Sample 3300003141

3300003141: Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf

Overview

Basic Information
IMG/M Taxon OID	3300003141 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111471 \| Gp0097592 \| Ga0052246
Sample Name	Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf
Sequencing Status	Permanent Draft
Sequencing Center	Japan Agency for Marine-Earth Science and Technology
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	34967503
Sequencing Scaffolds	49
Novel Protein Genes	51
Associated Families	38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	47
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Petrotogales → Petrotogaceae → Petrotoga → Petrotoga mobilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Sediment Microbial Communities From Deep Subseafloor
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Shimokita Peninsula, Japan, in Northwestern Pacific
Coordinates	Lat. (^o)	41.1773	Long. (^o)	142.2013	Alt. (m)	N/A	Depth (m)	1180.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008850	Metagenome	327	Y
F015949	Metagenome	251	Y
F022979	Metagenome / Metatranscriptome	212	Y
F023034	Metagenome / Metatranscriptome	211	Y
F024933	Metagenome	204	Y
F024951	Metagenome	203	Y
F029110	Metagenome / Metatranscriptome	189	N
F029940	Metagenome / Metatranscriptome	187	Y
F029984	Metagenome	186	Y
F030981	Metagenome	183	Y
F034976	Metagenome	173	Y
F039194	Metagenome	164	Y
F042912	Metagenome / Metatranscriptome	157	Y
F043408	Metagenome	156	N
F046170	Metagenome / Metatranscriptome	151	Y
F049284	Metagenome	147	Y
F050887	Metagenome	144	Y
F056273	Metagenome	137	Y
F058676	Metagenome	134	Y
F061823	Metagenome	131	Y
F069658	Metagenome	123	Y
F069660	Metagenome / Metatranscriptome	123	Y
F070873	Metagenome	122	Y
F071959	Metagenome / Metatranscriptome	121	Y
F074370	Metagenome / Metatranscriptome	119	Y
F076658	Metagenome	118	Y
F078009	Metagenome	117	Y
F083668	Metagenome / Metatranscriptome	112	Y
F085585	Metagenome / Metatranscriptome	111	Y
F087951	Metagenome	110	Y
F088254	Metagenome	109	Y
F088833	Metagenome	109	N
F089823	Metagenome	108	Y
F091295	Metagenome / Metatranscriptome	107	Y
F094881	Metagenome	105	Y
F098316	Metagenome	104	Y
F102405	Metagenome / Metatranscriptome	101	Y
F104424	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0052246_1000012	Not Available	6686	Open in IMG/M
Ga0052246_1000419	Not Available	2315	Open in IMG/M
Ga0052246_1000610	Not Available	2036	Open in IMG/M
Ga0052246_1000656	Not Available	1989	Open in IMG/M
Ga0052246_1001074	Not Available	1685	Open in IMG/M
Ga0052246_1001089	All Organisms → Viruses → Predicted Viral	1679	Open in IMG/M
Ga0052246_1001221	Not Available	1599	Open in IMG/M
Ga0052246_1001531	Not Available	1495	Open in IMG/M
Ga0052246_1001875	Not Available	1405	Open in IMG/M
Ga0052246_1002503	Not Available	1265	Open in IMG/M
Ga0052246_1002673	Not Available	1225	Open in IMG/M
Ga0052246_1002728	Not Available	1214	Open in IMG/M
Ga0052246_1003025	Not Available	1145	Open in IMG/M
Ga0052246_1003058	Not Available	1140	Open in IMG/M
Ga0052246_1003115	Not Available	1129	Open in IMG/M
Ga0052246_1003587	Not Available	1018	Open in IMG/M
Ga0052246_1004427	Not Available	844	Open in IMG/M
Ga0052246_1004517	Not Available	832	Open in IMG/M
Ga0052246_1004541	Not Available	829	Open in IMG/M
Ga0052246_1004721	Not Available	811	Open in IMG/M
Ga0052246_1005526	Not Available	670	Open in IMG/M
Ga0052246_1005809	Not Available	517	Open in IMG/M
Ga0052246_1006166	Not Available	1507	Open in IMG/M
Ga0052246_1006361	Not Available	1443	Open in IMG/M
Ga0052246_1006959	Not Available	1294	Open in IMG/M
Ga0052246_1007762	Not Available	1155	Open in IMG/M
Ga0052246_1009751	Not Available	900	Open in IMG/M
Ga0052246_1010978	Not Available	777	Open in IMG/M
Ga0052246_1011370	Not Available	739	Open in IMG/M
Ga0052246_1012187	Not Available	637	Open in IMG/M
Ga0052246_1012979	Not Available	522	Open in IMG/M
Ga0052246_1015386	Not Available	870	Open in IMG/M
Ga0052246_1016136	Not Available	857	Open in IMG/M
Ga0052246_1018629	Not Available	831	Open in IMG/M
Ga0052246_1020145	Not Available	819	Open in IMG/M
Ga0052246_1020731	Not Available	815	Open in IMG/M
Ga0052246_1020745	Not Available	815	Open in IMG/M
Ga0052246_1021415	Not Available	810	Open in IMG/M
Ga0052246_1023422	Not Available	797	Open in IMG/M
Ga0052246_1027884	Not Available	767	Open in IMG/M
Ga0052246_1028387	Not Available	763	Open in IMG/M
Ga0052246_1030473	Not Available	746	Open in IMG/M
Ga0052246_1030616	Not Available	745	Open in IMG/M
Ga0052246_1030816	Not Available	743	Open in IMG/M
Ga0052246_1031890	Not Available	732	Open in IMG/M
Ga0052246_1032069	Not Available	730	Open in IMG/M
Ga0052246_1032960	Not Available	719	Open in IMG/M
Ga0052246_1033054	Not Available	718	Open in IMG/M
Ga0052246_1034077	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Petrotogales → Petrotogaceae → Petrotoga → Petrotoga mobilis	702	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052246_1000012	Ga0052246_10000129	F098316	MSILRAEIIAKIRKGIREGIPRTRLYNELRAVGPVTRKTTFLADYRNVAGVERVEGALRFVRKDRYPTEKTMAAVTWETSKEYMYKVKVQSVLRIGEPITERFVNIMSDVPMTPAMIETEVKERWGEWEKYTAEEITGLQVWSAVRKVME*
Ga0052246_1000419	Ga0052246_10004193	F089823	MCLDKLKELGVSTASEWASAMGYETHNALAKVIRRILNDMPDKIRVNSNRKPRYYRAL*
Ga0052246_1000610	Ga0052246_10006101	F030981	MGKVRRCDRRCHNAKKPRCRCWCGGAFHGVDGAGAVNREALAQGMTGLLEQHGFKEGETAYIEQRRLPLEVANVY
Ga0052246_1000656	Ga0052246_10006561	F058676	VKERIIRMDLTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPSE*
Ga0052246_1001074	Ga0052246_10010742	F070873	MAWGGSLNEEGSDHLRNLREADKVIKFLEKFKEDLNDNEKKLISNAIEIIVEHFTKNS*
Ga0052246_1001089	Ga0052246_10010893	F024933	MLRYKRITTPTLTDGKETIIELLSCPTGKKYRIVSISTAPYADMYLRVYRQAEQIVDAASIIMTTAAPLLPMDLPLNVGQVVKAGFYNDGAVSTDPKQITIGYRDD*
Ga0052246_1001221	Ga0052246_10012213	F046170	MIRIQDFGEIGYGGLVTLTEWWDNKRIDEGKIGTGDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYGLTKALGAGGRRGRGSESKAVDQAQKILNERLRAKALTQGSGRTAERSYQREFETVAPHAF*
Ga0052246_1001531	Ga0052246_10015312	F104424	LNEEENQFLEFLHYQINQKNRFENVVRKIPMFKSMIQEGHKTILKMIDKFENIRRREVYGMLVHEFNNMNQKN*
Ga0052246_1001875	Ga0052246_10018754	F058676	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDK
Ga0052246_1002503	Ga0052246_10025031	F071959	MASRSYLINSNDMSLMDKRNYRMTALAAGLQRCGEKGIGNINADIPGLAGIPPAEMDRRVATIKAYIETGKWPTTIDQRELAPLTDFVAGAPAAQDFWVTPALAVVGTVYTCLNALLAYTFPAGRLMVCYGVSVDVAVLPISRLIFRRGSAVGNIQAQFDMQPMGTRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDNFLFEIAGTTTA*
Ga0052246_1002503	Ga0052246_10025032	F046170	MIRIEDFGEIGYGGLVTLTEWWDNKRIDEGKIGTGDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYGLTKALGAGGRRGRGSESKAVDQAQKILNERLRAKALTQGSGRTAERSYQREFETVAPHAF*
Ga0052246_1002673	Ga0052246_10026732	F056273	MVKWKDRMKEWGGGDLTFLSSDGEVIIFVVVDEPQLLKGKFKGNPQERIGCPVVTDEGFVLFITGKRVARKLSKFEDRFKDAAFMVVRHGESGDINASYEVSLFDNEAKTAQLFAIAKKEYKPPMLKQAIKDAKEVMAG*
Ga0052246_1002728	Ga0052246_10027281	F024951	MRKVTVKLEMRIVMLVDEGVEISEVVNELDYQVNDTTTAADILDTEITDYEVVDSK*
Ga0052246_1003025	Ga0052246_10030252	F030981	MGKIRRCSSRCHSAKGTRCRCWCGGFFHGKDGAGAANREALAQAVSEELLKQHGFKEGETAYIEQKKLPLEVA*
Ga0052246_1003058	Ga0052246_10030582	F024951	MRKVTVKLEMRIVMLVDEGVEISGVVNELDYQVNDTTTAADILDTEITDYEVVDSK*
Ga0052246_1003115	Ga0052246_10031153	F029984	TYMRTNIVIDDELKEKWWEIKREADRLKMKIGDYIIFCHDLRKKMVNKEKILEILENPLSDGVKNVDAIQASKSMWKS*
Ga0052246_1003587	Ga0052246_10035871	F008850	MAISKRAKGRFSIMSASEKASVKKAAKLLFDCELMGVKRMRDIVRWAEKR*
Ga0052246_1004427	Ga0052246_10044271	F056273	GEVLIFVVVDEPILLVGKFKGKEQERIGCPVVTDEGFALFITGKRVGRKLSKFEDRFKDTAFMVTRHGEAGDINASYDVGVFDNAEKTEQLFAIAKREYKPALLKEAIKDANEVMAT*
Ga0052246_1004517	Ga0052246_10045172	F098316	LLLRLSPLQNSYRLRPVLADYRNVAGVERVEGALRFVRKDRYPTEKTMAAVTWETSKEYMYKVKVQSVLRIGESITERFVNIMSDVPMTPAMIETEVKERWGEWEKYTAEEITGLQVWSAVRKVME*
Ga0052246_1004541	Ga0052246_10045411	F098316	MAIERAIVIAKMRGAFREGLAASRFIKDMRDIGLSYRRTDMLADWRSVNELERKEGVLRYVRKDRYPTEKTIAAVTWETSKEFMYKVKVQSVIRIGEPITERFVNIMSDVPMTPAMVEAEVEERWGEWEKYEAEIITGLQTWSAVRKVME*
Ga0052246_1004721	Ga0052246_10047211	F061823	MVMKQENIRLINQIEVNYFLHRIKKNFPNFVAGVITDNNGFAIGSDISKRLWIQENKLALWAISKNKENKDILNDPNLVQLKFDIDKGKQFKLFILLEKSKNNRNRVKPLKTLIKSQELF
Ga0052246_1005526	Ga0052246_10055261	F069658	MTEDVSEEVKKEIFRLICVPGIEVEDISDIVNKDYNTQLNYEKVMKILSNEYMKHNLDFGRRLCCRF*
Ga0052246_1005809	Ga0052246_10058091	F050887	SDSTPEYLKFFGEIKFAEERSLSASDFESSLKSYFSKEKKLPQGRYKFAELNNSSTKDFEDSFYSYFE*
Ga0052246_1006166	Ga0052246_10061662	F088254	MNEKILKEILQELKDIHFHLDELSIFYKFVNRVEMKKEEVKKEIVEDKK*
Ga0052246_1006361	Ga0052246_10063613	F083668	MKWTPDKVTTLILIVGCLVLLFTGRDGEVKSILTVAAGWLFGTGYMDIKRGGK*
Ga0052246_1006959	Ga0052246_10069593	F022979	SSGTTYVSNDIDISAYTDPSNGRVLVVDKAMISFSRATGGPIRATDIDAVIGERSMGAQALSETQTALVDLNNNAMFLKSNLYASNTVNDAGGAGVYGVMEQTDALNPAEFVSGFIIPTDKIHCGIDAGVAWTTELDVGFLFEVHTEKLSLRRIQELLVSLTAN*
Ga0052246_1007762	Ga0052246_10077623	F034976	MSEAKPVRCQKCGKPLGYVTVLAKGLLGLQQPLQKVKLVAICMECSQKR*
Ga0052246_1009751	Ga0052246_10097511	F015949	MSDKKYTFGQPSLMKAIEPGQKASIKFLDQPKVVDTEWGEKYSVTILLLSHPLYSITSPKGIKMSWQTNAKVIKDLVACLEENNKEFLKDYLDMTWELSVAEDGSYWLNA*
Ga0052246_1010978	Ga0052246_10109781	F023034	MNVNLYNTTDYERKRDWTLGENKPNSNPNKPNLRKAKMNVNSLITKGYRKKDDFAVRINKPNFRKGQK*
Ga0052246_1011370	Ga0052246_10113701	F078009	MAREKIYLTPDQLNRLKGLDADIVWLREEIRRAEYVGIDIADLKTRFEKTTSIRERMIEEYSK*
Ga0052246_1012187	Ga0052246_10121872	F069660	PIILTLVKEFETPGFGAEKKKVILDSIGLFYDKLAESNALPITKEKLLGVAGSFIDIAVAFFNVVGWFKHKGPTDST*
Ga0052246_1012979	Ga0052246_10129792	F091295	KLDKATRVCTKYLERLIDKKFQLALKVKQPSTPRVDLSKIEVKLDSLQKQIDGLKPKIDASYSFVQERDEREIYLNALTEKAEKIIDDMKEHFEELYKSGYYKEGQKRKIREEGLFKKGGKVMGVEK*
Ga0052246_1015386	Ga0052246_10153862	F042912	MKWTPDLIIALVLIVGCFVLLGLGIDSEVKSILTVAAGWCFGSQYQVRRQKVLSPGTKE*
Ga0052246_1016136	Ga0052246_10161362	F085585	LTLKGLNGTDISEKIRLFEKEMSKCLSKALDTEVPMQYNEQFFATTIFCPTLTSDMRGSNNVEICAVESFDIPDYSDNDAALTSLGSLSIPDEDRESTWKFQEMYNDYINQHSKQDASRLGGSYGIQEGVSILPQSRTIEAEVVTSLPAASKDSYGADSRL*
Ga0052246_1018629	Ga0052246_10186292	F056273	MAKWKEKMKEWGGGDLTFLSSDGEVILFVVVDEPQLLKGKFKGNPQERIGCPVVTDEGFVLFITGKRVARKLSKFEDRFKDAAFMVVRHGEAGDINASYEVTLLDNEAKTEQLFTIAKKEYKPALLKQAIKDAKEVMTN*
Ga0052246_1020145	Ga0052246_10201451	F076658	ARKEIELPEGVVTKVRVRFPPGPRGQVFTAVFQGTHKMWPRGEGNYAWGDDEPIVMDEHMRNITGWHYFLEGYAPLTSYDHTIWWDFNVIEMEHAESMERLTTKLDKFFKDMGLW*
Ga0052246_1020731	Ga0052246_10207311	F049284	MSYRTKTQKKNAMKAINSKAMKLFASGSISMKDADSIARIMKTRMKQL*
Ga0052246_1020745	Ga0052246_10207451	F088833	FAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGAAVADYVLMAWLWI*
Ga0052246_1020745	Ga0052246_10207453	F043408	WLMKVRKEVSLMVETAHIANGMENFSQWVRIGLRSYGLKEDIATQSMRVVRYRKACLHLASTLIDYATQVDPNYRGNVEELIAKALNQTTLEEFE*
Ga0052246_1021415	Ga0052246_10214152	F029110	MNQKISELLKENASNVANSETGSKKDIGGKKEVSKAWKEIQKKIKQIDAKFYEIIKDR*
Ga0052246_1023422	Ga0052246_10234222	F074370	MADEMAEKLAEAKKKMFGAQQPAGKVIILVKGDSLIQSKDPKVEVRQLE*
Ga0052246_1027884	Ga0052246_10278841	F094881	MLKWKRVLSETLDLNQERLTPILAGMSGKNRVIKKISTTPTADKYLRVYRDAEQIVDFDSFTLDGVVPIIDMDLPLAEGQQCSVGFYNSAGVTTKIEIMIAYEETG*
Ga0052246_1028387	Ga0052246_10283871	F087951	MSDSENPIDRELFLEKFEKLSLKIEQLTSEISKMKEKLDKTNKFNRSFGLEALRNSKPLGFAREIHGIKSPTKRYILSIRTVSELWKGRKNDFLIAIRQQEKQTQKDLKALGIRIPIDDMKNLTTLAREVLSMLYISSELKGIEITEILREMISQINKEGQSMVREVKQNMVL*
Ga0052246_1030473	Ga0052246_10304732	F039194	MPDLYIFKTQVGMFDPVALQNHNVCIHYVHKAYYRKVDFLEGIPPFQCIDITAGLGLPAVTPSGRVNIANLEMADNEFGLWRWYPIDDAQIRLYHPAGISKYQLRNLQVPVDMNILFRDPNLVSTEIAVWQNNRPAVEAINGHAFALGAVRLIAIGYRFHTVDLESGKE
Ga0052246_1030616	Ga0052246_10306161	F056273	KDWGGGDLTFLSSDGECLLFVVVDEPVLLEGKYKGNPQERIGCPVVTDEGFVLFVTGKRTARKLSKFEDRFKDAAFIVTRHGESGDINSKYDVSLLDDKVKVEQLFLLAKKEYKPAMLKQAIEDAKEVMKG*
Ga0052246_1030816	Ga0052246_10308161	F071959	MASRNYLINSNDMSLMDKRNYRQTALAAGLQRCGEKGIGNINADIPGLAGILPAEMERRVAMIKAYIDTGKWPTTIDQRELAPLTDFVIAAAQDFWVTPALAAVGTVYTCLDAQLQYTFPAGRLMVCYGVSVDVAVLPISRLIFRRGSAVGNIQAQFDMQPMGTRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDK
Ga0052246_1031890	Ga0052246_10318901	F102405	EGESMAQEVNLLDPLGIAKAVRGQVNQMATQAKLPQLPELPTIKVSMAGLPLLNQFNQIPDRPGISRGDRAG*
Ga0052246_1032069	Ga0052246_10320691	F029940	MSSYESNVEELFLEKFEKLALKVEQLTDEISKMKNKLDKNYKLNRTFGLKTIRNSEPLEFAKDIMGIGSPTKRYLLSLRAITEEWKGRKNDILLTIRQQEQETHLDLKALGIRIPINDIKNISLLAKEILSLLYISCDLHGTSINEILRDIITEINENGYKMVQEIKQKMVF*
Ga0052246_1032960	Ga0052246_10329603	F074370	MADEMAEKLAEAKKKMFGAQQPAGKVIILVKGDSLIQSKDPKVEV*
Ga0052246_1033054	Ga0052246_10330542	F102405	MAQEVNLLDPLGIAKAVRGQVNQMATQAKLPQLPELPTIKVSMAGLPLLNQFNQIPDRPGISRGDRAG*
Ga0052246_1034077	Ga0052246_10340771	F069660	MGLTNILKLLGIVGGIIPIILTLIKEIEIPGWGKEKKQAILDAISLFYDKISEGNTLPITKEKLLGIAGGFVDIVVGFFNLVGWFKHGSPTVSS*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003141: Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences