Sample 3300004975

3300004975: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_100m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300004975 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0111058 \| Ga0066625
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_100m_RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	134308579
Sequencing Scaffolds	41
Novel Protein Genes	48
Associated Families	37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium Mf 1.05b.01	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet, Vancouver Island, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000059	Metagenome / Metatranscriptome	3008	Y
F000080	Metagenome / Metatranscriptome	2485	Y
F000351	Metagenome / Metatranscriptome	1248	Y
F000538	Metagenome / Metatranscriptome	1043	Y
F005848	Metagenome / Metatranscriptome	388	Y
F006550	Metagenome / Metatranscriptome	370	N
F006551	Metagenome / Metatranscriptome	370	Y
F008248	Metagenome / Metatranscriptome	336	Y
F012639	Metagenome / Metatranscriptome	279	Y
F014123	Metagenome / Metatranscriptome	265	Y
F015413	Metagenome / Metatranscriptome	255	Y
F016399	Metagenome / Metatranscriptome	247	Y
F016619	Metagenome / Metatranscriptome	246	Y
F020371	Metagenome / Metatranscriptome	224	Y
F021318	Metagenome / Metatranscriptome	219	Y
F021393	Metagenome / Metatranscriptome	219	N
F029567	Metagenome / Metatranscriptome	188	Y
F030135	Metagenome / Metatranscriptome	186	Y
F046004	Metagenome / Metatranscriptome	152	N
F061505	Metatranscriptome	131	Y
F065210	Metagenome / Metatranscriptome	128	Y
F066454	Metagenome / Metatranscriptome	126	N
F066733	Metagenome / Metatranscriptome	126	N
F067819	Metagenome / Metatranscriptome	125	N
F073166	Metagenome / Metatranscriptome	120	N
F074402	Metagenome / Metatranscriptome	119	Y
F081198	Metagenome / Metatranscriptome	114	N
F084341	Metagenome / Metatranscriptome	112	N
F091394	Metagenome / Metatranscriptome	107	N
F092109	Metagenome / Metatranscriptome	107	N
F092698	Metagenome / Metatranscriptome	107	N
F096688	Metagenome / Metatranscriptome	104	N
F098044	Metagenome / Metatranscriptome	104	Y
F099319	Metagenome / Metatranscriptome	103	Y
F099846	Metagenome / Metatranscriptome	103	N
F101201	Metagenome / Metatranscriptome	102	Y
F102081	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066625_1002076	Not Available	2326	Open in IMG/M
Ga0066625_1003076	Not Available	775	Open in IMG/M
Ga0066625_1004840	Not Available	1028	Open in IMG/M
Ga0066625_1005628	Not Available	882	Open in IMG/M
Ga0066625_1006587	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	513	Open in IMG/M
Ga0066625_1007070	Not Available	706	Open in IMG/M
Ga0066625_1007330	Not Available	502	Open in IMG/M
Ga0066625_1009429	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1023	Open in IMG/M
Ga0066625_1010627	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	770	Open in IMG/M
Ga0066625_1011115	Not Available	520	Open in IMG/M
Ga0066625_1011500	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
Ga0066625_1013128	All Organisms → Viruses → Predicted Viral	1192	Open in IMG/M
Ga0066625_1014979	Not Available	712	Open in IMG/M
Ga0066625_1034937	Not Available	1122	Open in IMG/M
Ga0066625_1122547	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	560	Open in IMG/M
Ga0066625_1178215	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	785	Open in IMG/M
Ga0066625_1258877	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	530	Open in IMG/M
Ga0066625_1263602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium Mf 1.05b.01	657	Open in IMG/M
Ga0066625_1340566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	586	Open in IMG/M
Ga0066625_1345371	All Organisms → cellular organisms → Eukaryota	602	Open in IMG/M
Ga0066625_1356008	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	911	Open in IMG/M
Ga0066625_1363942	All Organisms → Viruses → Predicted Viral	1271	Open in IMG/M
Ga0066625_1363951	Not Available	603	Open in IMG/M
Ga0066625_1364587	Not Available	561	Open in IMG/M
Ga0066625_1367655	Not Available	554	Open in IMG/M
Ga0066625_1368663	Not Available	668	Open in IMG/M
Ga0066625_1379869	Not Available	737	Open in IMG/M
Ga0066625_1382867	Not Available	981	Open in IMG/M
Ga0066625_1383854	Not Available	545	Open in IMG/M
Ga0066625_1386640	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	676	Open in IMG/M
Ga0066625_1388491	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	558	Open in IMG/M
Ga0066625_1389696	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	589	Open in IMG/M
Ga0066625_1390526	Not Available	513	Open in IMG/M
Ga0066625_1391534	Not Available	1642	Open in IMG/M
Ga0066625_1395280	Not Available	1151	Open in IMG/M
Ga0066625_1396891	Not Available	1312	Open in IMG/M
Ga0066625_1398402	All Organisms → cellular organisms → Eukaryota → Sar	505	Open in IMG/M
Ga0066625_1398553	Not Available	702	Open in IMG/M
Ga0066625_1398727	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	951	Open in IMG/M
Ga0066625_1398883	Not Available	1171	Open in IMG/M
Ga0066625_1400471	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	576	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066625_1000653	Ga0066625_10006531	F000080	MSFWQENYQFIKEIYEMRHSKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFQALCKDLERTEVKKWLAQILEILMAERAKSQQETENGKLDVLIKKHEELIPSVQKTSVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLSQLDAKRNVVVELIAKGKAILEHPDKPKFLEGNVKRIQEGWDDTKSKAQERLKLLTDTKEAWVGYAENNETIAAQFEVAEEEIKKVKKRYAMEDALTDMKKRQDLYNKSQNTITGLFNAINANFVCMSITLPEDKKKLIDKEVKAVDVKLEVAGRFKSAVAQIEEFCAALVAFDNSLKAVNGWMSQATAELKDIKE
Ga0066625_1002076	Ga0066625_10020761	F006550	MAKVFNTKKADYNGMQLWLNPVDKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASVIQSETGRQITGCTTPT
Ga0066625_1003076	Ga0066625_10030761	F092109	FNSTKSMCMNGQVVTTGYNSMDCSGAGMVIPMDSGATDQCLPIDISGTVYGGYIRECVGQSTSALTGTLQNMVYTNPGCQGLPVDSDSAGVGVCLFDYRRTNSTTPYIILTANATAINVMKCSDNACSLNCVSGDSILLKDLGSCTDGSQAGPLYTGLSFKSMYVPNAGSLTPVVNESPSVTAYLYKNVDECNVDKTAGRVSAQSLGAATGALDDCLGPWSSGGQFNSTKSMCMNGQVVTTGYNSMDCSGAGMVIPM
Ga0066625_1004840	Ga0066625_10048402	F021318	MAKVFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELSYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRVGMHPIDFAKYMGNTFIRG
Ga0066625_1005628	Ga0066625_10056281	F020371	NVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVISLADASLTAKAAAGAWDTFTSNTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRIGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAVIQSETGRQLTGCSTPTNWT*
Ga0066625_1006587	Ga0066625_10065871	F012639	MSANNSGIVLTCSAAFAAAAPVATVISGTMQTSPTVTAVTELQVPLTENWIATDMYILAAAGAGTPTVINPVISLDKNRGRQLVQTVPLSAMLITNNTRPRFSPNPIGFEGGSIIRTFATSTV
Ga0066625_1007070	Ga0066625_10070701	F102081	ESMLLETALESNSVNLLPKRIINPVIQAGLGATYATMIPMLEAWNCNTPLTAGATPQIQAFGQAQVANTVAPTMGVAFHWSNSRPNSPEMFYNKPDNETSTGTAATIVAGNSVTINDGKTLQAVYGAVSMGTVTASNSLLASMQFNSNDFDNSQAIEVPIQPNSVGLGGLTSALNVKGSYYKNVNMGMKATATISTVLRVSEALAAAGNFIGGVGYTKI*
Ga0066625_1007330	Ga0066625_10073301	F084341	LIVRIMGRQTDVRVQKHAFLDVGTKAYANRLEMDTGTKMQFMMPTSLMELKHVTVRGGGTEVLVSHEAPGLPVMGVPSHFPSQAKLKVAQHVWLKSNIIMSGRMRITLNNFAETRIGDDAMDAETNRPASKLIVRIMGRQTDVRVQKHAFLDVGTKAYANRLEMDT
Ga0066625_1009429	Ga0066625_10094291	F099846	GGNYNPLFGAMAWANFNMEANIFAALPKYVWDFSGWRIFKSKAPELTAVAGAIDGKGGTIEGGAIAAAVKPAVQEITVKPKTLQYVFEASELLEQLVDNSRDDNYGSLAQQRVYASDQFKERVNLMLAAKPTDVVATHALEELNLESLDVIVSASAEQAHEAHANVTSLYTPWFAANGAGVQRNGATVHDSTVKSPSGTLGTTDVLTDAVLRETLAEIRIAAGKEPTVMIGGQDTYSEVQSIYMNAYRIQNTADLRTEFSVGVNGVDTFTGTGAGLHISTIYGLPFIPSKDIGGSGTGKVDNLYILNTSADKNAPNKPLLGMQILKPIVYYEAGKRQQGY
Ga0066625_1010627	Ga0066625_10106271	F012639	MSSNNSGLVLNCTAQYAAAAPVATVLSVTMQTSPTVAGVTELQVPLTENWIATDVYILAAGGAGSATVVAPVITMDKNRGRTLVQTPPLNAMLITSNTRPRFSPQPIGFEGGSIIRMFAT
Ga0066625_1010627	Ga0066625_10106272	F015413	DMESHDLEKQVESLLATPQFEQPQFEQLIPKGILGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPSFNQEVKEVAQELNPLVKGVMW*
Ga0066625_1011115	Ga0066625_10111151	F096688	ASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARTRGIEAAGAGKRGRSC*
Ga0066625_1011500	Ga0066625_10115001	F074402	KIAIRTVDIGLLVVPKISIANTLFIPCENKQNTKAKIIPGTIDFRYWKLIDTEDLTHFYKA*
Ga0066625_1013128	Ga0066625_10131281	F101201	MASLGGLDVAYGASMQLVRTNVLVIETDGTTTKAMAEMVHSVASRKYPAALRPDFTAFVASGALTEGYATVLTDQVEGNILKDITAVPMAGSQWDSTAANNRGMSWEAILNVGVAQINANDTMTADDLFVPGTGTTSGEEVGTGEYQDASIMQGALMAAQFAVDQTTLAGNH
Ga0066625_1014979	Ga0066625_10149792	F096688	DCFLCHIQNEFRTDNEGKLMTIIKGLAVVGYASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDASEPFVQCHVAVNEAYPAAWNNWRRQNARSRGIDTAGNRRYSKGGAWC
Ga0066625_1030242	Ga0066625_10302422	F066454	MSIRFDVLILINSGVTDRSEIVARLGINIRSVSNSIRFLIKEGWVEYSRESISVVGGDSFRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGD
Ga0066625_1034937	Ga0066625_10349371	F081198	TEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLERLYGVDIIVTNELLQANNADRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYFDIVWTHRIGVDIIDPNTYI
Ga0066625_1122547	Ga0066625_11225471	F091394	DIKNHDYRQAGGDLQGVMDQLSQWTEKHACTSDFCYVVVGVFQFLGDVKGSVKTCESDFKNAWSDFESAVGHFEDSHHSIFHWTHNKEQITDGMKSLGDGMKLVAKGVSDCHIEEFAELLEKLAVKLGIAPEISGLMEVLHILINGVNIENEIGDACDDYASKNWVGFGYNVARLVKTLV
Ga0066625_1178215	Ga0066625_11782151	F008248	MKNLKLELFNFKKNLSLDQEDVALIVEGHMNACNEHAEKAIINSLNEKLRSFTYDSAVKGLLESLNDDMSNHELIYELKSLYNVLNTQNQGELYRQPINVLLQTINLESDEDRMSKVLNELAIYDWVPEIKVFVHNLTKSPEKRNNLLSGGSGESVFTIVESVEDGHIALIKDSWFLLTENVIEKTLLENHVKNEEDLFVHTGPHSDTTRSRSGRSKPDDSPQNF*
Ga0066625_1258877	Ga0066625_12588771	F016399	SLKTGIIGEVVKGIGAGSLVGMVMNRVVPNSNITPIASTAAAFLAGGVTGGAAQVVLSGGLANFGGMFGGSNQNVTAQVEHGV*
Ga0066625_1263602	Ga0066625_12636021	F066733	EVTPSTITGTYLIGDFDEIENSPFDLLQVIVEGSAASYEDFVATDMLTTITAEGTLTPGLWIRGDTGATITSSDVASMALDETGIAYGREYLENQGYLRGGVKPVCFLHPKQWRELITSTNVTSLATRSVPDIWLKAQLEELMGVQLVVTNAVEEKNNTTNDAYNAYMCVPKHSFGIGIKRDVTVKMHEIPEDNQVRVNTTWRTKAGVIDSASIVRIS
Ga0066625_1340566	Ga0066625_13405662	F014123	MGHWIVIGKAAGWDDLATFTAEMKATNKWRLNPRTTVTSVIALEDGRLLAECHAANQSDFEPWLEEKGWEVESITPIRHMAR
Ga0066625_1345371	Ga0066625_13453711	F000538	MRTKENGEYKKASAEYKQSADAVANAIQVLQAYYSQGSFVQQAPDFDGAKTDIASTIVSMLEVAESDFTRLLAESEADEKTAQASFDKLSQANAVSRAANTEEVNGKESEIKRVDMSLLNYKEDHATTGKELDSVLDYLDKLKPQCESKVMSYAERVSRREAEIQGLKEALEILA*
Ga0066625_1354900	Ga0066625_13549001	F073166	MNLNYKHLGMYLVVGIASGLLCHLIYTSHDVWQYVGPSLVLGAMIALAGRYISGITPRNPWLNPLVLILACGVGWFLAFQHGVNGGFYIWPVESGVIGGFFVGIGLVIAWRLKRIWMVIMLTTLAGGLGGLVFALSDFFGFDEFFPLFITWQGILLLGIGIAIQIDSRKSSIF*
Ga0066625_1356008	Ga0066625_13560081	F029567	IVLVYLTFLTGCSVLPEMIAPTANFGLGLYNADSYYSKECLWYEPVQLSAETKEWITKNKPTGVVVKDLAKIARNNDLFKEVCK*
Ga0066625_1363942	Ga0066625_13639421	F081198	EKVKVTIETDGEVEVADKAKEVAPVEKEVEAPAKEVAPEIKTESTDALVKATKGLTAVIEAAQPSWTPKSEVSESSDDSFVDEGFTDDQAKQFMDKLFETGYNKIVMEKEDWITEHTIPGRVTENGSVTEAVSTSGTISGVKQRSNIKVQLGAKTATPLRQYGQFESIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTSVDVTCSIRGWRQTVEKANLEDYPASFLNALRETARLESIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTDPTEEDADGAFDEDGLTKAKMYLGKLGQNTAPGNLIAFLSEEAFESLYTSSGLSEYTQIGNANVTRLGQVERLYGIDIIVTNELLQANNADRNLVCVKGQAWGLASQRKMEIEFQKNIAGQYFDIVWTHRIGVDIIDPNTYI
Ga0066625_1363951	Ga0066625_13639512	F067819	MESLMVAWGSSQAWWGTACSIVVIANALTMALKDEYAESLPVLGKLWPIMNWLALNVHNNKNK*
Ga0066625_1364587	Ga0066625_13645872	F067819	MEMLMVAWGENQAWWGTACSIVVVANAITMALKDEYAEKLPVLGKLWPIMNWLALNVHNN
Ga0066625_1367655	Ga0066625_13676551	F092698	SIIVCCRFRKNINFAVSLETKRSTLVSEASPTSAITAVRNKYV*
Ga0066625_1368663	Ga0066625_13686631	F016399	IRRVARRGSKGIGSSLKTGIIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLGQLGGIFGGATTPQQEFGV*
Ga0066625_1368899	Ga0066625_13688991	F000351	LNGMAEKGKKEKHEEQVQFAAYKQFCDDTTTEKQRAIKEATAQMEQLSASIQKAEADAATLAKEIAGLDEDISVWEGDKKAATEVRELENADYLTTHKDYSESVDALERAVAVLKKQAYDRTQGEALTQVTQLSLIPEHAKKVISAFLAQGDELGEQGDELSVSAPEANAYEFQS
Ga0066625_1376208	Ga0066625_13762081	F000059	QKSSDFESRQQLRTEELEAIAKAIEIMSSGDVSGNADKHLPGLMQVKKSVSFMQVSASATSPTQARVAEFLRQKGSAINSRVLSALAVRVAEDPFVKVKKMIKDLIVRLMEEANEEAEHKGWCDTELSTNEQTRKEKTSAVETLHGDRRVDCLDRQGHPGDQRPHGGDR
Ga0066625_1379869	Ga0066625_13798692	F065210	MEITKSQFKSYDGIHELVITHSPHIRSIDIAQHIIDTQNEVVMLKNIIEDLRQREKKKEDIIDNTR*
Ga0066625_1382867	Ga0066625_13828673	F098044	AILGVNTTYETVLTVEGIILSNPMMSELQDIGKLDKTSLLKMSLMEFLRTPVSSRKLKRLFVAAKDDDKFRAVLQGGQLE*
Ga0066625_1383854	Ga0066625_13838541	F006551	NATVDRDSSSTFDSTVESASGTIGTNGVLTDDTLRSFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPTKDAPSDSGDASEVGRLFALDTSDAEGYGYPRLGIQIAIPTEYYEATRRTPAYPFVNNAFVEKGVFRTMG
Ga0066625_1386640	Ga0066625_13866401	F016399	FTRSARRGSKSIGSSLKTGVIGEVVKGIGAGSLVNVVMSRVAPGSSITPIASTGAAFLAGGVVGGAANLVLSGGLSQLGGIFGGGATAPQQEFGV*
Ga0066625_1388491	Ga0066625_13884911	F005848	MGIPVQRTYLGTPAALNAPVFMVDQQTLQNNFLTLTPNVLQDVVNNPDPAAGLLYQFTLVKNGNATAVRAFSSAISPTTAGRVPIGPVNMSSGSYQWQMTQTLGVATATTILVRYGSPLN
Ga0066625_1389696	Ga0066625_13896961	F016399	RSYSRGSKGIGKSFKTGIIGDVVKGIGAGSLVGIVMSRVAPNSSITPLASAGAGFLTGGLIGGAANLILSGGLSNLGGIFGGGASAPVQEMSV*
Ga0066625_1389696	Ga0066625_13896962	F005848	MGIPVQRTYLGTPAALNAPVFMVDQQTLQNNFLTLTPNVLQDVVNNPDPAAGLLYQFTLVKNGNATAVRAFSSAISPTTAGRVPIGPVNMSSGSYQWQMTQT
Ga0066625_1390526	Ga0066625_13905261	F016619	TIAQNADHKSLTGKTLSIQAELTSKLKSTIVDVTYGASDNYATNGNTVDLSLGSRISTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAFGHTPTSSTATVVALEELDSADTAVNSMTIRIRVIGF*
Ga0066625_1391534	Ga0066625_13915342	F099319	MAGSKPKHNRASILALPEMAHIKEALMLGAEQAQANGGKFDLFKPIRETPMSVIFDRHSQNGFEDGKLNPNLDKVWYSQYGIRIGDMASTNPYIGGKQLHETVSVPNTLSALKIADEILEGAEPWSDWKQYFRLVDMDTPKVNVPITKYTDTVGGAIGAQKGIEIYTESGGTPPAIGGKVETVELDTSGTNNSYRGTISVNRNDVKDNNFLSVEQSLKNAGNEFYYMIGEKLIRTLTADSAVPTDTKANLDLATPVQAEFEALINVIRGKFPGEQRNRADTMFIHPTDAMESIRNAGTNGEYPFLSRFIVGPTDNTDVVNNSGLAAALGLRNVWETPQIEQGTVLIVKRDIAQVVGLREDLTIENFDLSVGGLYESDLLVRFQAKPAHSDVG
Ga0066625_1395280	Ga0066625_13952801	F046004	MKKLIIGVALATCISSVAMAEEKKVSSALPKIDMSFVTDTEHNVTQETTSTEFGVVAGIKGFDLSVKPSFSWDDSEISNVEFWGGYTFDVNESFGITPYGEVNFNNDFETADKIVGVKTEYKF*
Ga0066625_1396891	Ga0066625_13968911	F081198	IETDGEVEVGKAEANTEVAPVVEAPAPATAAPETTSEKVAERIEKSNADTLKAVIETVSDAWKPKSEVAESTSDAGHVEEAFTDDQATEFMDKLFESGYNKLVLEKEGWIQTHTSQKQSGNGEVQEAVSTSGTIPGVKTASNISIQLGAKTAIPIRQYGQFQAVPVGQNTARFYRITVPDAGAITESPTTDITASTHTLTSIDVTCSIRGWRQTVEKAELEDYPASFLNAIRETARLESIRDEHKLILQDLASTARDFGGVTTAPYHIGGSDGAATSNPTEEDADAELDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFEALISSTSLSEYTQIGNASVTRLGQMERLYGIDIIVTNELLSANNASRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYWDIVWTHRIGVNVIDANTYVIVSTVNA*
Ga0066625_1398402	Ga0066625_13984021	F061505	ATEQRKEEHADFVTYQSQSNSAVQLMEKAKNRMVKFYRPNLYKEAPKRELTDEEKILASSGRSDLIATDAPQMIAGTTQAVFVQLAAVPAPPPETWGAYEKKEGKSNGVLALMDMLLKELKDEVTEATHEEETAQKDYEKLMADSQASRADKADSITSKEAAKADLD
Ga0066625_1398553	Ga0066625_13985532	F030135	REELATLSSFTDIWHSTVVGCQFPDAILPGWEAFDLVAGPLS*
Ga0066625_1398727	Ga0066625_13987271	F012639	MSANNSGIVLTCSAAFAAAAPVATVISATMQTSPTVTAVTELQVPLTENWIATDVYILAAAGAGTPTVINPVVSMDKNRGRQLVQTPPLSSMLITNNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAIS
Ga0066625_1398883	Ga0066625_13988831	F021393	EINSETQVDTVEKSANTLVETEKSFQQTVKSGIDTLTEVVQSIAESQLASTEAIQGLATRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPASDKGGLKMQQKSQYTFTTETPRPNAALETVEKSQVDSSQILQDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY*
Ga0066625_1400471	Ga0066625_14004711	F005848	MGIPVQRTYLGTPAALNAPVFMVDQQTLQNNFLTLTNNVLQDVVNNPDPAAGLLYQFTLVKNGNATAVRAFSSAISPTTAGRVPIGPVNMSSGSYQWQMTQTLGAVT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004975: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_100m_RNA (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences