NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009984

3300009984: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG



Overview

Basic Information
IMG/M Taxon OID3300009984 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114297 | Gp0127576 | Ga0105029
Sample NameSwitchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33739792
Sequencing Scaffolds32
Novel Protein Genes36
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
Not Available21
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSwitchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions
TypeHost-Associated
TaxonomyHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant surface

Location Information
LocationUSA: Austin, Texas
CoordinatesLat. (o)30.387Long. (o)-97.7301Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000255Metagenome / Metatranscriptome1449Y
F000392Metagenome / Metatranscriptome1188Y
F000698Metagenome / Metatranscriptome930Y
F000927Metagenome / Metatranscriptome831Y
F001657Metagenome / Metatranscriptome655Y
F002578Metagenome / Metatranscriptome546Y
F003605Metagenome / Metatranscriptome477Y
F004068Metagenome / Metatranscriptome454Y
F004253Metagenome446Y
F004472Metagenome / Metatranscriptome436Y
F004540Metagenome / Metatranscriptome433Y
F004718Metagenome / Metatranscriptome426Y
F007513Metagenome / Metatranscriptome349Y
F023376Metagenome / Metatranscriptome210Y
F028724Metagenome190Y
F029305Metagenome / Metatranscriptome188Y
F032517Metagenome / Metatranscriptome179Y
F032552Metagenome / Metatranscriptome179Y
F040454Metagenome / Metatranscriptome161N
F044351Metagenome154Y
F051618Metagenome / Metatranscriptome143Y
F053045Metagenome / Metatranscriptome141Y
F053835Metagenome / Metatranscriptome140Y
F059087Metagenome / Metatranscriptome134Y
F062397Metagenome / Metatranscriptome130Y
F073743Metagenome / Metatranscriptome120N
F076802Metagenome / Metatranscriptome117N
F082022Metagenome / Metatranscriptome113Y
F085070Metagenome / Metatranscriptome111Y
F085746Metagenome / Metatranscriptome111Y
F086781Metagenome / Metatranscriptome110Y
F091151Metagenome / Metatranscriptome107Y
F093512Metagenome / Metatranscriptome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105029_100099All Organisms → Viruses → Predicted Viral4229Open in IMG/M
Ga0105029_101086Not Available1630Open in IMG/M
Ga0105029_103511Not Available1051Open in IMG/M
Ga0105029_103961Not Available1007Open in IMG/M
Ga0105029_104318Not Available975Open in IMG/M
Ga0105029_104368Not Available970Open in IMG/M
Ga0105029_104439All Organisms → cellular organisms → Bacteria → Proteobacteria966Open in IMG/M
Ga0105029_105208Not Available908Open in IMG/M
Ga0105029_105623Not Available882Open in IMG/M
Ga0105029_107288Not Available801Open in IMG/M
Ga0105029_109732Not Available720Open in IMG/M
Ga0105029_109843Not Available718Open in IMG/M
Ga0105029_110542All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae700Open in IMG/M
Ga0105029_112676Not Available657Open in IMG/M
Ga0105029_112816Not Available654Open in IMG/M
Ga0105029_113037Not Available650Open in IMG/M
Ga0105029_113399All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum644Open in IMG/M
Ga0105029_113698Not Available639Open in IMG/M
Ga0105029_113882All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum636Open in IMG/M
Ga0105029_114069Not Available633Open in IMG/M
Ga0105029_114649All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium624Open in IMG/M
Ga0105029_115756All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage608Open in IMG/M
Ga0105029_117079All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum592Open in IMG/M
Ga0105029_117910Not Available581Open in IMG/M
Ga0105029_117958Not Available580Open in IMG/M
Ga0105029_118891All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri569Open in IMG/M
Ga0105029_119632Not Available561Open in IMG/M
Ga0105029_120520Not Available551Open in IMG/M
Ga0105029_120887All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum548Open in IMG/M
Ga0105029_121251Not Available544Open in IMG/M
Ga0105029_125975Not Available503Open in IMG/M
Ga0105029_126084All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105029_100099Ga0105029_1000994F003605MAVGDQAQAAGYPIVPDTGEEGRVRWGALEINRTRDFLALVKALIPTGKAAYRTAGGISSGTADPSGGNDGDIYFKIIE*
Ga0105029_100896Ga0105029_1008961F085070VTDGSCRSVLPAGSELTGGVAVVEALVLALPGRGSIDVVTGSA
Ga0105029_101086Ga0105029_1010861F091151VRPGLDSRFLQVGPSSGPRLPREDWAGWHHIGGQDVELTFYRRRSYRIVFRTQF*
Ga0105029_103511Ga0105029_1035112F004253MQDHGKQNGVSIKQLQPTVIPKRMRAASASFHYALAARWTAQRAAAELRR*
Ga0105029_103961Ga0105029_1039611F062397MCMIGLRINMGFGPSFGLWPSSFFVLALDHGPRHFMLQNRQKTCKNKVPPKYMCKRENDQ
Ga0105029_104318Ga0105029_1043181F093512MSKDDWKAVYAKDDDLKFTKAGGNKIRRTTTPPIFSSEMLDILLIE*
Ga0105029_104368Ga0105029_1043682F023376RHVEACRCGSERRRLEALGYKFDAEQAMPTTAAVRSRQTPSQDYGLAGALLGYQLDADVSAPLRITLKTFFGAAVIALIVALVRYTHTEPLPTRENVQILRTLDEFTRSASTEAGNTIPTFISSNGRLGVLTATGEPQDLVRSLLESDLRQGFCSQSVVNQVRHEYPGFYDHWPNDKLERMVLEKYPEYADRVCVLSVRFDATATDVIKYELKPRTLAGHALLWLRTLVIAGAFALACLNIYYRLIVGRMLSPVGSVA*
Ga0105029_104439Ga0105029_1044392F044351MQADRDRAVAHGGDIVRIDGKALRMDHMVRDAFWAGGQAIVLLDPGSFLDEPGGARKRPRDPLKNLRAYAPSGELAWEAEQPEHDDHYYLIESRDPLVALSFSAYRCDLDLASGRILAKTKLK*
Ga0105029_105208Ga0105029_1052081F000255MGWIGCVRREKSWRDFVARAFALIALVHPVLHRVSCGYDTIPNAPKH
Ga0105029_105623Ga0105029_1056231F004068MGVGQLHSLRQIRTRLLAQTFALIAPFQLILHRVSCSNEMVPNAPKHYETHQNKSLGSDGVDRVDLLQKILTQLCGLNFYINYNSLARFELSIVKQQNRPKCTQTLRNKTKHEFMVQWGGSGESIMKTLDTTSWYELLH*
Ga0105029_107288Ga0105029_1072881F028724RDWREIQIQNQFQKIANFKCDYLDNGSDSEFTVKTKNAQFFMNFPNIYKLWQISLI*
Ga0105029_109732Ga0105029_1097322F076802MPDPSFGAQYFDLPRPEQGMRIMGAYARRNMEDIDAIRRHTSQLEDGTAGIAYQMGLLGLAPPEQFNGGAFQQYYDQGYNAR
Ga0105029_109843Ga0105029_1098431F002578MKAPDPLHWTLNSCFGAFRTIWVHLRPFGCPMKLGAKRFELVQKFVPRRCVGVFRDERTGSTPLDPKH
Ga0105029_110542Ga0105029_1105422F032552MGLAISCSKIGQKPAKTKYLQNICANVKTTNNWAEVRMVSDFDIKFMPLSKLNRG*
Ga0105029_112676Ga0105029_1126761F000927MGSGATNFMQATSKHKLSTEIFPDFIHLYSRGDKKIKNSKQLTKINSTESFTKDLVLKFLPETSHELNILQKIFQDLTHYDKLVIQLT*
Ga0105029_112816Ga0105029_1128162F001657MGWIGSVRCEKS*HDIVARTFALIAPIDPVLYRVS*SYETITNASQHYATHQNMSFGSNVADWVHLLKKIPT*LRGTNFCINCTSSPRFAPSLMQL*NDPKQSQTLCNL*KHESRVQWSGLGAYCINCISSPCFASSLMQLRNNP*
Ga0105029_113037Ga0105029_1130371F004718MFRYYMKLGAKRVELVQLMDKFVPLSRIGIFRNERTRSTPLDPELKYWFVS*
Ga0105029_113399Ga0105029_1133991F007513VEVRETVVVTVLQQVVALPAVLLVVFSTAMDHVTEALEEVLRLHAFLAVVFVSHAVDG
Ga0105029_113698Ga0105029_1136982F040454LEFKGASPRKILKPTEEEKGQAGRPRGVGPAGLLPVGLHFFGFFFCELFDASQDYVLPNFALDSTVLPSK*
Ga0105029_113882Ga0105029_1138822F032517SLPFMNLSLSSSSIDKMVNPYSECLGLYGGGADDLVERRGGGGIPSVNLMEELLGSLIPPRSNMSLLGAGLSSSMLRGDSETECLREELADALDVNECVLLLLATNLMMPLMVTPCFTHSKTNTPGVSCRRENNISKSGIN*
Ga0105029_114069Ga0105029_1140691F004540FGALHTVWVHLGSFRNSMKLDALGELVQLMQKYVPRSHAGIFCNERTQSATLDRKLIFWCVA*
Ga0105029_114649Ga0105029_1146492F086781MRIYDIEFDIDSFLDEMEELQRARRQRQQQIHRSADLGAGSSDTSDLDD*
Ga0105029_115756Ga0105029_1157562F085746SYMQLPSDPGALKLVYELTQSGPYQGKLGIRANLDVANVIGAVRVNLSL*
Ga0105029_116663Ga0105029_1166632F053045VARTFVLIAPVHTVLHRISCSYDNITNAPKHYETYENMSLGSNGVDWVRSLQKILT*
Ga0105029_117079Ga0105029_1170791F032517ADDLVECRGGGGIPLVNLMEELLGSLIPPRSSMSLLGAGLSSSMLRGDLETECLREELADASDVDERVLLLPVMNFMRPLMVTPCCTHSKTNTPGVSCRRENNISKSGTN*
Ga0105029_117910Ga0105029_1179101F053835VHICDTPFVDGVGLVEYFCTHLIYICGFSSEEDPDFVVEDVE*
Ga0105029_117958Ga0105029_1179581F000392PAQPTSLR*N*GIFAQTCSTHLEGPYRKDSSGAHPCRAIDCA*ESRIPSPCSLKAITHATGSKIGSSRSRWNRGTEYYPVGMKTHIEYPDIFF*KYNSPYHIEMGTYVLIDLL*AGGSVAPAQPTSLR*N*GIFAQTCSTCLEGPYRKYSSGAHPCRAIDLA*
Ga0105029_118891Ga0105029_1188911F059087GVHISFTHPPSANRSPMGAVAFAIGLKLLVPTPGKNGFRAVKDTIE*
Ga0105029_119632Ga0105029_1196321F000698GPFGCITKLGAHRALLVQKFVPRSHDGIFRNERTRSTPLATKLMFWCISYHWVHSGPFGCLTKLGAKRAELVQKFVPRSRGGLFRNERTRSIPVDPKLMFWYVSYYLGAFGTIWLCYETRCEPGRTGPKVRATKSRRNFSQRRHPIHPIGP*
Ga0105029_120520Ga0105029_1205201F004718MFHYYTELGAKWVELVQLMDKFVPLSRIGIFRNEHTR
Ga0105029_120887Ga0105029_1208871F051618MCQAIEDSGDLDKLGQGFTSAYPLEKVAIGDGTIPRPTFVNKNLSAE
Ga0105029_121251Ga0105029_1212512F093512MTMSKDDWKAVYAKDDDLKLTQAEGKKIRRTTTPPIFSSEMLDILLIE*
Ga0105029_123652Ga0105029_1236521F029305PLAPKLMFWCVSSRLGPFGTISLLHETQSKTGQTGAINATVRATMFC*
Ga0105029_125975Ga0105029_1259751F004472VHLGPFGRLTKLGAKRAELAQKFVPRSRIGNFHNEQSTPLDPKLMFWCVSYYLVAFGTVRLP
Ga0105029_126084Ga0105029_1260842F073743VGSDQIRFFVDSWAVAWSAVLLLGYVAELTPWPSLKALRADSVARMMLALSAAAVLGLTLAGAREPSAILAAWAIITSSVKFLYDSLGELW*
Ga0105029_126438Ga0105029_1264381F082022VQKFVPRNRVGIFPNERTRSTPLDPKLTFWCVFHTIWVHSGLFGCLTKLGAKRAELVQMFVPRSRVRIFRNERTRSTPLDPKMTF*
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