NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093887

Metagenome / Metatranscriptome Family F093887

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093887
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 47 residues
Representative Sequence RYEMIQLQLDEHNRRFDKLEKMMQGGFASIAVIITVAIAILEFAR
Number of Associated Samples 82
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 9.43 %
% of genes near scaffold ends (potentially truncated) 82.08 %
% of genes from short scaffolds (< 2000 bps) 77.36 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (63.208 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(46.226 % of family members)
Environment Ontology (ENVO) Unclassified
(70.755 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(79.245 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 93.33%    β-sheet: 0.00%    Coil/Unstructured: 6.67%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF11351GTA_holin_3TM 32.08
PF01391Collagen 1.89
PF13884Peptidase_S74 1.89
PF13481AAA_25 0.94
PF08401ArdcN 0.94
PF02178AT_hook 0.94
PF00476DNA_pol_A 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 0.94
COG4227Antirestriction protein ArdCReplication, recombination and repair [L] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A63.21 %
All OrganismsrootAll Organisms36.79 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10000903Not Available18603Open in IMG/M
3300000116|DelMOSpr2010_c10048457All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1873Open in IMG/M
3300000947|BBAY92_10033400Not Available1405Open in IMG/M
3300004097|Ga0055584_101365150Not Available737Open in IMG/M
3300005512|Ga0074648_1143863Not Available737Open in IMG/M
3300005942|Ga0070742_10038508All Organisms → Viruses → Predicted Viral1291Open in IMG/M
3300006025|Ga0075474_10097865All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae949Open in IMG/M
3300006026|Ga0075478_10050080All Organisms → Viruses → Predicted Viral1370Open in IMG/M
3300006467|Ga0099972_10351691Not Available652Open in IMG/M
3300006752|Ga0098048_1003118Not Available6817Open in IMG/M
3300006752|Ga0098048_1003229All Organisms → Viruses6672Open in IMG/M
3300006789|Ga0098054_1159717All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium TMED111830Open in IMG/M
3300006803|Ga0075467_10702378Not Available515Open in IMG/M
3300006867|Ga0075476_10210223All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes705Open in IMG/M
3300006867|Ga0075476_10234382Not Available659Open in IMG/M
3300006868|Ga0075481_10010227Not Available3775Open in IMG/M
3300006870|Ga0075479_10131765All Organisms → Viruses → Predicted Viral1026Open in IMG/M
3300006916|Ga0070750_10067605All Organisms → Viruses → Predicted Viral1699Open in IMG/M
3300006916|Ga0070750_10425300Not Available552Open in IMG/M
3300006919|Ga0070746_10024709All Organisms → Viruses → Predicted Viral3274Open in IMG/M
3300006919|Ga0070746_10351500Not Available668Open in IMG/M
3300007229|Ga0075468_10116422All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae833Open in IMG/M
3300007231|Ga0075469_10056655All Organisms → Viruses → Predicted Viral1163Open in IMG/M
3300007276|Ga0070747_1169540All Organisms → Viruses779Open in IMG/M
3300007276|Ga0070747_1211792Not Available680Open in IMG/M
3300007344|Ga0070745_1051504All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1693Open in IMG/M
3300007344|Ga0070745_1223443Not Available689Open in IMG/M
3300007539|Ga0099849_1014958All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium3417Open in IMG/M
3300007539|Ga0099849_1029967Not Available2331Open in IMG/M
3300007540|Ga0099847_1114707All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)814Open in IMG/M
3300007992|Ga0105748_10335434Not Available646Open in IMG/M
3300008012|Ga0075480_10436929Not Available639Open in IMG/M
3300009079|Ga0102814_10203613All Organisms → Viruses → Predicted Viral1079Open in IMG/M
3300009124|Ga0118687_10028385All Organisms → Viruses → Predicted Viral1838Open in IMG/M
3300009515|Ga0129286_10201581All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300009757|Ga0123367_1072205Not Available675Open in IMG/M
3300010392|Ga0118731_101091439Not Available679Open in IMG/M
3300010430|Ga0118733_105627226Not Available659Open in IMG/M
3300011252|Ga0151674_1007272Not Available1819Open in IMG/M
3300011254|Ga0151675_1010926All Organisms → Viruses → Predicted Viral1892Open in IMG/M
3300017697|Ga0180120_10118487All Organisms → Viruses → Predicted Viral1141Open in IMG/M
3300017713|Ga0181391_1147507Not Available521Open in IMG/M
3300017725|Ga0181398_1168541Not Available517Open in IMG/M
3300017727|Ga0181401_1049214Not Available1158Open in IMG/M
3300017742|Ga0181399_1005695All Organisms → Viruses → Predicted Viral3847Open in IMG/M
3300017762|Ga0181422_1160895Not Available686Open in IMG/M
3300017767|Ga0181406_1054953All Organisms → Viruses → Predicted Viral1228Open in IMG/M
3300017768|Ga0187220_1247654Not Available533Open in IMG/M
3300017770|Ga0187217_1177750Not Available707Open in IMG/M
3300017783|Ga0181379_1028997All Organisms → Viruses → Predicted Viral2204Open in IMG/M
3300017783|Ga0181379_1118100Not Available961Open in IMG/M
3300017957|Ga0181571_10377081Not Available882Open in IMG/M
3300018049|Ga0181572_10192756Not Available1324Open in IMG/M
3300019711|Ga0193993_1026232Not Available676Open in IMG/M
3300019721|Ga0194011_1026141Not Available656Open in IMG/M
3300019730|Ga0194001_1071532Not Available503Open in IMG/M
3300019757|Ga0193964_1087442Not Available662Open in IMG/M
3300020187|Ga0206130_10001505Not Available33885Open in IMG/M
3300021958|Ga0222718_10025074Not Available4069Open in IMG/M
3300021958|Ga0222718_10038364All Organisms → Viruses → Predicted Viral3136Open in IMG/M
3300021960|Ga0222715_10701247Not Available510Open in IMG/M
3300021964|Ga0222719_10569601Not Available665Open in IMG/M
3300022057|Ga0212025_1031770All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes891Open in IMG/M
3300022065|Ga0212024_1044205Not Available776Open in IMG/M
3300022072|Ga0196889_1081039Not Available605Open in IMG/M
3300022158|Ga0196897_1000207All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium7321Open in IMG/M
3300022178|Ga0196887_1080381All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Vibrio phage Vp_R1763Open in IMG/M
3300022187|Ga0196899_1099832All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes861Open in IMG/M
3300022187|Ga0196899_1151076Not Available645Open in IMG/M
3300023108|Ga0255784_10088197All Organisms → Viruses → Predicted Viral1786Open in IMG/M
3300024242|Ga0228673_1042862Not Available801Open in IMG/M
(restricted) 3300024518|Ga0255048_10004834Not Available7702Open in IMG/M
3300025070|Ga0208667_1002055Not Available6813Open in IMG/M
3300025070|Ga0208667_1018931Not Available1369Open in IMG/M
3300025070|Ga0208667_1030925Not Available958Open in IMG/M
3300025083|Ga0208791_1069521Not Available584Open in IMG/M
3300025084|Ga0208298_1076080Not Available628Open in IMG/M
3300025098|Ga0208434_1114168Not Available515Open in IMG/M
3300025653|Ga0208428_1015849All Organisms → Viruses → Predicted Viral2541Open in IMG/M
3300025653|Ga0208428_1044891All Organisms → Viruses → Predicted Viral1359Open in IMG/M
3300025653|Ga0208428_1102015All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Vibrio phage Vp_R1807Open in IMG/M
3300025671|Ga0208898_1000769Not Available23359Open in IMG/M
3300025759|Ga0208899_1024051All Organisms → Viruses → Predicted Viral2980Open in IMG/M
3300025759|Ga0208899_1053145All Organisms → Viruses → Predicted Viral1723Open in IMG/M
3300025806|Ga0208545_1126946Not Available634Open in IMG/M
3300025815|Ga0208785_1019078All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2278Open in IMG/M
3300025818|Ga0208542_1056126Not Available1212Open in IMG/M
3300025828|Ga0208547_1193632Not Available552Open in IMG/M
3300025853|Ga0208645_1202686Not Available701Open in IMG/M
3300025853|Ga0208645_1293793Not Available514Open in IMG/M
3300025853|Ga0208645_1294441All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Vibrio phage Vp_R1513Open in IMG/M
3300026449|Ga0247593_1090388Not Available599Open in IMG/M
3300026500|Ga0247592_1132057Not Available597Open in IMG/M
3300026503|Ga0247605_1056945Not Available972Open in IMG/M
3300026503|Ga0247605_1175313Not Available512Open in IMG/M
(restricted) 3300028045|Ga0233414_10170153Not Available970Open in IMG/M
3300028599|Ga0265309_10000050Not Available33904Open in IMG/M
3300032277|Ga0316202_10476873Not Available585Open in IMG/M
3300034374|Ga0348335_002184All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium13686Open in IMG/M
3300034374|Ga0348335_066439Not Available1288Open in IMG/M
3300034374|Ga0348335_107299Not Available861Open in IMG/M
3300034374|Ga0348335_154848Not Available621Open in IMG/M
3300034375|Ga0348336_003221Not Available12592Open in IMG/M
3300034418|Ga0348337_017220All Organisms → Viruses → Predicted Viral3800Open in IMG/M
3300034418|Ga0348337_030481Not Available2488Open in IMG/M
3300034418|Ga0348337_140903Not Available700Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous46.23%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine9.43%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater9.43%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater4.72%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.77%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment2.83%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.83%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.89%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.89%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.89%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat0.94%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.94%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.94%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.94%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.94%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.94%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.94%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.94%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.94%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment0.94%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.94%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005942Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006467Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007231Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300009515Microbial community of beach aquifer sediment core from Cape Shores, Lewes, Delaware, USA - CF-2EnvironmentalOpen in IMG/M
3300009757Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_205_2m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011252Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeateEnvironmentalOpen in IMG/M
3300011254Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017957Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018049Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019711Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_4-5_MGEnvironmentalOpen in IMG/M
3300019721Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_7-8_MGEnvironmentalOpen in IMG/M
3300019730Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_7-8_MGEnvironmentalOpen in IMG/M
3300019757Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_7_MGEnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022158Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300023108Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaGEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025815Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300026449Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 56R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026500Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 54R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026503Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 91R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300028599Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1000090313300000116MarineRLEAHERECSIRYEMIQMQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR*
DelMOSpr2010_1004845733300000116MarineMSDLEQAISRLEAHERECSIRYDMIQMQLDEHNKRFDRLEALMTRGFGMVAVMITMAIGILEFAR*
BBAY92_1003340013300000947Macroalgal SurfaceAHNQRFDKLEKMMTGGFASIALIVTMAIAILEFAR*
Ga0055584_10136515013300004097Pelagic MarineYEMIQLQLDNHSKRFDRLEALMSRGFFAMGIMITLAIAILEFAR*
Ga0074648_114386313300005512Saline Water And SedimentDKHEAECALRYEMIQLQLDEHNRRFDKLEKMMQGGFASIAIIITVAIAILEFAR*
Ga0070742_1003850833300005942EstuarineECAIRYEMIQLQLDNHSKRFDRLEALMSRGFFAMGIMITLAIAILEFAR*
Ga0075474_1009786513300006025AqueousHERECSIRYEMIQMQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR*
Ga0075478_1005008033300006026AqueousRYQMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTVAIAILEFAR*
Ga0099972_1035169113300006467MarineSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASISIIVTMAIAILEFAR*
Ga0098048_100311813300006752MarineMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR*
Ga0098048_100322933300006752MarineMSDLEQAISRLEAHERECSVRYEMIQMQLDEHNKRFDRLEALMSRGFFAMGVMITLAITILEFAR*
Ga0098054_115971723300006789MarineMIQMQLDAHNQRFDKLEKMMTGGFASISIIVTMAIAILEFAR*
Ga0075467_1070237823300006803AqueousQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR*
Ga0075476_1021022313300006867AqueousHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR*
Ga0075476_1023438233300006867AqueousYQMIQLQLDEHNKRFDRLEKMMTGGFASLAVIITMAIAILEFAR*
Ga0075481_1001022713300006868AqueousEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR*
Ga0075479_1013176533300006870AqueousSRLEAHERECSIRYEMIQMQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR*
Ga0070750_1006760543300006916AqueousMSNLEQAISRLETHERECSIRYEMIQMQLDEHNKRFDRIETLMLRGFGTMAVMITLAIAVLEFAR*
Ga0070750_1042530013300006916AqueousMQLDEHNKRFDKLEKMMTGGFAAIGIMITLAITILEFAR*
Ga0070746_1002470933300006919AqueousECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR*
Ga0070746_1035150023300006919AqueousVTDIDQTLSRLEAHERECTVRYQMIQMQLDEHNKRFDRLEKMMTGGFATIGVMITLAIAILEFAR*
Ga0075468_1011642223300007229AqueousMIQLQLDEHNKRFDRLEKMMQGGFASISVIIVVAIGILEFAR*
Ga0075469_1005665543300007231AqueousMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR*
Ga0070747_116954023300007276AqueousMIQLQLDEHNKRFDRLEKMMQGGFASISVIITLAIAILEFAR*
Ga0070747_121179213300007276AqueousHEAECALRYQMIQLQLDEHNKRFDRLEKMMQGGFASISVIIVVAIGILEFAR*
Ga0070745_105150433300007344AqueousERECSIRYEMIQMQLDEHNKRFDRLEALMARGFGMVAVMITLAIAILEFAR*
Ga0070745_122344333300007344AqueousKHEAECALRYQMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAIGILEFAR*
Ga0099849_101495843300007539AqueousMSDLEQAIIRLEAHERECSIRYEMIQMQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR*
Ga0099849_102996713300007539AqueousRYEMIQMQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR*
Ga0099847_111470713300007540AqueousMIQLQLDEHNKRFDRLEKMMQGGFASISVIIVVAI
Ga0105748_1033543413300007992Estuary WaterRYQMIQLQLDEHNKRFDRLEKMMTGGFASISVIITLAVAILEFAR*
Ga0075480_1043692913300008012AqueousKHEAECALRYEMIQLQLDEHNRRFDKLEKLMQGGFASIAVIITVAIAILEFAR*
Ga0102814_1020361313300009079EstuarineIRYEMIQLQLDNHSKRFDRLEALMSRGFFAMGIMITLAIAILEFAR*
Ga0118687_1002838533300009124SedimentMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTVAIAILEFAR*
Ga0129286_1020158113300009515SedimentMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR*
Ga0123367_107220533300009757MarineAECALRYQMIQLQLDEHNKRFDKLEKMMTGGFASIAVIVTMAIAILEFAR*
Ga0118731_10109143933300010392MarineYQMIQMQLDEHNKRFDRLEKMMTGGFATIGVMITLAIAILEFAR*
Ga0118733_10562722633300010430Marine SedimentQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR*
Ga0151674_100727213300011252MarineYQMIQLQLDEHNKRFDRLEKMMTGGFASISVIITMAVAILEFAR*
Ga0151675_101092633300011254MarineDAHNQRFDKLEKMMTGGFASIAVIVTMAIAILEFAR*
Ga0180120_1011848713300017697Freshwater To Marine Saline GradientSRLEAHERECSIRYQMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTVAIAVLEFAR
Ga0181391_114750713300017713SeawaterKHEAECALRYQMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0181398_116854123300017725SeawaterLDKHEAECALRYQMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0181401_104921413300017727SeawaterLQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0181399_100569543300017742SeawaterDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0181422_116089533300017762SeawaterRYEMIQLQLDEHNRRFDKLEKMMQGGFASIAVIITVAIAILEFAR
Ga0181406_105495313300017767SeawaterERECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0187220_124765423300017768SeawaterIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0187217_117775013300017770SeawaterHEAECALRYQMIQLQLDEHNKRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0181379_102899743300017783SeawaterMSDLEQAISRLEAHERDCSIRYEMIQMQLDEHNKRFDRLEALMARGFGMVAVMITLAIAILEFAR
Ga0181379_111810033300017783SeawaterRYEMIQMQLDAHNQRFDKLEKMMTGGFASIALIVTMAIAILEFAR
Ga0181571_1037708133300017957Salt MarshLDEHNRRFDKLEKMMTGGFASIAVIVTMAIAILEFAR
Ga0181572_1019275613300018049Salt MarshQLDEHNRRFDKLEKMMTGGFASIAVIVTMAIAILEFAR
Ga0193993_102623233300019711SedimentRYQMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTVAIAILEFAR
Ga0194011_102614133300019721SedimentMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0194001_107153213300019730SedimentMNSVDEALARLDKHKAECALRYEMIQLQLDEHNKRFDRLEKMMTGGFASLAVIITMAIAILE
Ga0193964_108744213300019757Freshwater Microbial MatRECSIRYQMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0206130_10001505423300020187SeawaterQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0222718_1002507413300021958Estuarine WaterLESHERECSIRYQMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTMAIAILEFAR
Ga0222718_1003836413300021958Estuarine WaterLESHERECSIRYQMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTVAIAILEFAR
Ga0222715_1070124723300021960Estuarine WaterQMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAIGILEFAR
Ga0222719_1056960113300021964Estuarine WaterQMQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR
Ga0212025_103177033300022057AqueousSIRYEMIQMQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR
Ga0212024_104420533300022065AqueousIQMQLDAHNQRFDKLERMMTGGFASIAIIVTMAIAILEFAR
Ga0196889_108103913300022072AqueousQMQLDAHNQRFDKLEKMMTGGFASIAVIVTMAIAILEFAR
Ga0196897_100020713300022158AqueousCSIRYQMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTVAIAILEFAR
Ga0196887_108038113300022178AqueousLRYQMIQLQLDEHNKRFDRLEKMMQGGFASISVIITVAIGILEFAR
Ga0196899_109983213300022187AqueousHEAECALRYQMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAIGILEFAR
Ga0196899_115107613300022187AqueousRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0255784_1008819713300023108Salt MarshRYQMIQLQLDEHNRRFDKLEKMMTGGFASIAVIVTMAIAILEFAR
Ga0228673_104286213300024242SeawaterMSDLEQAISRLEAHERECSIRYEMIQMQLDEHNKRFDRIEALMTRGFGMVAVMITMAIAILEFAR
(restricted) Ga0255048_1000483413300024518SeawaterLRYQMIQLQLDEHNRRFDRLEKMMTGGFASISVIITLAVAILEFAR
Ga0208667_100205553300025070MarineLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0208667_101893123300025070MarineMSDLEQAISRLEAHERECSVRYEMIQMQLDEHNKRFDRLEALMSRGFFAMGVMITLAITILEFAR
Ga0208667_103092513300025070MarineLSRLEAHERECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0208791_106952123300025083MarineSHERECSVRYEMIQMQLDEHNKRFDRLEALMSRGFFAMGVMITLAITILEFAR
Ga0208298_107608033300025084MarineSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0208434_111416823300025098MarineEAHERECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0208428_101584933300025653AqueousQAISRLEAHERECSIRYEMIQMQLDEHSKRFDRLEALMARGFGMVAVMITMAIAILEFAR
Ga0208428_104489133300025653AqueousMQLDAHNQRFDKLEKMMTGGFASIAVIVTVAIAILEFAR
Ga0208428_110201513300025653AqueousQLDEHNRRFDRLEKMMQGGFASISVIIVVAIGILEFAR
Ga0208898_100076913300025671AqueousLDEHSKRFDRLEAIMARGFGMVAVMITMAIAILEFAR
Ga0208899_102405133300025759AqueousHERECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0208899_105314523300025759AqueousMSNLEQAISRLETHERECSIRYEMIQMQLDEHNKRFDRIETLMLRGFGTMAVMITLAIAVLEFAR
Ga0208545_112694633300025806AqueousQLDEHNKRFDRLEKMMQGGFASISVIITVAIGILEFAR
Ga0208785_101907813300025815AqueousDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR
Ga0208542_105612643300025818AqueousFVMSDLEQAISRLEAHERECSIRYEMIQMQLDEHNKRFDRLEAIMARGFGMVAVMITMAIAILEFAR
Ga0208547_119363213300025828AqueousQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR
Ga0208645_120268613300025853AqueousIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0208645_129379313300025853AqueousQMQLDAHNQRFDKLEKMMTGGFASIAIIVTVAIAILEFAR
Ga0208645_129444123300025853AqueousEAECALRYQMIQLQLDEHNRRFDRLEKMMQGGFASISVIITVAIAILEFAR
Ga0247593_109038813300026449SeawaterLDEHNKRFDRLKKMMTGGFASISVIITMAIAILEFAR
Ga0247592_113205733300026500SeawaterRLEAHERECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0247605_105694533300026503SeawaterLEAHERECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0247605_117531323300026503SeawaterLEAHERECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIALIVTMAIAILEFAR
(restricted) Ga0233414_1017015313300028045SeawaterIQLQLDEHNKRFDRLEKMMTGGFASISVIITMAVAILEFAR
Ga0265309_10000050423300028599SedimentRYQMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0316202_1047687313300032277Microbial MatLDEHNKRFDRLEKMMQGGFASISVIIVVAVAILEFAR
Ga0348335_002184_2_1603300034374AqueousHERECSIRYEMIQMQLDEHSKRFDRLEALMARGFGMVAVMITMAIAILEFAR
Ga0348335_066439_1154_12823300034374AqueousMIQMQLDEHNKRFDRLEALMARGFGMVAVMITMAIAILEFAR
Ga0348335_107299_733_8613300034374AqueousMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAIGILEFAR
Ga0348335_154848_289_4173300034374AqueousMIQLQLDEHNRRFDRLEKMMQGGFASISVIITVAIAILEFAR
Ga0348336_003221_3_1703300034375AqueousLEAHERECSIRYEMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTMAIAILEFAR
Ga0348337_017220_3540_36683300034418AqueousMIQMQLDAHNQRFDKLEKMMTGGFASIAVIVTMAIAILEFAR
Ga0348337_030481_2321_24883300034418AqueousLEAHERECSIRYEMIQMQLDEHSKRFDRLEAIMARGFGMVAVMITMAIAILEFAR
Ga0348337_140903_523_6513300034418AqueousMIQLQLDEHNRRFDRLEKMMQGGFASISVIIVVAVAILEFAR


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