Sample 3300001242

3300001242: Groundwater microbial communities from Rifle, Colorado - Groundwater E2

Overview

Basic Information
IMG/M Taxon OID	3300001242 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0054404 \| Ga0000966
Sample Name	Groundwater microbial communities from Rifle, Colorado - Groundwater E2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	167635681
Sequencing Scaffolds	36
Novel Protein Genes	36
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1
Not Available	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	2
Niallia → unclassified Niallia → Niallia sp. MER 6	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Congzhengia → Congzhengia minquanensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. SYSU D00873	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017253	Metagenome	242	Y
F048726	Metagenome / Metatranscriptome	147	Y
F057792	Metagenome	135	Y
F071896	Metagenome / Metatranscriptome	121	N
F071990	Metagenome / Metatranscriptome	121	Y
F082866	Metagenome / Metatranscriptome	113	Y
F084915	Metagenome	111	Y
F091086	Metagenome	107	Y
F098345	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
C687J13896_1000933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	17584	Open in IMG/M
C687J13896_1002003	All Organisms → cellular organisms → Bacteria	9879	Open in IMG/M
C687J13896_1002174	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9250	Open in IMG/M
C687J13896_1002224	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9077	Open in IMG/M
C687J13896_1002368	All Organisms → cellular organisms → Bacteria	8553	Open in IMG/M
C687J13896_1002786	All Organisms → cellular organisms → Bacteria	7438	Open in IMG/M
C687J13896_1004006	All Organisms → cellular organisms → Bacteria	5432	Open in IMG/M
C687J13896_1004023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5405	Open in IMG/M
C687J13896_1004347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5050	Open in IMG/M
C687J13896_1004659	All Organisms → cellular organisms → Eukaryota	4762	Open in IMG/M
C687J13896_1004696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	4739	Open in IMG/M
C687J13896_1006054	Not Available	3782	Open in IMG/M
C687J13896_1007070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	3308	Open in IMG/M
C687J13896_1008312	All Organisms → Viruses → Predicted Viral	2864	Open in IMG/M
C687J13896_1009809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	2474	Open in IMG/M
C687J13896_1012159	Not Available	2044	Open in IMG/M
C687J13896_1012210	All Organisms → Viruses → Predicted Viral	2037	Open in IMG/M
C687J13896_1013447	All Organisms → Viruses → Predicted Viral	1866	Open in IMG/M
C687J13896_1014116	Not Available	1785	Open in IMG/M
C687J13896_1014123	Niallia → unclassified Niallia → Niallia sp. MER 6	1784	Open in IMG/M
C687J13896_1014463	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1736	Open in IMG/M
C687J13896_1015999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Congzhengia → Congzhengia minquanensis	1561	Open in IMG/M
C687J13896_1020127	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. SYSU D00873	1225	Open in IMG/M
C687J13896_1022843	Not Available	1074	Open in IMG/M
C687J13896_1022867	Not Available	1073	Open in IMG/M
C687J13896_1023313	Not Available	1049	Open in IMG/M
C687J13896_1025796	Not Available	943	Open in IMG/M
C687J13896_1027389	Not Available	888	Open in IMG/M
C687J13896_1028151	Not Available	864	Open in IMG/M
C687J13896_1028694	Not Available	847	Open in IMG/M
C687J13896_1029054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	838	Open in IMG/M
C687J13896_1030369	Not Available	802	Open in IMG/M
C687J13896_1034908	Not Available	698	Open in IMG/M
C687J13896_1037011	Not Available	659	Open in IMG/M
C687J13896_1037531	Not Available	650	Open in IMG/M
C687J13896_1041827	Not Available	585	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J13896_1000933	C687J13896_100093313	F048726	MTSFIGRELTANQAEQNVTLDMGFINLIVNDSANIVTISFDIASASAANNLMILKAGESRQNVAVPFKKLYYKAAADASAMRIEGLTKAPF*
C687J13896_1002003	C687J13896_100200311	F057792	MTAKSNTRELHIASINALLVKHGAKLDRYGTYKLGNYKFDTRAVNLKIFSGKIKIKSTPMMKVDLELLERLLKIYEKEVES*
C687J13896_1002174	C687J13896_100217410	F071990	MAEPTTRFRKIPLATTTAALDTAAERLAAIASEAVVSTASGNEADFGTVDISGGAANSGIQTILWDVTADGGNTKVETFKLWLSSNGFDQAGSVIKMQPLSGGDQASPSNTQNYVANAVVGSYTWATMPETEPAQNVWPTDEGADMVLSTTSDDVVMWAMYAAIAASETTGTYKGTDAGYELQFSFKYSYS*
C687J13896_1002224	C687J13896_10022248	F071896	MARKDIKLDNINYTIDPDVKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLANLEAEELKEEILKLPDGNKELLAELAISEYSNLKGSVIDTIEDETKVKISLIKEDEKANKENQDKNKTK*
C687J13896_1002368	C687J13896_10023688	F048726	MTNFIGRSLVVNELEQNVELNIEFINLIVNDSANIVTLSFDIASASAANNLMVLKAGESRTNIAVPFKKLYYKAAADASAMRIEGLAKAPF*
C687J13896_1002786	C687J13896_10027868	F071990	MAEPTTRFRKIPLATATTALDTAAERLAAIASEAVVSTGSGNEADFGTVDISGGAANSGVQTILWDVTADGGNTKVETFKLWLSSNGFDQAGSVIKMQPLSGGDQASPSNTQNYVANAVVGSYTWATMPETEPAQNVWPTDEGADMVLSTTSDDVVMWAMYAAIAASETTGTYKGTDAGYELQFSFKYSYS*
C687J13896_1004006	C687J13896_10040062	F071896	MAKTTKSNEFNTIDPDIKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLASLDAEELKEEIANLPDGNKELLAELAITDYDNLRGSVINTIEDETKVKISLMKEDEKANKQNQEKNK*
C687J13896_1004023	C687J13896_10040232	F048726	MANNFIGRSLVANLAEQNVELNMAFINLIVNDSANTITVTFDEATTSSNVMVFKAGEQRTNIPVPFEKLYYKASADTSAFRIEGLAKAPF*
C687J13896_1004347	C687J13896_10043473	F071896	MAKTIDYKSTDPDPDTKVKIISNTHSKIYWIQLNSRPINLLRIGTPASLSYLELENMAYTSDLIQTGDVYVADKNVFEALQLQNVKYEDIKLSSELKKMLSLSSEELKEEMQKLPEGNKELLAELALANYSDLKGSVIDVIEEETNIKVTLVKEDEKANKENQKKNTK*
C687J13896_1004659	C687J13896_10046594	F082866	MHHYRPNRKRTLNLSLHKASGPGKFCVLSQIEPQTPRLVVPFRQCFQVSVLQPYFPQSLKPSGFLGTASTAPAV*
C687J13896_1004696	C687J13896_10046965	F071896	MVTKKIQPLDADTKVRIINNSNSKIHWIQLNGRPITLLKIGTPSTLPFIELENMAYTSDLIQTGDIYVQDKNVYDQLGLNVKYEDIKLHTQLKLMLANLSSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDTIEDGTKVKVTLIKEDEKANKQNQQKNEK*
C687J13896_1006054	C687J13896_10060543	F057792	MTKITRENHIASINALLVKYGAVLDRYGTYKLGNYKFDTRAVNLKIFSGKIKIKSIVMTKLTLDSLEKLLKIYAKEAELR*
C687J13896_1007070	C687J13896_10070709	F091086	MQDIINTIKISNNPKEVKQILKPLKIKEVIKIARGLGICFRGNENKTEIISNIILEIMK*
C687J13896_1008312	C687J13896_10083122	F048726	MTNFIGRSLTANQLEQNVELNMEFISLIVNDSANTITVSFDIASASASGNVMVLKTKESRENLPIPFGKLYYKANVDTSAMRIEGLAKAPF*
C687J13896_1009809	C687J13896_10098095	F048726	MTNFIGRSLTANQAEQNVELNMAFINLIVNDSASVVTLSFDIASASASGNLMVLKXGEARENXAVPFGKLYYKAAADASALRIEGLAKAEF*
C687J13896_1012159	C687J13896_10121593	F071896	MAKTTQSKNQSNDFNTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLAILNLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIVDYDNLRGSVVNTIEDETKVKISLMKEDEKANKENQEKNKK*
C687J13896_1012210	C687J13896_10122104	F091086	MQDIINIIKISNNPNEVKQILKPLKIKEVIKIAKGLDIFIRGNENKTEIISNIILEIMKG
C687J13896_1013447	C687J13896_10134472	F048726	MATSFIGRDLVANLAEQNVELNMAFINLIVNDSQNTITITFDEATTSSNVMVFKAGEQRTNIPVPFEKLYYKASADTSALRIEGLSKVPF*
C687J13896_1014116	C687J13896_10141162	F048726	MNFIGRSLTANITEQNVELNMAFINLIINDSVNTITLSFDVASASAGGNLMVFKAGEQRTNIAVPFEKLYYKADVDTSALRIEGLAKAPF*
C687J13896_1014123	C687J13896_10141234	F091086	MQDIINTIKISNNPNEVKKILKPLKIKEVIKVAKCLNVYIRGNENKTEVIGNIILEIMK*
C687J13896_1014463	C687J13896_10144632	F048726	MTNFIGRNLTANEIEQNVELNMAFINLIVNDSINIVTLSFDIASASAANNLMVLKAGESRTNIAVPFKKLYYKAAADASAMRIEGLAKAEF*
C687J13896_1015999	C687J13896_10159992	F048726	MATNFVSRELVANIQEQNVELNIAFINLIVNDSANTIKVSFDEAVGTNLMVLKAGESRTNIAVPFKKLYYKADVDASAMRIEGLTKAPF*
C687J13896_1020127	C687J13896_10201271	F017253	CVEPAKNCQRRQLGVGVNVGSYTQGRTAGDFLSSRKAARTESCPPKTTAAALDG*
C687J13896_1022843	C687J13896_10228431	F048726	MATNFVGRELQANIAEQNVELNIAFINLIVNDSPNVIKVSFDETITTNVMVLKAGESRTNIAVPFKKLYYKANVDASAMRIEGLTKASF*
C687J13896_1022867	C687J13896_10228672	F071896	MAKITKTNDFNTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLAIINLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIVDYDNLRGSVVNTIEDETKVKISLMKEDEKANKENQEKNKK*
C687J13896_1023313	C687J13896_10233131	F071896	MARKDTKLDNINYTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDALGIINLKHEDIKLHSELKRMLANLEAEELKEEISKLPEGNKELLAELAIVDYNNLKGSVIDTIEDETKVNISLIKEDEKANKENQEKNKK*
C687J13896_1025796	C687J13896_10257962	F048726	MATSFIGRSLVANIQEQNVELNMAFINLIVNDSINTITLSFDIASASAGGNLMVFKAGEQRTNIPVPFGKLYYKADVDTSAFRIEGLSKVPF*
C687J13896_1027389	C687J13896_10273891	F071896	VRIINNSNSKIHWIQLNGRPITLLKIGTPSTLPFIELENMAYTSDLIQTGDIYVQDKNVYDQLGLNVKYEDIKLHTQLKLMLANLSSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDTIEDGTKVKVTLIKEDEKANKQNQQKNEK*
C687J13896_1028151	C687J13896_10281511	F071896	MARKDTQFKNDFNTMSIDPDIKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLASLNAEELKEEISKLPDGNKELLAELAISEYSNLKGSVIDTIEDETK
C687J13896_1028694	C687J13896_10286941	F098345	MQKPKNIKNLIHSASILNSLYLGKEIVYTGTGHSLRPYRGEIINIAYYSDLEPVPYAEIKLKLWNSRTVTKILPLSDIVLVSSLKKTKTKKSKVAA*
C687J13896_1029054	C687J13896_10290542	F048726	MTNFIGRSLTANIAEQNVELNMAFINLIVNDSANTITLSFDVASASAGGNLMVFKAGEQRTNISVPFKKLYYKADADTSAMRIEGLAKAPF*
C687J13896_1030369	C687J13896_10303692	F071896	NNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDVFNALGIISLKHEDIKLHSELKRMLANLDAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLIKEDEKANKQNQEKNK*
C687J13896_1034908	C687J13896_10349082	F071896	LNGRPINLMKIAAPASLPYVELENMAYTSDLIQIGDIYVPDKDVFDALGIISLKHEDIKLHSELKRMLAILDAEELKEEITKLPDGNKELLAELAIGDFDNLRGSVINTIEEETKVKISLMKEDEKANKQNQEKNK*
C687J13896_1037011	C687J13896_10370111	F084915	MEELKEWLINEINSINKDYHNESTYMWTKGFKKALLEVLDKIKKIENEKSNTKK*
C687J13896_1037531	C687J13896_10375312	F048726	MTNFIGRSLVANIAEQNIELNMEFINLIVNDSVNNITLSFDVASASAANNLMVLKAGESRTNIAVPFKKLYYKADVDTSAMRIEGLAKAPF*
C687J13896_1041827	C687J13896_10418272	F071896	IINNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDVFNALGIISLKHEDIKLHSELKRMLANLDAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQEKNKK*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001242: Groundwater microbial communities from Rifle, Colorado - Groundwater E2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences