NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092698

Metagenome / Metatranscriptome Family F092698

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092698
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 38 residues
Representative Sequence RFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV
Number of Associated Samples 91
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 95.33 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (81.308 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(24.299 % of family members)
Environment Ontology (ENVO) Unclassified
(76.636 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(90.654 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.92%    β-sheet: 0.00%    Coil/Unstructured: 81.08%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF02881SRP54_N 58.88
PF02978SRP_SPB 28.04
PF00886Ribosomal_S16 7.48
PF12806Acyl-CoA_dh_C 1.87
PF01746tRNA_m1G_MT 1.87
PF00171Aldedh 0.93
PF00448SRP54 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0541Signal recognition particle GTPaseIntracellular trafficking, secretion, and vesicular transport [U] 28.04
COG0228Ribosomal protein S16Translation, ribosomal structure and biogenesis [J] 7.48
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 0.93
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 0.93
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A81.31 %
All OrganismsrootAll Organisms18.69 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573028|GS313G0146KB_1112079429492Not Available922Open in IMG/M
2236876010|none_p0267995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter562Open in IMG/M
3300000154|SI47jul10_150mDRAFT_c1051593Not Available611Open in IMG/M
3300000159|LPaug08P2610mDRAFT_c1009362Not Available1244Open in IMG/M
3300000247|LPaug09P26500mDRAFT_1014855Not Available1196Open in IMG/M
3300000250|LPfeb09P261000mDRAFT_1000146All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter17327Open in IMG/M
3300000260|LP_A_09_P20_500DRAFT_1024513Not Available841Open in IMG/M
3300000265|LP_A_09_P04_10DRAFT_1016718Not Available1433Open in IMG/M
3300000325|SI39nov09_100mDRAFT_1054430Not Available647Open in IMG/M
3300001354|JGI20155J14468_10153904Not Available732Open in IMG/M
3300002176|JGI24820J26691_1025487Not Available1323Open in IMG/M
3300003587|JGI26256J51712_1012997All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1906Open in IMG/M
3300003596|JGI26255J51710_1006955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique3094Open in IMG/M
3300003602|JGI26262J51727_1029559Not Available1344Open in IMG/M
3300004975|Ga0066625_1367655Not Available554Open in IMG/M
3300005432|Ga0066845_10290967Not Available631Open in IMG/M
3300005432|Ga0066845_10312743Not Available607Open in IMG/M
3300005514|Ga0066866_10060944Not Available1416Open in IMG/M
3300005522|Ga0066861_10055426Not Available1404Open in IMG/M
3300005522|Ga0066861_10113961Not Available940Open in IMG/M
3300005522|Ga0066861_10222372Not Available645Open in IMG/M
3300005522|Ga0066861_10329529Not Available516Open in IMG/M
3300005523|Ga0066865_10133382Not Available914Open in IMG/M
3300005606|Ga0066835_10034628Not Available1453Open in IMG/M
3300005606|Ga0066835_10143705Not Available787Open in IMG/M
3300005934|Ga0066377_10082414Not Available948Open in IMG/M
3300005934|Ga0066377_10256313Not Available540Open in IMG/M
3300005971|Ga0066370_10246083Not Available632Open in IMG/M
3300005971|Ga0066370_10288525Not Available585Open in IMG/M
3300006024|Ga0066371_10294394Not Available509Open in IMG/M
3300006025|Ga0075474_10030664All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1894Open in IMG/M
3300006025|Ga0075474_10120215Not Available838Open in IMG/M
3300006027|Ga0075462_10258702Not Available514Open in IMG/M
3300006027|Ga0075462_10262056Not Available511Open in IMG/M
3300006076|Ga0081592_1076262Not Available1410Open in IMG/M
3300006166|Ga0066836_10132626Not Available1459Open in IMG/M
3300006166|Ga0066836_10150323Not Available1370Open in IMG/M
3300006166|Ga0066836_10416348Not Available810Open in IMG/M
3300006334|Ga0099675_1607473All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter628Open in IMG/M
3300006341|Ga0068493_10354826Not Available1354Open in IMG/M
3300006351|Ga0099953_1474500Not Available613Open in IMG/M
3300006351|Ga0099953_1537006All Organisms → cellular organisms → Bacteria944Open in IMG/M
3300006401|Ga0075506_1814067Not Available690Open in IMG/M
3300006404|Ga0075515_10038308Not Available646Open in IMG/M
3300007113|Ga0101666_1073850Not Available632Open in IMG/M
3300007144|Ga0101670_1011121Not Available1354Open in IMG/M
3300007725|Ga0102951_1037239Not Available1471Open in IMG/M
3300007954|Ga0105739_1084774Not Available715Open in IMG/M
3300009077|Ga0115552_1098677Not Available1265Open in IMG/M
3300009080|Ga0102815_10230971Not Available1019Open in IMG/M
3300009104|Ga0117902_1418119Not Available1179Open in IMG/M
3300009425|Ga0114997_10083381All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1978Open in IMG/M
3300009445|Ga0115553_1122815Not Available1085Open in IMG/M
3300009472|Ga0115554_1060413All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae1687Open in IMG/M
3300009498|Ga0115568_10465964Not Available542Open in IMG/M
3300009593|Ga0115011_10233823Not Available1371Open in IMG/M
3300009785|Ga0115001_10470523Not Available778Open in IMG/M
3300009786|Ga0114999_11129757Not Available561Open in IMG/M
3300011254|Ga0151675_1095395Not Available752Open in IMG/M
3300012522|Ga0129326_1190228Not Available1139Open in IMG/M
3300016726|Ga0182045_1165674All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1865Open in IMG/M
3300017717|Ga0181404_1079143Not Available813Open in IMG/M
3300017749|Ga0181392_1234132Not Available520Open in IMG/M
3300017760|Ga0181408_1072300Not Available907Open in IMG/M
3300019751|Ga0194029_1008099Not Available1464Open in IMG/M
3300019765|Ga0194024_1025997Not Available1262Open in IMG/M
3300020276|Ga0211509_1042413Not Available1076Open in IMG/M
3300020318|Ga0211491_1006008All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1862Open in IMG/M
3300020335|Ga0211690_1059708Not Available856Open in IMG/M
3300020352|Ga0211505_1018553All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1809Open in IMG/M
3300020388|Ga0211678_10335946Not Available610Open in IMG/M
3300020404|Ga0211659_10087613Not Available1444Open in IMG/M
3300020416|Ga0211644_10230921Not Available759Open in IMG/M
3300020438|Ga0211576_10582418Not Available559Open in IMG/M
3300020451|Ga0211473_10355572Not Available751Open in IMG/M
3300020454|Ga0211548_10087094Not Available1486Open in IMG/M
3300020456|Ga0211551_10001320All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique13553Open in IMG/M
3300020472|Ga0211579_10089712All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1852Open in IMG/M
3300020473|Ga0211625_10000511All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique46058Open in IMG/M
3300021085|Ga0206677_10113003Not Available1262Open in IMG/M
3300021087|Ga0206683_10407377Not Available679Open in IMG/M
3300021335|Ga0213867_1157594Not Available775Open in IMG/M
3300021964|Ga0222719_10269625Not Available1120Open in IMG/M
3300022925|Ga0255773_10171346Not Available1019Open in IMG/M
(restricted) 3300022931|Ga0233433_10144170Not Available1101Open in IMG/M
(restricted) 3300022931|Ga0233433_10302235Not Available657Open in IMG/M
3300024230|Ga0228638_1044140Not Available1227Open in IMG/M
3300024296|Ga0228629_1045877Not Available1183Open in IMG/M
3300024316|Ga0228654_1023928Not Available877Open in IMG/M
3300025452|Ga0209046_1075098Not Available626Open in IMG/M
3300025727|Ga0209047_1110672Not Available917Open in IMG/M
3300025767|Ga0209137_1054658All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1866Open in IMG/M
3300025810|Ga0208543_1003842All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique3936Open in IMG/M
3300025876|Ga0209223_10083957All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1795Open in IMG/M
3300025876|Ga0209223_10090457All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1705Open in IMG/M
3300025897|Ga0209425_10146811Not Available1321Open in IMG/M
3300026513|Ga0247590_1181632Not Available536Open in IMG/M
3300027501|Ga0208948_1026527Not Available1295Open in IMG/M
3300027830|Ga0209359_10154953Not Available1006Open in IMG/M
3300027830|Ga0209359_10467101Not Available583Open in IMG/M
3300027839|Ga0209403_10652123Not Available500Open in IMG/M
3300027847|Ga0209402_10659653Not Available581Open in IMG/M
3300028397|Ga0228639_1109117Not Available684Open in IMG/M
3300032006|Ga0310344_10298470Not Available1377Open in IMG/M
3300032011|Ga0315316_10166698All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1831Open in IMG/M
3300032011|Ga0315316_10877310Not Available736Open in IMG/M
3300032360|Ga0315334_10583106Not Available963Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine24.30%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine14.02%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine8.41%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous7.48%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine5.61%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater5.61%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater4.67%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.74%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.74%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine2.80%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.80%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.87%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.87%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.87%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.87%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.93%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.93%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine0.93%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.93%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine0.93%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.93%
Diffuse Hydrothermal FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids0.93%
Volcanic Co2 Seep SeawaterEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater0.93%
Volcanic Co2 SeepEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep0.93%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573028Estuarine microbial communities from Columbia River, sample from South Channel ETM site, CMGS313-FOS-0p8-ETM-15mEnvironmentalOpen in IMG/M
2236876010Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p1-Hyp-75mEnvironmentalOpen in IMG/M
3300000154Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 150mEnvironmentalOpen in IMG/M
3300000159Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10mEnvironmentalOpen in IMG/M
3300000247Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P26 500mEnvironmentalOpen in IMG/M
3300000250Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 1000mEnvironmentalOpen in IMG/M
3300000260Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P20_500EnvironmentalOpen in IMG/M
3300000265Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10EnvironmentalOpen in IMG/M
3300000325Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 100mEnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300002176Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50mEnvironmentalOpen in IMG/M
3300003587Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNAEnvironmentalOpen in IMG/M
3300003596Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNAEnvironmentalOpen in IMG/M
3300003602Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_150m_DNAEnvironmentalOpen in IMG/M
3300004975Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_100m_RNA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005432Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78EnvironmentalOpen in IMG/M
3300005514Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263EnvironmentalOpen in IMG/M
3300005522Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257EnvironmentalOpen in IMG/M
3300005523Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265EnvironmentalOpen in IMG/M
3300005606Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84EnvironmentalOpen in IMG/M
3300005934Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_BEnvironmentalOpen in IMG/M
3300005971Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_AEnvironmentalOpen in IMG/M
3300006024Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_BEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006076Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid AEnvironmentalOpen in IMG/M
3300006166Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91EnvironmentalOpen in IMG/M
3300006334Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025mEnvironmentalOpen in IMG/M
3300006341Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770mEnvironmentalOpen in IMG/M
3300006351Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045mEnvironmentalOpen in IMG/M
3300006401Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006404Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007113Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-isEnvironmentalOpen in IMG/M
3300007144Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', waterEBic1EnvironmentalOpen in IMG/M
3300007725Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MGEnvironmentalOpen in IMG/M
3300007954Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2umEnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009080Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759EnvironmentalOpen in IMG/M
3300009104Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2umEnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009445Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300011254Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02EnvironmentalOpen in IMG/M
3300012522Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016726Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011504BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020276Marine microbial communities from Tara Oceans - TARA_E500000075 (ERX289007-ERR315858)EnvironmentalOpen in IMG/M
3300020318Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556107-ERR598973)EnvironmentalOpen in IMG/M
3300020335Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)EnvironmentalOpen in IMG/M
3300020352Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)EnvironmentalOpen in IMG/M
3300020388Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020416Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020451Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)EnvironmentalOpen in IMG/M
3300020454Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)EnvironmentalOpen in IMG/M
3300020456Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)EnvironmentalOpen in IMG/M
3300020472Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)EnvironmentalOpen in IMG/M
3300020473Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022925Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaGEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024230Seawater microbial communities from Monterey Bay, California, United States - 48DEnvironmentalOpen in IMG/M
3300024296Seawater microbial communities from Monterey Bay, California, United States - 36DEnvironmentalOpen in IMG/M
3300024316Seawater microbial communities from Monterey Bay, California, United States - 66DEnvironmentalOpen in IMG/M
3300025452Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_200m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025727Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025767Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300026513Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 51R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027501Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)EnvironmentalOpen in IMG/M
3300027830Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027839Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300028397Seawater microbial communities from Monterey Bay, California, United States - 50DEnvironmentalOpen in IMG/M
3300032006Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MGEnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS313G0146KB_006521202189573028Marine EstuarineSIIVCSRFRKNVKFAVSLETKRSTLVSEGSPTSAITAVCNNYV
none_026799512236876010Marine EstuarineSIIGCCGFRKNIKFAVSLETKRSTLVSEASPTSAITAVRNKYV
SI47jul10_150mDRAFT_105159323300000154MarineGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
LPaug08P2610mDRAFT_100936213300000159MarinePRFRKNINFAVSLETKRSTLVSEASPTSVITAVRNKYV*
LPaug09P26500mDRAFT_101485513300000247MarineFRKNVKFAVSLETKRSTLVSEGSPTSAMTAVCNNYV*
LPfeb09P261000mDRAFT_100014613300000250MarineSIIGCCRFRKNINFAVSLETKRSTLVSEGSPTSAITAVRNKYV*
LP_A_09_P20_500DRAFT_102451323300000260MarineSRFRKNVKFAVSLETKRSTLVSEGSPTSAMTAVCNNYV*
LP_A_09_P04_10DRAFT_101671813300000265MarineRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV*
SI39nov09_100mDRAFT_105443023300000325MarineKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV*
JGI20155J14468_1015390413300001354Pelagic MarineFRFHKNVKFVVSLETKRSTLVSDIRPLVQTAVRNKYV*
JGI24820J26691_102548713300002176MarineVCGSFRKNVKFAVSLETKRSTLVSEGSPTSAVTAV*
JGI26256J51712_101299713300003587MarineCCGFRKNIKFAVSLETKRSTLVSEASPTSAITAVRNKYV*
JGI26255J51710_100695513300003596MarineSIIGCCGFRKNIKFAVSLETKRSTLVSEASPTSAITAVRNKYV*
JGI26262J51727_102955923300003602MarineIIGCCGFRKNIKFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0066625_136765513300004975MarineSIIVCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0066845_1029096713300005432MarineTSIIVCGSFRKNVKFAVSLETKRSTLVSEGSPTSAITAV*
Ga0066845_1031274323300005432MarineTSIIVCASFRKNVKFAVSLETKRSTLVSEGSPTSAITNA*
Ga0066866_1006094423300005514MarineRFRKNINFAVSLETKRSTLVSEGSPTSEVTAMRNKYV*
Ga0066861_1005542613300005522MarineIVCGGFRKNVKFAVSLETKRSTLVSEGSPTSAITAVCDNYV*
Ga0066861_1011396113300005522MarineRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0066861_1022237223300005522MarineFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0066861_1032952923300005522MarineSFRKNVKFAVSLETKRSTLVSEGSPTSAITAVCNKYV*
Ga0066865_1013338223300005523MarineIVCGSFRKNVKFAVSLETKRSTLVSEGSPTSAITAVCNNYV*
Ga0066835_1003462823300005606MarineIVCGSFRKNVKFAVSLETKRSTLVSEGSPTSAITAGCNNYV*
Ga0066835_1014370523300005606MarineFRKNIKFAVSLETKRSTLVSEGSPTSAIAAVCNKYV*
Ga0066377_1008241423300005934MarineRKNVKFAVSLETKRSTLVSEGSPTSAITIACNKYV*
Ga0066377_1025631313300005934MarineFRKNVKFAVSLETKRSTLVSEGSPTSAITAVCNNYV*
Ga0066370_1024608323300005971MarineTSIIVCASFRKNVKFAVSLETKRSTLVSEGSPTSAIINA*
Ga0066370_1028852523300005971MarineKNVKFAVSLETKRSTLVSEGSPTSAITAVCNKYV*
Ga0066371_1029439413300006024MarineIIVCGSFRKNVKFAVSLETKRSTLVSEGSPTSAITAVCNNYV*
Ga0075474_1003066433300006025AqueousIIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV*
Ga0075474_1012021523300006025AqueousIIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0075462_1025870213300006027AqueousSFRKNVKFAVSLETKRSTLVSEGSPTSAITIACNKYV*
Ga0075462_1026205623300006027AqueousFRKNIKFAVSLETKRSTLVSEGSPTSEITAVCNKYV*
Ga0081592_107626213300006076Diffuse Hydrothermal FluidsSRFRKNVKFAVSLETKRSTLVSEGSPTSAVTAVCNNYV*
Ga0066836_1013262613300006166MarineGSFRKNVKFAVSLETKRSTLVSEGSPTSAITAVCNKYV*
Ga0066836_1015032313300006166MarineKNINFAVSLETKRSTLVSEGSPTSAIIAVCNKYV*
Ga0066836_1041634823300006166MarineARFRKNIKFAVSLETKRSTLVSEGSPTSAITVVCNNYV*
Ga0099675_160747313300006334MarineRKSVKFAVSLETKRSTLVSEGSPTSAITAVCNKYV*
Ga0068493_1035482613300006341MarineWSRFRKNVKFAVSLETKRSTLVSEGSPTSAVTAVCNNYV*
Ga0099953_147450023300006351MarineSFRKNIKFAVSLETKRSTLVSEGSPTSAITAVCNKYV*
Ga0099953_153700633300006351MarineCGSFRKNIKFAVSLETKRSTLVSEGSPTSAVTAVCNKYV*
Ga0075506_181406723300006401AqueousFRKNVKFAVSLETKRSTLVSEGSPTSEITAVRNKYV*
Ga0075515_1003830813300006404AqueousRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0101666_107385023300007113Volcanic Co2 Seep SeawaterSFRKNVKFAVSLETKRSTLVSEGSPTSAITAVRYKYV*
Ga0101670_101112113300007144Volcanic Co2 SeepSFRKNVKFAVSLETKRSTLVSEGSPTSAITAVRNKYV*
Ga0102951_103723913300007725WaterRFRKNVKFAVSLETKRSTLVSEGSPTSAVTAVRNKYV*
Ga0105739_108477413300007954Estuary WaterRFRKNINFAVSLETKRSTLVSEASPTSEITAVRNNYV*
Ga0115552_109867723300009077Pelagic MarineSIIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0102815_1023097113300009080EstuarineSIIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV*
Ga0117902_141811913300009104MarineCCRFRKKQQFAVPLETKGSTLVSEGSPTSALVAG*
Ga0114997_1008338133300009425MarineRFRKNVKFAVSLETKRSTLVSEGSPTSAITAVRNNYV*
Ga0115553_112281523300009445Pelagic MarineKNVKFAVSLETKRSTLVSEGSPTSAITAVRNKYV*
Ga0115554_106041313300009472Pelagic MarineGFRKNVKFAVSLETKRSTLVSEGSPTSAITAVWNKYV*
Ga0115568_1046596413300009498Pelagic MarineFRKNIKFAVSLETKRSTLVSEASPTSAIIAVCDNYV*
Ga0115011_1023382313300009593MarineKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0115001_1047052313300009785MarineFRKNINFAVSLETKRSTLVSEASPTSAITAVHNKYV*
Ga0114999_1112975723300009786MarineFHKNVKFVVSLETKRSALVSEGSPTSVVTAVRNKYV*
Ga0151675_109539513300011254MarineGCGRFRKNVKFAVSWETKRSTLVSEASPTSAITAGRNKNV*
Ga0129326_119022813300012522AqueousKNVKFAVSLETKRSTLVSEGSPTSAVTAVRNKYV*
Ga0182045_116567413300016726Salt MarshRKNVKFAVSLETKRSTLVSEGSPTSAVTAVRNKYV
Ga0181404_107914313300017717SeawaterTSIIVCGSFRKNVKFAVSLETKRSTLVSEGSPTSEITAVCNKYV
Ga0181392_123413213300017749SeawaterIGCPRFRKNINFAVSLETKRSTLVSEGSPTSEIIAACNKYV
Ga0181408_107230013300017760SeawaterRFRKNINFAVSLETKRSTLVSEASPTSEITAVRNNYV
Ga0194029_100809913300019751FreshwaterSIIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0194024_102599713300019765FreshwaterFRKNVKFAVSLETKRSTLVSEGSPTSEVTAVRNKYV
Ga0211509_104241313300020276MarineRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV
Ga0211491_100600813300020318MarineRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV
Ga0211690_105970813300020335MarineRKNINFAVSLETKRSTLVSEASPTSVITAVRNKYV
Ga0211505_101855313300020352MarineRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0211678_1033594623300020388MarineRKNVKFAVSLETKRSTLVSEGSPTSEITAVCNKYV
Ga0211659_1008761323300020404MarineGCCRFRKNINFAVSLETKRSTLVSEASPTSAVTAVRNKYV
Ga0211644_1023092123300020416MarineRKNVKFAVSLETKRSTLVSEGSPTSEITAVCNNYV
Ga0211576_1058241813300020438MarineRKNINFAVSLETKRSTLVSEASPTSEITAVRNKYV
Ga0211473_1035557213300020451MarineGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVQKYV
Ga0211548_1008709413300020454MarineGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0211551_1000132013300020456MarineRKNVKFAVSLETKRSTLVSEGSPTSEVTAVCNKNV
Ga0211579_1008971233300020472MarineGCCRFRKNINFAVSLATKRSTLVSEASPTSAITAVRYKYV
Ga0211625_10000511463300020473MarineRKNVKFAVSLETKRSTLVSEGSPTSEKTAVRNKYV
Ga0206677_1011300313300021085SeawaterIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0206683_1040737713300021087SeawaterGCPRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0213867_115759413300021335SeawaterRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0222719_1026962513300021964Estuarine WaterTSIIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0255773_1017134613300022925Salt MarshFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV
(restricted) Ga0233433_1014417013300022931SeawaterSIIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVCNKYV
(restricted) Ga0233433_1030223513300022931SeawaterPRFRKNINFAVSLETKRSTLVSEASPTSEITAVRNNYV
Ga0228638_104414013300024230SeawaterSIIGCPRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0228629_104587723300024296SeawaterSIIVCGSFRKNVKFAVSLETKRSTLVSEGSPTSEITAVCNKYV
Ga0228654_102392813300024316SeawaterTSIIGCRRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV
Ga0209046_107509813300025452MarineGCCRFRKNINFAVSLETKRSTLVSEGSPTSAITAVRNKYV
Ga0209047_111067213300025727MarineRFRKNINFAVSLETKRSTLVSEASPTSAITAVCNKYV
Ga0209137_105465813300025767MarineRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYVXKFNN
Ga0208543_100384213300025810AqueousTSIIGCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV
Ga0209223_1008395713300025876Pelagic MarineFRKNINFAVSLETKRSTLVSEASPTSEITAVRNKYVXKFNK
Ga0209223_1009045733300025876Pelagic MarineRFRKNVKFAVSLETKRSTLVSEGSPTSAITAVRNKYV
Ga0209425_1014681113300025897Pelagic MarineFRKNINFAVSLETKRSTLVSEASPTSAITAVRNNYV
Ga0247590_118163213300026513SeawaterNVKFAVSLETKRSTLVSEGSPTSVITAVXNKNVXKFDK
Ga0208948_102652713300027501MarineIGCCRFRKNINFAVSLETKRSTLVSEGSPTSGITAVRNKYV
Ga0209359_1015495323300027830MarineIIVCGSFRKNVKFAVSLETKRSTLVSEGSPTSEITAVRNKYV
Ga0209359_1046710113300027830MarineTSIIGCWRFRKNINFAVSLETKRSTLVSEASPTSAITAVQKYV
Ga0209403_1065212313300027839MarineRFRKNVKFAVSLETKRSTLVSEGSPTSAITAVRNNYV
Ga0209402_1065965313300027847MarineFHKNVKFVVSLETKRSALVSEGSPTSVVTAVRNKYV
Ga0228639_110911713300028397SeawaterIGCRRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV
Ga0310344_1029847013300032006SeawaterIIVCASFRKNVKFAVSLETKRSTLVSEGSPTSAITVVRNKYV
Ga0315316_1016669813300032011SeawaterRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYVXKFNK
Ga0315316_1087731013300032011SeawaterFRKNINFAVSLATKRSTLVSEASPTSAITAVRYKYV
Ga0315334_1058310613300032360SeawaterRKNIKFAVSLETKRSTLVSEGSPTSAITAVRNKYV


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