Metagenome Family F091086

Basic Information
Family ID	F091086
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	60 residues
Representative Sequence	MQDIINTIKISNNPNEVKQILKPLKIKEVIKIAKGLGVCIRGNENKTEIINNIILGIMK
Number of Associated Samples	10
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.46 %
% of genes near scaffold ends (potentially truncated)	5.61 %
% of genes from short scaffolds (< 2000 bps)	27.10 %
Associated GOLD sequencing projects	8
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Most Common Taxonomy
Group	Bacteria (43.925 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil (64.486 % of family members)
Environment Ontology (ENVO)	Unclassified (65.421 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (100.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.13% β-sheet: 0.00% Coil/Unstructured: 52.87%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
a.140.4.1: Recombination endonuclease VII, C-terminal and dimerization domains	d1e7la1	1e7l	0.68512
a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain	d1jr3a1	1jr3	0.67979
a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain	d1sxjb1	1sxj	0.67336
a.80.1.2: MgsA/YrvN C-terminal domain-like	d3bgea1	3bge	0.67314
a.262.1.1: PriB N-terminal domain-like	d1zt2b1	1zt2	0.66785

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03851	UvdE	7.48
PF04545	Sigma70_r4	7.48
PF00929	RNase_T	4.67
PF12844	HTH_19	4.67
PF00149	Metallophos	2.80
PF00145	DNA_methylase	2.80
PF01844	HNH	2.80
PF01555	N6_N4_Mtase	1.87
PF00847	AP2	1.87
PF14072	DndB	1.87
PF00589	Phage_integrase	1.87
PF14354	Lar_restr_allev	1.87
PF02452	PemK_toxin	1.87
PF14359	DUF4406	1.87
PF13328	HD_4	1.87
PF10543	ORF6N	0.93
PF06908	YpsA	0.93
PF04851	ResIII	0.93
PF01943	Polysacc_synt	0.93
PF04055	Radical_SAM	0.93
PF09643	YopX	0.93
PF04542	Sigma70_r2	0.93
PF09397	FtsK_gamma	0.93
PF04480	DUF559	0.93
PF06866	DUF1256	0.93
PF01467	CTP_transf_like	0.93
PF02498	Bro-N	0.93
PF13671	AAA_33	0.93
PF01885	PTS_2-RNA	0.93
PF15714	SpoVT_C	0.93
PF00753	Lactamase_B	0.93
PF12850	Metallophos_2	0.93
PF13708	DUF4942	0.93
PF07927	HicA_toxin	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG4294	UV DNA damage repair endonuclease	Replication, recombination and repair [L]	7.48
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	2.80
COG0863	DNA modification methylase	Replication, recombination and repair [L]	1.87
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	1.87
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	1.87
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	1.87
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.93
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.93
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.93
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.93
COG1859	RNA:NAD 2'-phosphotransferase, TPT1/KptA family	Translation, ribosomal structure and biogenesis [J]	0.93
COG3617	Prophage antirepressor	Mobilome: prophages, transposons [X]	0.93
COG4474	Uncharacterized SPBc2 prophage-derived protein YoqJ	Mobilome: prophages, transposons [X]	0.93
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.49 %
Unclassified	root	N/A	34.58 %
Niallia	genus	Niallia	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	44.86 %
Unclassified	root	N/A	34.58 %
Viruses	superkingdom	All Organisms → Viruses	19.63 %
unclassified Niallia	no rank	Niallia → unclassified Niallia	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.93 %
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.82 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.80 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Niallia sp. MER 6	species	Niallia → unclassified Niallia → Niallia sp. MER 6	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	31.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.82 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.80 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Niallia sp. MER 6	species	Niallia → unclassified Niallia → Niallia sp. MER 6	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	31.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.82 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.80 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Niallia sp. MER 6	species	Niallia → unclassified Niallia → Niallia sp. MER 6	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.82 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	5.61 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	3.74 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.80 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Niallia sp. MER 6	species	Niallia → unclassified Niallia → Niallia sp. MER 6	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.82 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	5.61 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2.80 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2.80 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Niallia sp. MER 6	species	Niallia → unclassified Niallia → Niallia sp. MER 6	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.82 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2.80 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.93 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.93 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Niallia sp. MER 6	species	Niallia → unclassified Niallia → Niallia sp. MER 6	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.82 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2.80 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.93 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.93 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Niallia sp. MER 6	species	Niallia → unclassified Niallia → Niallia sp. MER 6	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.82 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2.80 %
Paenibacillus cremeus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus cremeus	0.93 %
Clostridium botulinum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	0.93 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Niallia sp. MER 6	species	Niallia → unclassified Niallia → Niallia sp. MER 6	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001041\|C687J13239_1000686	Not Available	16525	Open in IMG/M
3300001041\|C687J13239_1000959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13073	Open in IMG/M
3300001041\|C687J13239_1001269	All Organisms → cellular organisms → Bacteria	10633	Open in IMG/M
3300001041\|C687J13239_1001346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	10225	Open in IMG/M
3300001041\|C687J13239_1003191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	5451	Open in IMG/M
3300001041\|C687J13239_1003242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5383	Open in IMG/M
3300001041\|C687J13239_1003795	All Organisms → Viruses → Predicted Viral	4774	Open in IMG/M
3300001041\|C687J13239_1004184	All Organisms → Viruses → Predicted Viral	4466	Open in IMG/M
3300001041\|C687J13239_1004242	All Organisms → Viruses → Predicted Viral	4429	Open in IMG/M
3300001041\|C687J13239_1004693	All Organisms → Viruses → Predicted Viral	4113	Open in IMG/M
3300001041\|C687J13239_1004792	All Organisms → Viruses → Predicted Viral	4054	Open in IMG/M
3300001041\|C687J13239_1005403	All Organisms → Viruses → Predicted Viral	3734	Open in IMG/M
3300001041\|C687J13239_1005550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3667	Open in IMG/M
3300001041\|C687J13239_1005780	All Organisms → Viruses → Predicted Viral	3551	Open in IMG/M
3300001041\|C687J13239_1005816	Not Available	3534	Open in IMG/M
3300001041\|C687J13239_1007884	All Organisms → Viruses → Predicted Viral	2797	Open in IMG/M
3300001041\|C687J13239_1009261	All Organisms → Viruses → Predicted Viral	2475	Open in IMG/M
3300001041\|C687J13239_1010391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2262	Open in IMG/M
3300001041\|C687J13239_1010981	Not Available	2166	Open in IMG/M
3300001041\|C687J13239_1012762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1924	Open in IMG/M
3300001041\|C687J13239_1015099	Not Available	1651	Open in IMG/M
3300001041\|C687J13239_1015353	All Organisms → Viruses → Predicted Viral	1625	Open in IMG/M
3300001041\|C687J13239_1016678	All Organisms → Viruses → Predicted Viral	1503	Open in IMG/M
3300001041\|C687J13239_1019792	Not Available	1270	Open in IMG/M
3300001041\|C687J13239_1022290	Not Available	1129	Open in IMG/M
3300001041\|C687J13239_1024860	Not Available	1015	Open in IMG/M
3300001041\|C687J13239_1026961	Not Available	934	Open in IMG/M
3300001041\|C687J13239_1034207	Not Available	739	Open in IMG/M
3300001041\|C687J13239_1045157	Not Available	562	Open in IMG/M
3300001242\|C687J13896_1007070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	3308	Open in IMG/M
3300001242\|C687J13896_1012210	All Organisms → Viruses → Predicted Viral	2037	Open in IMG/M
3300001242\|C687J13896_1014123	Niallia → unclassified Niallia → Niallia sp. MER 6	1784	Open in IMG/M
3300024999\|Ga0209728_1000024	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	158071	Open in IMG/M
3300024999\|Ga0209728_1000028	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	150268	Open in IMG/M
3300024999\|Ga0209728_1000044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	121089	Open in IMG/M
3300024999\|Ga0209728_1000047	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	119639	Open in IMG/M
3300024999\|Ga0209728_1000048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	118022	Open in IMG/M
3300024999\|Ga0209728_1000064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	99399	Open in IMG/M
3300024999\|Ga0209728_1000161	All Organisms → cellular organisms → Bacteria	61805	Open in IMG/M
3300024999\|Ga0209728_1000221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	53943	Open in IMG/M
3300024999\|Ga0209728_1000254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	49018	Open in IMG/M
3300024999\|Ga0209728_1000266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	47881	Open in IMG/M
3300024999\|Ga0209728_1000289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	45696	Open in IMG/M
3300024999\|Ga0209728_1000300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	44903	Open in IMG/M
3300024999\|Ga0209728_1000320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	43162	Open in IMG/M
3300024999\|Ga0209728_1000424	All Organisms → cellular organisms → Bacteria	35914	Open in IMG/M
3300024999\|Ga0209728_1000433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	35512	Open in IMG/M
3300024999\|Ga0209728_1000583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	27752	Open in IMG/M
3300024999\|Ga0209728_1000601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	27154	Open in IMG/M
3300024999\|Ga0209728_1000729	All Organisms → cellular organisms → Bacteria	23844	Open in IMG/M
3300024999\|Ga0209728_1000895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	20650	Open in IMG/M
3300024999\|Ga0209728_1000975	All Organisms → cellular organisms → Bacteria	19378	Open in IMG/M
3300024999\|Ga0209728_1001174	All Organisms → cellular organisms → Bacteria	16988	Open in IMG/M
3300024999\|Ga0209728_1001215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	16548	Open in IMG/M
3300024999\|Ga0209728_1001342	Not Available	15427	Open in IMG/M
3300024999\|Ga0209728_1001343	All Organisms → cellular organisms → Bacteria	15402	Open in IMG/M
3300024999\|Ga0209728_1001454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	14484	Open in IMG/M
3300024999\|Ga0209728_1001625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13227	Open in IMG/M
3300024999\|Ga0209728_1001886	All Organisms → cellular organisms → Bacteria	11619	Open in IMG/M
3300024999\|Ga0209728_1001905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	11516	Open in IMG/M
3300024999\|Ga0209728_1001926	Not Available	11366	Open in IMG/M
3300024999\|Ga0209728_1001980	All Organisms → cellular organisms → Bacteria	11142	Open in IMG/M
3300024999\|Ga0209728_1002214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10152	Open in IMG/M
3300024999\|Ga0209728_1002225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10116	Open in IMG/M
3300024999\|Ga0209728_1002246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	10042	Open in IMG/M
3300024999\|Ga0209728_1002466	Not Available	9276	Open in IMG/M
3300024999\|Ga0209728_1002585	All Organisms → cellular organisms → Bacteria	8933	Open in IMG/M
3300024999\|Ga0209728_1002643	All Organisms → cellular organisms → Bacteria	8788	Open in IMG/M
3300024999\|Ga0209728_1003053	Not Available	7858	Open in IMG/M
3300024999\|Ga0209728_1003067	All Organisms → cellular organisms → Bacteria	7819	Open in IMG/M
3300024999\|Ga0209728_1003400	Not Available	7183	Open in IMG/M
3300024999\|Ga0209728_1003894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6410	Open in IMG/M
3300024999\|Ga0209728_1004055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus cremeus	6127	Open in IMG/M
3300024999\|Ga0209728_1004732	Not Available	5373	Open in IMG/M
3300024999\|Ga0209728_1005888	All Organisms → Viruses → Predicted Viral	4481	Open in IMG/M
3300024999\|Ga0209728_1007369	All Organisms → Viruses → Predicted Viral	3682	Open in IMG/M
3300024999\|Ga0209728_1007376	All Organisms → Viruses → Predicted Viral	3679	Open in IMG/M
3300024999\|Ga0209728_1007403	Not Available	3669	Open in IMG/M
3300024999\|Ga0209728_1008043	All Organisms → Viruses → Predicted Viral	3420	Open in IMG/M
3300024999\|Ga0209728_1008266	Not Available	3340	Open in IMG/M
3300024999\|Ga0209728_1008500	Not Available	3253	Open in IMG/M
3300024999\|Ga0209728_1010137	All Organisms → Viruses → Predicted Viral	2805	Open in IMG/M
3300024999\|Ga0209728_1013908	Not Available	2125	Open in IMG/M
3300024999\|Ga0209728_1015938	Not Available	1882	Open in IMG/M
3300024999\|Ga0209728_1016443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	1829	Open in IMG/M
3300024999\|Ga0209728_1018446	Not Available	1652	Open in IMG/M
3300024999\|Ga0209728_1022001	Not Available	1397	Open in IMG/M
3300024999\|Ga0209728_1022093	Not Available	1392	Open in IMG/M
3300024999\|Ga0209728_1023182	Not Available	1331	Open in IMG/M
3300024999\|Ga0209728_1028342	Not Available	1111	Open in IMG/M
3300024999\|Ga0209728_1041596	Not Available	791	Open in IMG/M
3300024999\|Ga0209728_1042873	Not Available	769	Open in IMG/M
3300024999\|Ga0209728_1044211	Not Available	746	Open in IMG/M
3300025000\|Ga0209318_1000995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	21148	Open in IMG/M
3300025000\|Ga0209318_1001153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	18290	Open in IMG/M
3300025000\|Ga0209318_1002427	All Organisms → cellular organisms → Bacteria	9220	Open in IMG/M
3300025000\|Ga0209318_1002531	Not Available	8892	Open in IMG/M
3300025000\|Ga0209318_1008769	Not Available	3040	Open in IMG/M
3300025000\|Ga0209318_1017584	Not Available	1641	Open in IMG/M
3300025000\|Ga0209318_1031412	Not Available	940	Open in IMG/M
3300025010\|Ga0209319_1030676	Not Available	1325	Open in IMG/M
3300025010\|Ga0209319_1038625	Not Available	1120	Open in IMG/M
3300025011\|Ga0209000_1000671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	28747	Open in IMG/M
3300025012\|Ga0209727_1037042	All Organisms → Viruses → Predicted Viral	1618	Open in IMG/M
3300025073\|Ga0208245_1043443	All Organisms → cellular organisms → Archaea	994	Open in IMG/M
3300025117\|Ga0208958_1158948	Not Available	590	Open in IMG/M
3300028602\|Ga0265294_10473928	Not Available	769	Open in IMG/M

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.13%
Terrestrial	Environmental → Terrestrial	1.87%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	98.13%
Soil	Environmental → Terrestrial → Soil	1.87%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	98.13%
Loam	Environmental → Terrestrial → Soil → Loam	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	98.13%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	64.49%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	32.71%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.93%

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001041	Groundwater microbial communities from Rifle, Colorado, USA - Groundwater D2	Environmental	Open in IMG/M
3300001242	Groundwater microbial communities from Rifle, Colorado - Groundwater E2	Environmental	Open in IMG/M
3300024999	Soil microbial communities from Rifle, Colorado, USA - Groundwater D1	Environmental	Open in IMG/M
3300025000	Soil microbial communities from Rifle, Colorado, USA - Groundwater E1	Environmental	Open in IMG/M
3300025010	Groundwater microbial communities from Rifle, Colorado - Groundwater E2 (SPAdes)	Environmental	Open in IMG/M
3300025011	Groundwater microbial communities from Rifle, Colorado, USA - Groundwater D2 (SPAdes)	Environmental	Open in IMG/M
3300025012	Soil microbial communities from Rifle, Colorado, USA - Groundwater C1	Environmental	Open in IMG/M
3300025073	Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C1 (SPAdes)	Environmental	Open in IMG/M
3300025117	Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection B1 (SPAdes)	Environmental	Open in IMG/M
3300028602	Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3	Environmental	Open in IMG/M

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C687J13239_100068639	3300001041	Groundwater	MQDIINSIKISNNPNEVKQILKPLKIKEIIKIAKGLDVCIRGNENKTEIISNIILGIMK*
C687J13239_10009593	3300001041	Groundwater	MQDIINAIKISNNPNEVKQMLKALKIKEVIKIANGLNVYIRGNENKTEVISNIILGIIKET*
C687J13239_100126923	3300001041	Groundwater	MQDIINTIKISTNPNEVKQILKPLKIKDVINVAKALDVYIRGNENKTEIIGNIILGIIKYKRSD*
C687J13239_100134616	3300001041	Groundwater	MQDIINSIKLSNNPNEVKQILKPLKIKEVIKIAKCLDVCIRGNENKTEIISNIILEIMK*
C687J13239_10031911	3300001041	Groundwater	MQDIINTIKLSNNPNEVKQILKPLKIKEVIKVAKCLDICIRGNENKTEIINNIILGIMK*
C687J13239_100324211	3300001041	Groundwater	MQDIINTIKISTNSNEVKQILKPLKIKEVIKIAKGLDICIRGNENKTEVINNIILGIMK*
C687J13239_100379511	3300001041	Groundwater	MQNIVNMIKITNDPNKVKQLLKPLKIKDVIKIAKDLDICIRGNENKTEIINNIILEIMK*
C687J13239_10041847	3300001041	Groundwater	MRGVREVKIMQDIINTIKTSTNPNEVKQILKPLKIKEVIKIAKGLDVCIRGNENKTEIINNIILGIMK*
C687J13239_10042421	3300001041	Groundwater	LQDIINTIKISTNPNEVKQILKPLKIKDVIKIAKCLNICIRGNENKTEVIGNIILEIMK*
C687J13239_10046933	3300001041	Groundwater	MQDIINTIKISNNPNEVKQILKPLKIKEVIKIAKCLDVYIRGNENKTEIICNIILGIIK*
C687J13239_10047925	3300001041	Groundwater	MQDIINTIKISTNHNEVKQILKPLKIKEVIKIAKGLGICIRGNENKTEVINNIILGIMKGESI*
C687J13239_10054036	3300001041	Groundwater	MQDIINAIKLSTNHNEVKQILKPLKIKEVIKIAKCLGICIRENENKTEIINNIILGIIK*
C687J13239_10055501	3300001041	Groundwater	MQNIINYIKISNNPNEIKQILKPLKIKEVIKVAKCLNLPVRGNENKTEIIGNIIL
C687J13239_10057809	3300001041	Groundwater	MQDIINTIKLSTNPNEVKQVLKPLKIKEVIKIAKGLDVQIRGNENKIEIISNIILGIMK*
C687J13239_100581610	3300001041	Groundwater	MQDIINTIKLSTNPNEVKQILKPLKIKEVIKIAKGLGISIRGNENKTEIISNIILTIIK*
C687J13239_10078847	3300001041	Groundwater	MQDIINTIKISNNPNEVKKILKPLKIKEVVKIAKGLDICIRGNENKTEIICNIVLEVIKGD*
C687J13239_10092615	3300001041	Groundwater	MQDIINTIKTSNNPNEVKQILKPLKTKEVIKIAKCLGICIRGNENKTEIINNIILEIMK*
C687J13239_10103914	3300001041	Groundwater	MQDIINTIKLSTNPNEIKQILKPLKIKEVIKIAKGLNVCIRGNENKTEVINNIILGIIK*
C687J13239_10109811	3300001041	Groundwater	MQDIINTIKILNNPNEVKKILKPLKIKEVIKIAKGLGVCIRGNENKTEVISNIILAIMK*
C687J13239_10127625	3300001041	Groundwater	MQDIINTIKISTNHNEVKQILKPLKIKEVIKIAKGLGICIRGNENKTEIICNIILGIMK*
C687J13239_10150993	3300001041	Groundwater	MQDIINAIKISTNPNEVKQILKSLKIKDVIKVAKCLGIFIRGNENKTEIINNIILGIMK*
C687J13239_10153533	3300001041	Groundwater	MQNIINYIKISNNPNEIKQILKPLKIKEVVKIAKGLNLPVRGNENKTEIIGNIILGIIK*
C687J13239_10166784	3300001041	Groundwater	MQDIINTIKISNNPNEVKQILKPLKIKEVIKIAKGLGVCIRGNENKTEIINNIILGIMK*
C687J13239_10197921	3300001041	Groundwater	MQDIINTIRISNSPNEIKQILKPLKIKEVVKIAKCLDVCIRGNENKTEIISNIILEIMK*
C687J13239_10222904	3300001041	Groundwater	MQNIINYIKISNNPNEIKQILKPLKIKEVIKVAKCLNLPVRGNENKTEIIGNIILGIVK*
C687J13239_10248603	3300001041	Groundwater	MQDIINIIKIFTNPNEVKQILKPLKIKEVIKIAKCLGICIRGNENKTEIINNIILGTIK*
C687J13239_10269611	3300001041	Groundwater	MQDIINTIKISNNPKEVKQILKPLKIKEVIKIARGLGIFIRGNENKTEIISNIILEIMK*
C687J13239_10342071	3300001041	Groundwater	MQDIINTIRISNSPNEIKQILKPLKIKEVIKVAKCLDVYIRGNENKNEVIGNIILEIMK*
C687J13239_10451572	3300001041	Groundwater	MQDIINTIKISTNPNEVKKILKPLKIKEVINVAKGLNVYIRGNENKTEIISNIILTIVK*
C687J13896_10070709	3300001242	Groundwater	MQDIINTIKISNNPKEVKQILKPLKIKEVIKIARGLGICFRGNENKTEIISNIILEIMK*
C687J13896_10122104	3300001242	Groundwater	MQDIINIIKISNNPNEVKQILKPLKIKEVIKIAKGLDIFIRGNENKTEIISNIILEIMKG
C687J13896_10141234	3300001242	Groundwater	MQDIINTIKISNNPNEVKKILKPLKIKEVIKVAKCLNVYIRGNENKTEVIGNIILEIMK*
Ga0209728_100002476	3300024999	Soil	MQDIINTIKISTNSNEVKQILKPLKIKEVIKIAKGLDICIRGNENKTEVINNIILGIMK
Ga0209728_1000028205	3300024999	Soil	MQDIINAIKISNNPNEVKQMLKALKIKEVIKIANGLNVYIRGNENKTEVISNIILGIIKE
Ga0209728_1000044113	3300024999	Soil	MQDIINTIKISNNPKEVKQILKSLKIKEVIKVANGLNVKIRGNENKTEIISNIILEIMK
Ga0209728_100004719	3300024999	Soil	MQNIINTIKISNNPNEVKQILKPLKIKEVIKVAKCLDVCIRGNENKTEVIGNIILAIVKE
Ga0209728_1000048143	3300024999	Soil	MRDVNEVKIMQDIINTIKISTNPNEVKQILKPLKIKDVINVAKALDVYIRGNENKTEIIGNIILGIIKYKRSD
Ga0209728_1000064176	3300024999	Soil	MQDIINTIRISNSPNEIKQILKPLKIKEVVKIAKCLDVCIRGNENKTEIISNIILEIMK
Ga0209728_100016150	3300024999	Soil	MQNIINTIKISNNSNEVKQILKPLKIKEVVKIAKGLDVCIRGNENKTEVIGNIILAIVKG
Ga0209728_100022164	3300024999	Soil	MQDIINTIKLSTNPNEVKQILKPLKIKEVIKIAKGLGISIRGNENKTEIISNIILTIIK
Ga0209728_100025488	3300024999	Soil	MQNIINYIKISNNPNEIKQILKPLKIKEVIKVAKCLNLPVRGNENKTEIIGNIILGIVK
Ga0209728_1000266117	3300024999	Soil	MQDIINTIKISNNPNEVKKILKPLKIKEVVKIAKGLDICIRGNENKTEIICNIVLEVIKG
Ga0209728_1000289121	3300024999	Soil	MQDIINTIKISNNPSEVKQILKPLKIKDVIKVAKGLDVCIRGSENKTEVIGNIILAIVKG
Ga0209728_100030052	3300024999	Soil	MQDIINTIKLSNNPNEVKQILKPLKIKEVIKVAKCLDICIRGNENKTEIINNIILGIMK
Ga0209728_100032041	3300024999	Soil	MQDIINAIKISTNPNEVKQILKSLKIKDVIKVAKCLGIFIRGNENKTEIINNIILGIMK
Ga0209728_100042459	3300024999	Soil	MQDIINSIKLSNNPNEVKQILKPLKIKEVIKIAKCLDVCIRGNENKTEIISNIILEIMK
Ga0209728_100043310	3300024999	Soil	MQDIINSIKISNNPNEVKQILKPLKIKEIIKIAKGLDVCIRGNENKTEIISNIILGIMK
Ga0209728_100058353	3300024999	Soil	MQDIINTIKISTNHNEVKQILKPLKIKEVIKIAKGLGICIRGNENKTEIICNIILGIMK
Ga0209728_100060150	3300024999	Soil	MQNIINYIKISNNPNEIKQILKPLKIKEVVKIAKGLNLPVRGNENKTEIIGNIILGIIK
Ga0209728_100072931	3300024999	Soil	MQDIINTIKISNNPKEVKQILKPLKIKEVIKIAEGLDVYIRGNENKTEIISNIILGIAKE
Ga0209728_100089544	3300024999	Soil	NTIKLSNNPNEVKQILKPLKIKEVIKVAKCLDICIRGNENKTEIINNIILGIMK
Ga0209728_100097552	3300024999	Soil	MQDIINTIKISNNPKEVKQILKPLKIKEVIKIARGLGIFIRGNENKTEIISNIILEIMK
Ga0209728_10011746	3300024999	Soil	MQDIINTIRISNSPNEIKQILKPLKIKEVIKVAKCLDVYIRGNENKNEVIGNIILEIMK
Ga0209728_100121515	3300024999	Soil	MQDIINTIKTSNNPNEVKQILKPLKTKEVIKIAKCLDICIRGNENKTEVIGNIILGIIK
Ga0209728_100134215	3300024999	Soil	MQDIINAIKLSTNHNEVKQILKPLKIKEVIKIAKCLGICIRENENKTEIINNIILGIIK
Ga0209728_100134334	3300024999	Soil	LQDIINTIKISTNPNEVKQILKSLKIKDVINVAKGLNICIRGNENKTEVIGNIILEIMK
Ga0209728_100145427	3300024999	Soil	MQDIINTIKILNNPNEVKKILKPLKIKEVIKIAKGLGVCIRGNENKTEVISNIILAIMK
Ga0209728_100162530	3300024999	Soil	MQDIINTIKISNNPNEVKQILKPLKIKEVIKIAKGLGVCIRGNENKTEIINNIILGIMK
Ga0209728_10018862	3300024999	Soil	MQDIINHIKISTNPNEVKQILKPLKIKEVIKVAKGLDVYIRGNENKTEIISNIILTIIK
Ga0209728_100190530	3300024999	Soil	MQDIINTIKISTNPKEVKQILKPLKIKEVIKVAKGLDIYIRGNENKTEVIGNIILGIVKGEND
Ga0209728_100192625	3300024999	Soil	MQDIINTIKLSTNPNEVKQVLKPLKIKEVIKIAKGLDVQIRGNENKIEIISNIILGIMK
Ga0209728_100198014	3300024999	Soil	MQDIINTIKISNNPNEVKQILKSLKIKDVIKVAKCLGIFIRGNENKTEIINNIILGIMKG
Ga0209728_100221429	3300024999	Soil	MQDIINTIKISTNHNEVKQILKPLKIKEVIKIAKGLGICIRGNENKTEVINNIILGIMKGESI
Ga0209728_10022256	3300024999	Soil	MQDIINTIKISTNPNEVKKILKPLKIKEVINVAKGLNVYIRGNENKTEIISNIILTIVK
Ga0209728_100224617	3300024999	Soil	MQDIINTIKISNNPKEVKQILKPLKIKEVIKIAKGLDVYFRGNENKTEIISNIILEIMKG
Ga0209728_100246624	3300024999	Soil	MQDVINTIKISNNPNEVKKILKPLKIKEVIKVAKCLGISIRGSENKTEIIGNIILEIMRG
Ga0209728_10025854	3300024999	Soil	MQDIINTIKTSNNPNEVKQILKPLKTKEVIKIAKCLGICIRGNENKTEIINNIILEIMK
Ga0209728_100264317	3300024999	Soil	MQDIINTIKISTNPNEIKQILKPLKIKEVIKIAKGLGVCIRGNENKTEIINNIILGIIK
Ga0209728_100305319	3300024999	Soil	MQNIVNMIKITNDPNKVKQLLKPLKIKDVIKIAKDLDICIRGNENKTEIINNIILEIMK
Ga0209728_100306716	3300024999	Soil	MRGVREVKIMQDIINTIKTSTNPNEVKQILKPLKIKEVIKIAKGLDVCIRGNENKTEIINNIILGIMK
Ga0209728_100340017	3300024999	Soil	MQDIINTIKISTNSKEVKQILKPLKIKEVVKIAKGLDICIRGNENKTEIISNIILEIMK
Ga0209728_10038945	3300024999	Soil	MQDIINTIKISNNPNEVKQILKPLKIKEVIKVAKGLNICIRGNENKTEVIGNIILAVIKE
Ga0209728_100405518	3300024999	Soil	MQNIINTIKVSTNPNEVKQILKPLKIKEVIKVAKVLNVYIRGNENKTEVIGNIILEVVKE
Ga0209728_100473216	3300024999	Soil	MQDIINTIKLSTNPNEIKQILKPLKIKEVIKIAKGLNVCIRGNENKTEVINNIILGIIK
Ga0209728_100588811	3300024999	Soil	MQDIINIIKISNNPNEIKQILKPLKIKDVIKIAKCLGISVRGNENKTEIIGNIILAIVKGESI
Ga0209728_10073696	3300024999	Soil	MQDIINTIKISNNPNEVKQILKPLKIKEVIKIAKCLDVYIRGNENKTEIICNIILGIIK
Ga0209728_10073768	3300024999	Soil	MQNIINTIKISTNPNEVKQILKPLKIKEIIKVAKCLNVCIRGNENKTEVIGNIILTIVK
Ga0209728_10074036	3300024999	Soil	MQNIINYIKISNNPNEIKQILKPLKIKEVIKVAKCLNLPVRGNENKTEIIGNIILEIVK
Ga0209728_10080431	3300024999	Soil	MQDIINTIKISSNPNEIKKILKSLKIKEVIKVAKDLGICIRGNENKTEVISNIILGIIK
Ga0209728_10082667	3300024999	Soil	MQDIINIIKIFTNPNEVKQILKPLKIKEVIKIAKCLGICIRGNENKTEIINNIILGTIK
Ga0209728_10085002	3300024999	Soil	MQDIINTIKNLNDSNEVKQILKPLKIKEVIKIAKCLNVCFRGNENKTEIISNIILEIMK
Ga0209728_10101378	3300024999	Soil	MQDIINTIKTSNNPNEIKQILKQLKIKEVIKIAKGLGVCIRGNENKTEIISNIILEIMK
Ga0209728_10139085	3300024999	Soil	MQDIINTIKESTNIEEVKQLLKPLKRKDVLKVANGLYVHVRGNENKTEIICNIILANTK
Ga0209728_10159384	3300024999	Soil	MQDIINTIKISTNPNEVKQILKPLKIKEVIKIAKGLEIFIRGNENKTEIINNIILGIMK
Ga0209728_10164434	3300024999	Soil	MQNIINTIKLSNNTNEVKQILKSLKIKDVINVAKCLNVYIRGNENKTEVIGNIILAVVKE
Ga0209728_10184464	3300024999	Soil	MQDIINTIKISNNPNEIKQILKPLKIKEVIKIAKGLDICIRGNENKTEIISNIILAII
Ga0209728_10220014	3300024999	Soil	MQDVINTIKTSNNSKEVKQILKPLKIKEVIKVAKGLDVCIRGNENKTEIISNIILGIVK
Ga0209728_10220931	3300024999	Soil	MQDIINTIKISTNSNEIKQILKPLKIKEVIKIAKGLDIYIRGNENKTEIINNIILGIMK
Ga0209728_10231825	3300024999	Soil	MQDIINTIKISNNPNEVKQILKSLKIKDVIKVAKCLGIFIRGNENKTEIINNIILGIMK
Ga0209728_10283421	3300024999	Soil	MQDIINTIKISNNPNEVKKILKPLKIKEVINVAKGLNVYIRGNENKTEVISNIILEITK
Ga0209728_10415962	3300024999	Soil	MQDIINTIKISNNPNEVKKILKPLKIKEVVKVAKCLNVYIRGNENKTEIISNIILGIAKGKSI
Ga0209728_10428732	3300024999	Soil	MQDIINTIKISTNPNEIKQILKPLKIKEVIKIAKDLGICIRGNENKTEIINNIILGIMK
Ga0209728_10442112	3300024999	Soil	MQDIINSIKTSNNPIEVKQILKTLKIKELVKIAKDLDVCIRGNENKTEIISNIVLEIMK
Ga0209318_100099533	3300025000	Soil	MLTRCKIMQDIINIIKISNNPNEVKQILKPLKIKEVIKIAKGLDIFIRGNENKTEIISNIILEIMKG
Ga0209318_100115336	3300025000	Soil	MQDIINTIKISNNPKEVKQILKPLKIKEVIKIARGLGICFRGNENKTEIISNIILEIMK
Ga0209318_100242715	3300025000	Soil	MQDIINTIKISNNPNEVKKILKPLKIKEVIKVAKCLNVYIRGNENKTEVIGNIILEIMK
Ga0209318_100253126	3300025000	Soil	MQDIINTIKISNNPNEVKKILKPLKIKEVIKIAKCLNVYIRGNENKTEVIGNIILEIAKG
Ga0209318_10087695	3300025000	Soil	MQNIINYIKISNNPNEIKQILKPLKIKEVIKVAKCLNLPVRGNENKTEVINNIILGIIK
Ga0209318_10175842	3300025000	Soil	MQDIINTIKISNNPKEVKQILKPLKIKEVIKIAKCLNVYIRGNENKTEIISNIILGIAKG
Ga0209318_10314125	3300025000	Soil	IINTIKLSTNPNEVKQILKPLKIKEVIKIAKGLGISIRGNENKTEIISNIILTIIK
Ga0209319_10306766	3300025010	Groundwater	MQNIINTIKISNNPNEVKQILKPLKIKEVIKVAKCLDVCIRGNENKTEVIGNIILAIVKEXLLCK
Ga0209319_10386253	3300025010	Groundwater	MQDIINTIKISNNPNEVKQILKSLKIKDVIKVAKCLGIFIRGNENKTEIINNIILGIAKG
Ga0209000_100067128	3300025011	Groundwater	MLTRCKIMQDIINTIKLSNNPNEVKQILKPLKIKEVIKVAKCLDICIRGNENKTEIINNIILGIMK
Ga0209727_10370426	3300025012	Soil	MQDIINTIKISNNSNEVKQILKPLKIKEVVKIARGLGICIRGNENKTEIISNIILGIMK
Ga0208245_10434431	3300025073	Soil	MQDIINTIKISNNPNEVKQILKSLKIKDVIKVAKCLGIFIRGNENKTEII
Ga0208958_11589482	3300025117	Soil	MQDIINTIKISNNPKEVKQILKSLKIKEVIKVANGLNVKIRGNENKTEIISNIILEIIKYKGDE
Ga0265294_104739281	3300028602	Groundwater	MQNIINSIKGSTSVEEVKQLLKPLSKINTIKVAKGLGVEIRGNENKTEIINNIILVKAKK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091086

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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Geographical Distribution

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