NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091151

Metagenome / Metatranscriptome Family F091151

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091151
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 49 residues
Representative Sequence VRPGLDNRFLLGGPSSGPRLPREDRAGWHHIGGQDVELTLYRRRGYRIVF
Number of Associated Samples 84
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 69.81 %
% of genes near scaffold ends (potentially truncated) 71.03 %
% of genes from short scaffolds (< 2000 bps) 98.13 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.458 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(62.617 % of family members)
Environment Ontology (ENVO) Unclassified
(88.785 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(62.617 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 25.64%    Coil/Unstructured: 74.36%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.46 %
All OrganismsrootAll Organisms6.54 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005367|Ga0070667_101823229Not Available572Open in IMG/M
3300005617|Ga0068859_102284523Not Available596Open in IMG/M
3300005719|Ga0068861_102276801Not Available543Open in IMG/M
3300005844|Ga0068862_101095271Not Available791Open in IMG/M
3300009973|Ga0105136_107831Not Available630Open in IMG/M
3300009975|Ga0105129_104095Not Available805Open in IMG/M
3300009976|Ga0105128_104566Not Available801Open in IMG/M
3300009976|Ga0105128_107489Not Available698Open in IMG/M
3300009976|Ga0105128_118082Not Available539Open in IMG/M
3300009980|Ga0105135_123404Not Available556Open in IMG/M
3300009984|Ga0105029_101086Not Available1630Open in IMG/M
3300009987|Ga0105030_111193Not Available775Open in IMG/M
3300009989|Ga0105131_108723Not Available839Open in IMG/M
3300009989|Ga0105131_122305Not Available634Open in IMG/M
3300009990|Ga0105132_113579Not Available727Open in IMG/M
3300009995|Ga0105139_1007264Not Available1319Open in IMG/M
3300009995|Ga0105139_1030414Not Available867Open in IMG/M
3300009995|Ga0105139_1098476Not Available561Open in IMG/M
3300010371|Ga0134125_11917279Not Available644Open in IMG/M
3300010371|Ga0134125_12537350Not Available557Open in IMG/M
3300010397|Ga0134124_11542042Not Available693Open in IMG/M
3300010399|Ga0134127_11880218Not Available675Open in IMG/M
3300010400|Ga0134122_13115053Not Available518Open in IMG/M
3300015273|Ga0182102_1038430Not Available533Open in IMG/M
3300015297|Ga0182104_1097944Not Available543Open in IMG/M
3300015297|Ga0182104_1114450Not Available512Open in IMG/M
3300015301|Ga0182184_1054152Not Available623Open in IMG/M
3300015310|Ga0182162_1084267Not Available592Open in IMG/M
3300015315|Ga0182120_1103495Not Available566Open in IMG/M
3300015315|Ga0182120_1124488Not Available526Open in IMG/M
3300015317|Ga0182136_1034077Not Available839Open in IMG/M
3300015317|Ga0182136_1098683Not Available579Open in IMG/M
3300015320|Ga0182165_1109771Not Available567Open in IMG/M
3300015324|Ga0182134_1050274Not Available754Open in IMG/M
3300015325|Ga0182148_1097971Not Available588Open in IMG/M
3300015326|Ga0182166_1075453Not Available644Open in IMG/M
3300015328|Ga0182153_1149614Not Available507Open in IMG/M
3300015329|Ga0182135_1081942Not Available646Open in IMG/M
3300015329|Ga0182135_1089084Not Available626Open in IMG/M
3300015331|Ga0182131_1012053Not Available1210Open in IMG/M
3300015331|Ga0182131_1023901Not Available984Open in IMG/M
3300015332|Ga0182117_1142325Not Available543Open in IMG/M
3300015332|Ga0182117_1162769Not Available512Open in IMG/M
3300015334|Ga0182132_1051635Not Available804Open in IMG/M
3300015335|Ga0182116_1093916Not Available664Open in IMG/M
3300015335|Ga0182116_1132541Not Available576Open in IMG/M
3300015336|Ga0182150_1111063Not Available593Open in IMG/M
3300015349|Ga0182185_1216936Not Available580Open in IMG/M
3300015353|Ga0182179_1008206All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum2061Open in IMG/M
3300015353|Ga0182179_1045667Not Available1176Open in IMG/M
3300017408|Ga0182197_1074446Not Available659Open in IMG/M
3300017408|Ga0182197_1119723Not Available551Open in IMG/M
3300017412|Ga0182199_1134378Not Available594Open in IMG/M
3300017432|Ga0182196_1075722Not Available647Open in IMG/M
3300017440|Ga0182214_1062878Not Available756Open in IMG/M
3300017445|Ga0182198_1127574Not Available604Open in IMG/M
3300017446|Ga0182217_1088768Not Available724Open in IMG/M
3300017447|Ga0182215_1081546Not Available709Open in IMG/M
3300017693|Ga0182216_1064722Not Available817Open in IMG/M
3300017693|Ga0182216_1147582Not Available595Open in IMG/M
3300017693|Ga0182216_1197696Not Available529Open in IMG/M
3300025936|Ga0207670_10204159Not Available1503Open in IMG/M
3300026118|Ga0207675_100945561Not Available879Open in IMG/M
3300028056|Ga0268330_1025722Not Available689Open in IMG/M
3300028058|Ga0268332_1028723Not Available722Open in IMG/M
3300028062|Ga0268342_1037548Not Available535Open in IMG/M
3300028062|Ga0268342_1040984Not Available520Open in IMG/M
3300028064|Ga0268340_1008724All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1062Open in IMG/M
3300028064|Ga0268340_1081684Not Available514Open in IMG/M
3300028141|Ga0268326_1000307All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1583Open in IMG/M
3300028142|Ga0268347_1034602Not Available503Open in IMG/M
3300028143|Ga0268348_1015163Not Available597Open in IMG/M
3300028154|Ga0268341_1024904Not Available544Open in IMG/M
3300028381|Ga0268264_11563123Not Available670Open in IMG/M
3300028465|Ga0268301_102685Not Available644Open in IMG/M
3300028525|Ga0268305_111899Not Available509Open in IMG/M
3300028526|Ga0268339_1013776Not Available570Open in IMG/M
3300028527|Ga0268335_1012949Not Available563Open in IMG/M
3300032465|Ga0214493_1110118Not Available651Open in IMG/M
3300032465|Ga0214493_1130477Not Available589Open in IMG/M
3300032466|Ga0214503_1212434Not Available601Open in IMG/M
3300032514|Ga0214502_1132250Not Available957Open in IMG/M
3300032548|Ga0214483_1026606Not Available958Open in IMG/M
3300032589|Ga0214500_1054828Not Available1103Open in IMG/M
3300032592|Ga0214504_1086999Not Available610Open in IMG/M
3300032625|Ga0214501_1079129Not Available1041Open in IMG/M
3300032697|Ga0214499_1075846All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1016Open in IMG/M
3300032697|Ga0214499_1225318Not Available579Open in IMG/M
3300032698|Ga0214485_1034505Not Available961Open in IMG/M
3300032758|Ga0314746_1097858Not Available675Open in IMG/M
3300032760|Ga0314754_1015436Not Available1175Open in IMG/M
3300032761|Ga0314733_1070206Not Available669Open in IMG/M
3300032790|Ga0314731_1045585Not Available733Open in IMG/M
3300032790|Ga0314731_1074601Not Available551Open in IMG/M
3300032791|Ga0314748_1077783Not Available704Open in IMG/M
3300032822|Ga0314740_1062425Not Available556Open in IMG/M
3300032823|Ga0314723_1070021All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum666Open in IMG/M
3300032825|Ga0314724_117223Not Available722Open in IMG/M
3300032844|Ga0314743_1075488Not Available784Open in IMG/M
3300032890|Ga0314747_1027169All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum866Open in IMG/M
3300032916|Ga0314734_1031719Not Available1046Open in IMG/M
3300032953|Ga0314729_109423Not Available793Open in IMG/M
3300032953|Ga0314729_111542Not Available715Open in IMG/M
3300033525|Ga0314758_1197902Not Available544Open in IMG/M
3300033532|Ga0314767_1127683Not Available638Open in IMG/M
3300033538|Ga0314755_1074016All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta860Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere62.62%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere13.08%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated11.21%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.87%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300009973Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaGHost-AssociatedOpen in IMG/M
3300009975Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaGHost-AssociatedOpen in IMG/M
3300009976Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009984Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaGHost-AssociatedOpen in IMG/M
3300009987Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300015273Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017440Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017446Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028056Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028062Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028064Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028141Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028142Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028143Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028154Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028465Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028525Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028526Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028527Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300032465Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032466Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032514Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032548Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032589Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032592Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032625Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032697Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032698Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032758Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032760Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032761Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032790Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032791Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032822Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032823Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032825Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032844Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032890Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032916Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032953Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033525Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033532Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033538Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070667_10182322913300005367Switchgrass RhizosphereVRPGLDSRFLLGGPSSGPRLPREDRAGWRHIGGQDVELTLYHRRGYRIVFRTQ
Ga0068859_10228452313300005617Switchgrass RhizosphereVRPGLDNRFLLGGPSSGPRLPREDRAGWHHIGGQDVELTLYRRRGY
Ga0068861_10227680113300005719Switchgrass RhizosphereVRPGLDSHFLLGGPSSGPRLPREDWAGWRHIGGQDVELT
Ga0068862_10109527113300005844Switchgrass RhizospherePGLDSRFLQVGPSSGPRLPREDWAGWHHIGGQDV*
Ga0105136_10783113300009973Switchgrass AssociatedVHPGLDSRFLLGGPSSGPHLPCEDRAGWHHIGGQDVELT
Ga0105129_10409513300009975Switchgrass AssociatedVRPGLDNRFLLGGPSSGPRLPREDRVGWRHIGGQDVELTLYRRHGYHIVFRTRS*
Ga0105128_10456613300009976Switchgrass AssociatedVRPGLDSRFLQVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRIVFRTQF*
Ga0105128_10748913300009976Switchgrass AssociatedVRPELDNCFLLGGPSSGPHLSHEDRAGWHHIGGQDVKLTLYRRRG
Ga0105128_11808213300009976Switchgrass AssociatedRFLLGGPSSGPRLPREDRAGWHHISGQDVELGLLVQL*
Ga0105135_12340413300009980Switchgrass AssociatedMSVRPGLDSRFLLGGPSSGPRLPREDRAGWHHIGGQDVELTLYRRR
Ga0105029_10108613300009984Switchgrass RhizosphereVRPGLDSRFLQVGPSSGPRLPREDWAGWHHIGGQDVELTFYRRRSYRIVFRTQF*
Ga0105030_11119313300009987Switchgrass RhizosphereVRPGLDSRFLQVGPSSGPRLPREDRAGWRHIGGQDVELCLYHRRGYRIVFRTQF*
Ga0105131_10872313300009989Switchgrass AssociatedVRPGLDNHFLLVGPSSGPRLPREDRTGWPHIGGQDVELTLYRR
Ga0105131_12230513300009989Switchgrass AssociatedVRPGLDSRFLRVGPSSGPHLPREDRACWHHIGGQDVKLTLYRRRGYRIVFR
Ga0105132_11357913300009990Switchgrass AssociatedVRPGLDSRFLRVGLSSGPRLPREEWAGWHHIGGQDVE
Ga0105139_100726413300009995Switchgrass AssociatedPLTSRRSVRPGLDNRFLRVGPSSGPRLSREDRAGWHHIGGQDVELTLYRRS*
Ga0105139_103041413300009995Switchgrass AssociatedVRPGLDNRFLLGGPLSGPRFPREVRADWHHIGGQDVELTVY
Ga0105139_109847613300009995Switchgrass AssociatedVRPGLDSRFLLGGPSSGPHLPREDWAGWHHIGGQDVELTFYRRRGYRIVFRTQF
Ga0134125_1191727923300010371Terrestrial SoilVRPGLDSRFLLGGPSSGPCLPREDRAGWRHIGGQDVELTFYHR
Ga0134125_1253735013300010371Terrestrial SoilTSRRSVRPGLDSRFLRVGPSSRPRLPREDWASWHHIGGPDVELTLYRHRGYRIVFRTRF*
Ga0134124_1154204213300010397Terrestrial SoilSLRTSRRSVRPGLDSRFLQVGPSSGPRVPREDWAGWRHIGGQDVELTFYRHRSYRIVFRTQF*
Ga0134127_1188021813300010399Terrestrial SoilVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQNVE
Ga0134122_1311505313300010400Terrestrial SoilVRPGLDNRFLLGGPSSGPRLPREDWAGWYHIDGQDVELTLYRRRVYRIVFRTRFFKLPLCI*
Ga0182102_103843013300015273Switchgrass PhyllosphereVRPGLDSHSLQVGPSSGPRLPREGWAGWRHIGGQDVEL
Ga0182104_109794413300015297Switchgrass PhyllosphereVRPGLDNRFLLGGPSSGSRLPREVRAGWHHIGGQDVELTLY
Ga0182104_111445013300015297Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDV
Ga0182184_105415213300015301Switchgrass PhyllosphereRFLLGVPSSGSRLSREARAGWHHIGGQNVELTLYRRS*
Ga0182162_108426713300015310Switchgrass PhyllosphereYARPGLDSCFLLGGLSSGPRLPREDRAGWPHIGGQDVELTLYRRS*
Ga0182120_110349513300015315Switchgrass PhyllosphereVRPGLDNRFLLGGPSSGPRLPREDRAGWHHIGGQDVELTLYRRRGYRIVFRT
Ga0182120_112448813300015315Switchgrass PhyllosphereSVRPGLDSRFLLGGPSSGPRLPREDRAGWHHIGGQDVELTLYRRS*
Ga0182136_103407713300015317Switchgrass PhyllosphereVRPGLDNRSLLGGLSSGPRLPREDRAGWYHIGGRDVELALY
Ga0182136_109868313300015317Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWHHIGGQDVELT
Ga0182165_110977113300015320Switchgrass PhyllosphereMRSVRPGLDNHFLLGGPSSGPRLPREDRAGCHHIGGQDVELTLYRHRGYRIVF
Ga0182134_105027413300015324Switchgrass PhyllosphereRPGLDNHFLLGGPSCGPRLLREVRAGLHHIGGQDVELTLYHRS*
Ga0182148_109797113300015325Switchgrass PhyllosphereLTSRRSVRPGLDSRFLRVGPSSGPRLPHEDWASWHHIGGPDVELTLYHRHGYRIVFRTRF
Ga0182166_107545313300015326Switchgrass PhyllosphereTSRRSARPGLDNHFLLGGPSSEPRFPREVRAGWHHIGGQDVELTVYRRS*
Ga0182153_114961413300015328Switchgrass PhyllosphereRPGLDSRFLQVGPSSGPRLPREDWAGWHHISGQDV*
Ga0182135_108194213300015329Switchgrass PhyllosphereVRPGLDSRFLLGGPLSGPRLPREDWASWHHIDGQGVELTLY
Ga0182135_108908413300015329Switchgrass PhyllosphereVRPGLDSRFLQVGQSSGPRLPREDRTGWHHIGGQDVELAVYRRRGYRIVFRIQF*
Ga0182131_101205313300015331Switchgrass PhyllosphereVGPGLDNRFLQVEPSSGPHLPREDRAGWHHIGGQDVELALYRRRGYRIVF*
Ga0182131_102390113300015331Switchgrass PhyllosphereRRSVRSGLDNCFLLVGPSSGPRLPHEDRAGWHHIGGQDVELTLYRRS*
Ga0182117_114232513300015332Switchgrass PhyllosphereSVRPRLDNRFLLGGPSSGPRLPREVRAGWHHIGGQDVELTSYRHS*
Ga0182117_116276913300015332Switchgrass PhyllospherePGLDNHFLLGGPSSGPRLPREDRAGWHHIGGQNVELTLYRRRGYRSVFRTRF*
Ga0182132_105163513300015334Switchgrass PhyllosphereVRPGLDSRILLGGPSSGPCLLREDRAGWHHIGGQDVDLTLYRRRGYHIVFRTQ
Ga0182116_109391613300015335Switchgrass PhyllosphereVRPGLDNRFLQVGPSSGPRLPREDRAGWHHIGGQDVELTLYR
Ga0182116_113254113300015335Switchgrass PhyllosphereVRPGLDNHLLLGGPSSGPHLPHEDRAGWYHISRQDVELTWYRRRGYRIVFQTQF*
Ga0182150_111106313300015336Switchgrass PhyllosphereVRPGLDSRFLLGGLSSGPRLSREDWAGWHHIGGQDVELTLYDRRGYRIVF
Ga0182115_125259713300015348Switchgrass PhyllosphereFLRVGPSSGPHLPRENQSGWHHIGGHDVELTLYRRS*
Ga0182185_121693613300015349Switchgrass PhyllospherePLTSRRSARPGLDSRFLLGGPSSGPRLLREDRAGWHHIGGQDVELTLYRRRGYRIVFRTRF*
Ga0182179_100820613300015353Switchgrass PhyllosphereVHPGLDSRFLLGGPSSGPRLPHEDRAGWHHIGGQDVELTLYRRRGYRIVFLNSVFKLPLCF*
Ga0182179_104566713300015353Switchgrass PhyllosphereGLDNHFLLGGPFSGFRLLREARAGWHHIGGQNVELILYRRS*
Ga0182197_107444613300017408Switchgrass PhyllosphereVRPGLDNRFLLGGPSSGPRLPREDRAGWHHIGGHDVELTLYHRRGYRIVI
Ga0182197_111972313300017408Switchgrass PhyllosphereVHPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFYR
Ga0182199_113437813300017412Switchgrass PhyllosphereVRPGLDSRFLRVRPSSGPRLPREDRAGWYHIGGQDVELALYRRRGY
Ga0182196_107572213300017432Switchgrass PhyllosphereMHPGLGNCFLLGGLPSGPRLPREARAGWHHIGGQDVELTLYRRCSYLIVFRTRF
Ga0182214_106287813300017440Switchgrass PhyllosphereVRPGLVSRFLRVGPSSGPRLPREDRAGWRHIGGQDVELTLYRRR
Ga0182198_112757413300017445Switchgrass PhyllosphereRRSVCPGLDNRFLLGGPSSGPHLPCEDRADWPHIGGQDVELALNRRRGYRIVFRTQF
Ga0182217_108876813300017446Switchgrass PhyllosphereVRSGLDNCFLLVGPSSGPRLPHEDRAGWPHIGGQDV
Ga0182215_108154613300017447Switchgrass PhyllosphereVRPGLDNRFLLGGPSSGPRLPREDRAGWHHIGGQDVELTLYRRRGYRIVF
Ga0182216_106472213300017693Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRIVFRTQF
Ga0182216_114758213300017693Switchgrass PhyllosphereSVRPGLDNRFLRVGPSSGPRLPREDWADWHHISGQDVELTLYRRS
Ga0182216_119769613300017693Switchgrass PhyllosphereVRPGLDNRFLLGGPSSGPCLPREDRAGWHHIGGQDVELTWYRRRGYRI
Ga0207670_1020415913300025936Switchgrass RhizosphereMRPGLDNRFLLGGPSSGPSLLREDRAGWHHIGGQDVELTFYRHRSYRIVFRTQF
Ga0207675_10094556113300026118Switchgrass RhizospherePGLDSRFLRVGPLSGPHLPREDRAGWHHISGQDVELTFYRRRGYRIVFRTQF
Ga0268330_102572213300028056PhyllosphereVHPGLDSRFLLGGPSSGPRLPHEDRAGWHHIGGQDVELTLYRRRGYRIVFLNSVFKLPLC
Ga0268332_102872313300028058PhyllosphereRYVHPGLDSRFLLGGPSSGPRLPHEDRAGWHHIGGQDVELTLYRRRGYRIVFLNSVFKLPLCF
Ga0268342_103754813300028062PhyllosphereVRPGLDSRFLQVGPSSGPRLPREDWAGWHHIGGQDVELTFY
Ga0268342_104098413300028062PhyllosphereLRPGLDNRFLQVGPSSGPRLPREDRAGWHHIGGQDVELTLYRRS
Ga0268340_100872413300028064PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRFVFRT
Ga0268340_108168413300028064PhyllosphereVRPGLDSRFLLGGPSSGPRLPREDWAGWRHIGGQDVELTFYRRR
Ga0268326_100030713300028141PhyllosphereVRPGLDSRFLQVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRIVFRTQF
Ga0268347_103460213300028142PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRCSYCI
Ga0268348_101516313300028143PhyllosphereVRPGLDNHFLLGGLSSGSRLLREGRADRHHIGGQDVALTLYRRRGYR
Ga0268341_102490413300028154PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRIVF
Ga0268264_1156312323300028381Switchgrass RhizosphereVRPGLDNRFLLGGPSSGPRLPREDRAGWHHIGGQDVEL
Ga0268301_10268513300028465PhyllosphereRFLQVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRIVFRTQF
Ga0268305_11189913300028525PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRFIFRTQ
Ga0268339_101377613300028526PhyllosphereGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRIVFRTQF
Ga0268335_101294913300028527PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWCHIGGQDVELTFYRRRSYRIVF
Ga0214493_111011813300032465Switchgrass PhyllosphereVRPGLDNRFLQVGPSSGPRLSREDRAGWRHIGGQDVELALY
Ga0214493_113047713300032465Switchgrass PhyllosphereVRPRLDSRFLLGGPSCGPRLPREDRAGWRHIGGQDVELTLYHRRGYRIVFRTQF
Ga0214503_121243413300032466Switchgrass PhyllosphereRRSVRPGLDSRFLQVGPSSGPRLPREDRAGWHHIGGQDVELALYRRRGYRIVF
Ga0214502_113225013300032514Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDRAGWHHIGGQDVELTLYRRRGYRIVFRTRFLTSTVYFNSMVCI
Ga0214483_102660613300032548Switchgrass PhyllosphereVRPGLDSHFLQVGPSSGPRLPREDWAGWRHIGGQDVELTFYHRRSYRIVFQLSFELPLCV
Ga0214500_105482813300032589Switchgrass PhyllosphereRPGLDNRFLQVGPSSGPRLPREDRAGWHHIGGQDVELTLYRRRGYHIVFRTRF
Ga0214504_108699913300032592Switchgrass PhyllosphereVRPGLDSRFLLGGPSSGPRLPREDRAGWRHIGGQDVKLTFYRRRSYRIVFRTKF
Ga0214501_107912923300032625Switchgrass PhyllosphereVRPGLDNRFLQVGQSSGPHLPREDRAGWHHIGGQDV
Ga0214499_107584623300032697Switchgrass PhyllosphereDSHFLLGGLSSGPRLPREDRAGWHHIGGQDVELTLYRRRGYRIVF
Ga0214499_122531813300032697Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWHHIGGQDVELTFYRRRSYR
Ga0214485_103450513300032698Switchgrass PhyllosphereVRPGLDSRFLQVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRRSYRIVFRTQFKTSAVRLNSVVCI
Ga0314746_109785813300032758Switchgrass PhyllosphereVRPGLDSRFLLGGPSSGPRLLREDWAGWHRIGGQDVELTLYHRRGYRIVFRTQF
Ga0314754_101543623300032760Switchgrass PhyllosphereVCPGLDNRFLLGGPSSGPRLPREDWAGWHHIGGQDVELALYHRRGYRIVFRTQFLILPLC
Ga0314733_107020613300032761Switchgrass PhyllosphereVRSGLDNRFLQVGPSSGPRLPREDRAGWHHIGGQDVELTFILVGSYRIVF
Ga0314731_104558513300032790Switchgrass PhyllosphereVRPGLDNRFLRVGPSSGPRLPREDRVGWHHIGGQDVELTLYRRRGYRIVFRTRF
Ga0314731_107460113300032790Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFY
Ga0314748_107778313300032791Switchgrass PhyllosphereVRPGLDNHFLLGGLSSGSRLLREDWAGWHHIGGQDVELTLYRRRDYCIVFRTRFLNFC
Ga0314740_106242513300032822Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFYRRR
Ga0314723_107002113300032823Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLLREDRIGWHHIGGQDVELALYRRRGYRIVF
Ga0314724_11722313300032825Switchgrass PhyllosphereSLRTSRRSVRPGLDSRFLRVGPSSGPRLPREDWAGWHHIGGQDV
Ga0314743_107548813300032844Switchgrass PhyllosphereVRPGLDNRFLQVGPSSGPRLPREDRAGWHHIGGQDVELTLYRRRGYHIVFRTRF
Ga0314747_102716923300032890Switchgrass PhyllosphereVRPGLDNRFLRVGPSSGPRLPREDRVGWHHIGGQDVELTLYRRRGYRIVFRTRFLTSTVYFNSMVCI
Ga0314734_103171913300032916Switchgrass PhyllosphereLDNRFLLGGPSSGPRLPREDWAGWHHIGGQDVELALYHRRGYRIVFRTQFLILPLCF
Ga0314729_10942313300032953Switchgrass PhyllosphereVRPVLDNRFLLGGPSSGPRLPREDRAGWRHIGGQDVELTLYHRRGYRIVFRTQF
Ga0314729_11154213300032953Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLTREDWAGWHHIGGQDVELTLYHRRGYRIVFRTQFLNF
Ga0314758_119790213300033525Switchgrass PhyllosphereVRPGLDSRFLRVGPSSGPRLPREDWAGWHHIGGQDVELTLYRRRGYRIVFRTQ
Ga0314767_112768313300033532Switchgrass PhyllosphereVCPGLDSRFLLGGPSSGPRLRREDRAGWRHIGGQDVELTFYRYHSYHIVFRTQF
Ga0314755_107401613300033538Switchgrass PhyllosphereLTSRRSVRPGLDNRFLLGGPSSGSRLPREVWAGWHHIGGQDVELTLYRRS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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