFVNRVEMKKDEIKKENIKDKK
Ga0307378_106002511	3300031566	Soil	MNEKILKEILQELKDIHFHLDNLEVLYKFTNRVEIKKEIPEDKK
Ga0307378_111855652	3300031566	Soil	MNDKLLKEILQELKDIHFHLENLEVLYKFTNRVEIKKEIPED
Ga0307376_100112406	3300031578	Soil	MNDKILKEILQELKDIHSHLDNLETFYKFVNRVEMKKEITEDKK
Ga0307376_103192602	3300031578	Soil	MNDKLLKEILEELKNIHFHLDNLETLYKFTNRVEMKKEITEDKK
Ga0307376_105687311	3300031578	Soil	EILEELKNIHSHLDNFEVFYKFVNRVEMKKDEITEDKK
Ga0307375_106973651	3300031669	Soil	ILKEILEELKNIHFHLDNLETLYKFTNRVEMKKEITEDKK
Ga0307377_103081463	3300031673	Soil	MNDKLLKEILQELKDIHFHLDNLEVLYKFTNRVEIKKEIPEDKK
Ga0307377_105836992	3300031673	Soil	MNEKILKEILQELKNIHFHLDRLDAFYIMVNKIEMRKEKIVEDEKGD
Ga0307377_107825001	3300031673	Soil	MEKILKEILQELKDIHYHLDNFEVFYKFVNRVEMKKEDKEVTKEVKK
Ga0307377_109492182	3300031673	Soil	MNEKILKEILQELKNIHYHLEQQLDFYMFVNRVEMKKEDKEVTKEVKKXRDYL
Ga0315293_1000033069	3300031746	Sediment	MKEEILKEILQELKNMHFHLDNLETFYRFVNRVDIKEKEITEDKK
Ga0315288_100221133	3300031772	Sediment	MNEEVLKEILQELKDMHSHLDNLETFYRFVNRVEMKEKEITEDKK
Ga0315288_100448026	3300031772	Sediment	MNEEILKEILQELKNLHSHLENIEVFYKFVNRVEMKGKEITEDKK
Ga0315288_104173863	3300031772	Sediment	MKEEILKEILQELKNLHFHLDNLEILYKFTNRVEMKGKEITVDKK
Ga0315288_109249472	3300031772	Sediment	MKEEILKNILQELKNMHSHLENIEVFYKFVNRVEMKKEEITVDKK
Ga0315285_102231402	3300031885	Sediment	MKEEILKEILQELKDMHSHLDNLETFYRFVNRVEMKEKEITEDKK
Ga0315285_103225182	3300031885	Sediment	MNEEILKEILQELKNLHFHLENLETFYRFVNRVEMKAREITADKK
Ga0315285_104191102	3300031885	Sediment	MKEEILKEILQELKNIHSHLENIEVFYKFVNRVEMKKEEITIDKK
Ga0315294_104656503	3300031952	Sediment	MKEEILKEILQEIKNMHSHLDNLEIFYRFVNRVEMKGKEITEDKK
Ga0315274_1000979814	3300031999	Sediment	MKEEILKEILQELKNLHFHLDNLETFYRFVNRVEIKEKEITADKK
Ga0315274_104931873	3300031999	Sediment	MKEEILKEILQELKNIHSHLENIEVFYKFVNRVEMKKEEITVDKK
Ga0315274_108334032	3300031999	Sediment	MNEEILKEILQELKNIHFHLENLETFYRFVNRVEMKGKEITEDKK
Ga0315296_100104984	3300032020	Sediment	MKEEILKEILQELKNLHSHLENIEVFYKFINRVEMKKEEVTADKK
Ga0315296_102166712	3300032020	Sediment	MNEEILKEILQEIKNLHFHLENMETFYRFVNRVEMKGKEITKDKK
Ga0315296_102689723	3300032020	Sediment	MKEEILKEILQEIKDMHSHLDNLETFYRFVNRVEMKEKEITEDKK
Ga0315296_105111132	3300032020	Sediment	MNEEILKEILQELKNMHSHLDNLETFYRFVNRVEMKEKEITADKK
Ga0315296_105448991	3300032020	Sediment	MNEEILKEILQELKDMHSHLDNLETFYRFVNRVEMKAREITADKK
Ga0315289_101261364	3300032046	Sediment	MNEEILKEILQELKDMHSHLDNLETFYRFVNRVEMKKKEEDKK
Ga0315289_104125623	3300032046	Sediment	MKEEILKEILQELKNIHFHLENMETLYKFTNRVEMKGEEITADKK
Ga0315295_113473222	3300032156	Sediment	MKEEILKEILQELKNIHFHLENLETFYRFVNRVEMKGKEITEDKK
Ga0315295_117658501	3300032156	Sediment	MNEEILKEILQELKNLHSHLENIEVFYKFVNRVEMKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088254

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences