NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019757

3300019757: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_7_MG



Overview

Basic Information
IMG/M Taxon OID3300019757 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0217630 | Ga0193964
Sample NameMicrobial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_7_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size265276601
Sequencing Scaffolds43
Novel Protein Genes51
Associated Families49

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Uronematidae → Uronema → Uronema marinum1
All Organisms → Viruses → Predicted Viral5
Not Available21
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica1
unclassified Hyphomonas → Hyphomonas sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.1
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomerivermicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F001139Metagenome / Metatranscriptome767Y
F001277Metagenome / Metatranscriptome733Y
F002318Metagenome / Metatranscriptome571Y
F003637Metagenome / Metatranscriptome476Y
F004343Metagenome / Metatranscriptome442Y
F006241Metagenome378Y
F006306Metagenome / Metatranscriptome376Y
F006536Metagenome371Y
F008361Metagenome / Metatranscriptome334Y
F010536Metagenome / Metatranscriptome302N
F015277Metagenome / Metatranscriptome256Y
F015416Metagenome / Metatranscriptome255Y
F016507Metagenome / Metatranscriptome246N
F016813Metagenome / Metatranscriptome244Y
F020880Metagenome221Y
F020921Metagenome / Metatranscriptome221Y
F021441Metagenome / Metatranscriptome219Y
F024564Metagenome / Metatranscriptome205N
F026012Metagenome / Metatranscriptome199Y
F036294Metagenome / Metatranscriptome170Y
F040603Metagenome / Metatranscriptome161N
F040644Metagenome / Metatranscriptome161Y
F046341Metagenome151N
F049008Metagenome / Metatranscriptome147Y
F051181Metagenome / Metatranscriptome144N
F051950Metagenome / Metatranscriptome143Y
F052541Metagenome / Metatranscriptome142Y
F057758Metagenome / Metatranscriptome136N
F062681Metagenome130N
F062788Metagenome / Metatranscriptome130Y
F068127Metagenome / Metatranscriptome125Y
F073262Metagenome120Y
F074892Metagenome / Metatranscriptome119Y
F078736Metagenome / Metatranscriptome116Y
F083386Metagenome113Y
F084398Metagenome / Metatranscriptome112N
F087210Metagenome / Metatranscriptome110Y
F088815Metagenome109N
F089560Metagenome109N
F090406Metagenome108N
F090422Metagenome / Metatranscriptome108N
F093842Metagenome / Metatranscriptome106N
F093887Metagenome / Metatranscriptome106N
F094948Metagenome / Metatranscriptome105Y
F099388Metagenome / Metatranscriptome103N
F100031Metagenome / Metatranscriptome103N
F100980Metagenome102Y
F105370Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193964_1004771All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Uronematidae → Uronema → Uronema marinum4820Open in IMG/M
Ga0193964_1010159All Organisms → Viruses → Predicted Viral2902Open in IMG/M
Ga0193964_1010178All Organisms → Viruses → Predicted Viral2898Open in IMG/M
Ga0193964_1026649Not Available1472Open in IMG/M
Ga0193964_1030089Not Available1349Open in IMG/M
Ga0193964_1032282All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1284Open in IMG/M
Ga0193964_1034986All Organisms → Viruses → Predicted Viral1213Open in IMG/M
Ga0193964_1036780All Organisms → cellular organisms → Bacteria1171Open in IMG/M
Ga0193964_1043172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales1048Open in IMG/M
Ga0193964_1043279All Organisms → Viruses → Predicted Viral1046Open in IMG/M
Ga0193964_1044670All Organisms → Viruses → Predicted Viral1024Open in IMG/M
Ga0193964_1045103Not Available1017Open in IMG/M
Ga0193964_1045322All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1014Open in IMG/M
Ga0193964_1048654All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea966Open in IMG/M
Ga0193964_1048802Not Available964Open in IMG/M
Ga0193964_1051097All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.935Open in IMG/M
Ga0193964_1055401All Organisms → cellular organisms → Bacteria885Open in IMG/M
Ga0193964_1059889Not Available841Open in IMG/M
Ga0193964_1060314All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.837Open in IMG/M
Ga0193964_1069535Not Available764Open in IMG/M
Ga0193964_1071866All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium748Open in IMG/M
Ga0193964_1073233All Organisms → cellular organisms → Bacteria739Open in IMG/M
Ga0193964_1073708Not Available737Open in IMG/M
Ga0193964_1075379Not Available726Open in IMG/M
Ga0193964_1081187Not Available693Open in IMG/M
Ga0193964_1081569All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.691Open in IMG/M
Ga0193964_1081924Not Available689Open in IMG/M
Ga0193964_1087442Not Available662Open in IMG/M
Ga0193964_1089081Not Available654Open in IMG/M
Ga0193964_1090275All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica649Open in IMG/M
Ga0193964_1090457Not Available648Open in IMG/M
Ga0193964_1092812Not Available638Open in IMG/M
Ga0193964_1095295unclassified Hyphomonas → Hyphomonas sp.628Open in IMG/M
Ga0193964_1096224Not Available625Open in IMG/M
Ga0193964_1104593All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.594Open in IMG/M
Ga0193964_1104888Not Available593Open in IMG/M
Ga0193964_1110497All Organisms → cellular organisms → Eukaryota → Sar576Open in IMG/M
Ga0193964_1127235All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium531Open in IMG/M
Ga0193964_1129497Not Available526Open in IMG/M
Ga0193964_1134265Not Available515Open in IMG/M
Ga0193964_1137088Not Available509Open in IMG/M
Ga0193964_1137166Not Available509Open in IMG/M
Ga0193964_1138857Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193964_1004771Ga0193964_10047711F051950MWGYISTEATYQLNFNVGFSTTRSDVLVHLSQXQYXXXFXFAFLXSFYYLFVTRIVRYRSLKMRPKIVTSFRPHGKXGDFLAATIPAIXCLNILSNSNFILRLLEXQNEASLFTVRVRARQXYXVYKFELKNFTDILTAPKNVGYNRXTVNTFGDLQVAEDYLYMLQLRSQNVXVKNYXSEVLQKAGEVKKNHIVAPQEQLSLEVNTQSKTNFINNKINS
Ga0193964_1010159Ga0193964_10101591F010536MIDTMLSKATEGMLIAELLNRKNEKGVPFFMGKSILLTNGQQQLLAILPNIQI
Ga0193964_1010159Ga0193964_10101596F051181DLLEQAQENISENVDKQEKEKLYLVLQESLNELSGLEELNKTYKELRDKAIKDLYNVGISAQSLATTTELTRQMIHRIVK
Ga0193964_1010178Ga0193964_10101783F040603MMYYTKHKTLADTSETSLFTVPTGYVLWVNYIFIANHGNSTNNVSCWWEDGAGVDQLYFMDNNSLQSGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLMNEPAAFPNFNG
Ga0193964_1016862Ga0193964_10168623F000200MIKVYDFRCDNGHVYEQFVDSGTKVSRCKCGASATKMLSAPAFILDGHTGDFPGRHMKWVKEHEQAGRSNSSP
Ga0193964_1026649Ga0193964_10266495F020880MIDKWIYNFFAALDKLCLMMDNLFKFMIGLKMNYYFTGALIIAFVLIALFLQPGYIPR
Ga0193964_1030089Ga0193964_10300892F049008MSKNLEITQLTRECDDLAARFWQLEASGRGRGYLEWLQKVRQVSEIIEENRPKTFYFFRNELESANSNASRRSARKKVEKSREK
Ga0193964_1032282Ga0193964_10322822F090406MKFERNVLWWIIVLVGLTSCSTTLTSVDGKGGNVYALAPTVVDQILKDAMSAEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD
Ga0193964_1034986Ga0193964_10349862F024564MDSSIITLITIGYVLGIAICGVLAYLGIKGTNEAIDYQNSRLRQHDEWRKK
Ga0193964_1036780Ga0193964_10367802F090422MSRLGEVARVKRTLKLFDMILNKHIDSINPEDNSLPIDGLHWLISMQADCEDLIEYLSDYDSYDPG
Ga0193964_1043172Ga0193964_10431721F026012LAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALHSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQHLEPSEYITIKLAYGSNVSQEKK
Ga0193964_1043279Ga0193964_10432792F040644YVALTGSDDNRIVAPLKAVSQYTSISGDETSVQFRGVSIELIDVPTSVTATGKVVQFSGISSGVNVHCTFKKKFGEVSDETATLADIGLETEYEPIIMAGVAAQMIAGKDIPSATTEYISDAIQANVYQVGSSTNIRNSLLQYQQVLIQQARKDLRARYPEPVSLNSVVYPSA
Ga0193964_1044670Ga0193964_10446701F016507MTSKGMHTKTRNRLARQDALREYMQERGSVQYLFDIIEKIEKLDPESETFQQDLAKYSKVVDVRHKMLGKYLPELKATEITGEGGGDLQITVADFKSA
Ga0193964_1045103Ga0193964_10451031F006306LSTNWSLYYRNYYEPKFKRLIKRNEELYDENQKMKRRLEKYEGSKRMVLYYNKKEKND
Ga0193964_1045322Ga0193964_10453222F036294MDRGFSDEAIVGVKPAADEDAVTYQRVKLLESDKDVGAEGRNMELAYGISE
Ga0193964_1048654Ga0193964_10486541F051950MWGYISTEAIYQLNFNVGFSTTRSDVLVHLAQXQYXXXFXFAFLXSFYYLVTTRIVRYRSLKMRPKIVTSFRPHGKWGDFLAAIVPAIXCLNILTNSNFILRLMEXQNEASLFTVRVRARQXYWVYKFELKNFTDILTAPKNIGYNRXCVNTFGDLQVAEDYLYVLQLRSQNKXVKAYXGKILTESVSGGKKMHLVSPHEQLRLD
Ga0193964_1048802Ga0193964_10488021F001139NNDLTHYFLRPHNQLPQGYLDHCRKFFKELSVKQQASSSKRQAVPLWKPGLRVKNRSNRK
Ga0193964_1051097Ga0193964_10510972F015277MTKFLNIPVTNEQYQLVAISDIVLIEQASTTTVTITYGGGKVTTITHATAAAGDEKERDTIEGAVVAALATSWTNPAYNVDNLPYAVSG
Ga0193964_1055401Ga0193964_10554011F083386MAISRMQQPRQNYGLGSFVKKVTGKVTKPFTKVAKKIVPKEIAGIMRVAAPFLPPGYREAAYLL
Ga0193964_1055401Ga0193964_10554014F006536GDGFNFEYQLGQTIAGVSDTLTLCAKGASNNDGVIGSIKWYDTTNG
Ga0193964_1057203Ga0193964_10572032F099388ANTQLVNNLPLSETVKNQFDNVVRNRAKNLATPGGVIDAVDVWEMGVLGLMIAAIAYKEYDEIPTIFKRTATNMFNSMTSMYNIPPVPLEQYDLDYEFIEKVITTGEKVMPTDIIIKKVGEIAKGVGEKGLATGFGYVPTTPKNTDTMETTQKIQPGVQEEKMFEQARPKKIKSAGGSGARIL
Ga0193964_1059889Ga0193964_10598891F046341MFETETYRIPHFAIVPLLYDDYNGVQGDDEAFIDNLHQWLDDQHGAGQWHIGDVSEPYHGRADFERI
Ga0193964_1060314Ga0193964_10603142F020921MATPAVPTTNVGIYNHLREATDCNQTTNLSLASLCNGGTYNDITNTFNAAGGRAMFFDVIGGTNNPITTTPNSVNLFDDIIGTAPFNLANTIGGRYT
Ga0193964_1060314Ga0193964_10603143F003637MAKVIAEKVQEQVQVDSPKMVEIKHTRTMQDASGKDVEVVDYVETKQVDQAISQCEAHKANLQSQLTECETELADYIAIRDAE
Ga0193964_1069535Ga0193964_10695351F052541MVKLVLSNEKMVTLKRGNKTITRSELDYETNKVMYDFRGFKVASDDVKENIKEVD
Ga0193964_1071866Ga0193964_10718661F100980VLFRLCLAFFLLIPSPVFAEEVPGEVTVNEGFEDSTYETGLTVSTGVIYCDEQDRYGTTGCSLGIGSSTLFVFSEDVYEVGFIVGAVNNSYTVKYYYSDNTDETIQKSGQDNSEGPPWANMYDSFYKSFTDYNNDEANTDKFITKFEVNVSDPTVVDTLYWQYVD
Ga0193964_1073233Ga0193964_10732331F068127TALYSNWKKNNNSDDKIEKLFEQQQQSIKTNGGQNAKQW
Ga0193964_1073708Ga0193964_10737081F105370NKVNIEFLKDQVEKLQRDVEKLKDKQRDFANGNNH
Ga0193964_1075379Ga0193964_10753791F008361LNEATKELEKATLAVENAETSKARLDASIDLKKAVARLEGLNYLS
Ga0193964_1075527Ga0193964_10755271F100031MIITQKMYDDYLDNMNDADWKDIRTKIEERYPETITWPEKMFRMYCSAVVRSGFRKEGLN
Ga0193964_1081187Ga0193964_10811871F021441MKKIKHNDLLPWFIQDHGTLPASYLKSCREFFGSIKLQASSIKPQASIQKNLHKPGTRVKNRFNRKR
Ga0193964_1081569Ga0193964_10815691F089560TLEERMDNTLTSYYFQKHEKNKDIEDYRQLDYASGRRVVTNISKDNKTKTTQNKPMRRHLFISSFGRYFRND
Ga0193964_1081924Ga0193964_10819242F093842MKLTILNFTTGHIHIHNVSSQSEVKKYVDNQSPHKTWMLSNDKEFKIINH
Ga0193964_1087442Ga0193964_10874421F093887RECSIRYQMIQMQLDAHNQRFDKLEKMMTGGFASIAIIVTMAIAILEFAR
Ga0193964_1089081Ga0193964_10890811F057758YYRTNKATQQGAEIIPFKKDQGILSVKSGAEAEGMLKDFLQKSDQISGANVKPIKQGQTTKLDTLPMRLLKNFNTEFRLEDLTNEGYSKEQANVLIKAKNKITSGEEINPNEALLRVKEEMADEAGVDVDELDFDFQIEEPEPIDEFAKGGIVGLYI
Ga0193964_1090275Ga0193964_10902752F088815MKHRLTRVEVLDLFMLLLEFRETEPGLSKDDVGSLVAALDVLNTAQRERMLAEEDRIG
Ga0193964_1090457Ga0193964_10904571F073262SGALETADHPTGHLIGAARLHANNCLEGLRAPVGIATQPLALQSATNTMGANLNASLNMPKALATLQDKCPMLVASLLAVCEVATAAALPMHWSKVHATLKPAEWAAHHARALDTAGNKIDKLAPLISPPMASDLGNGRFAASSTNNPNEGMSVFHIRPSCMPSCQEHQDRNRMLEVLVQGVGAASFEVQQMALINNDLELPQSTEEFRGHINGY
Ga0193964_1092812Ga0193964_10928123F062788TDTSASTTYQVAYASITGPTTCNMAKGPLILEENDILLLQTTDTSSLSATVSILEYDRT
Ga0193964_1095295Ga0193964_10952951F078736MTDELKEWYLMPSIKECLAEYQKQDIGLIADIAKHGCAGGV
Ga0193964_1096224Ga0193964_10962241F074892MTAMMQKYALIALLGLLLSACSERGENVYRTWVGPDRSSMAIVTLRLGEDVRDITIRERVLPRSEYGAILLVPGAYTLYEHDGANIGISISPMLINVEKARANGELILGHTYVLRAGKSKETGERALWIEDAR
Ga0193964_1100636Ga0193964_11006361F087210MRFLIAALAFASAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLL
Ga0193964_1104593Ga0193964_11045932F062681MTEFTNAVEKQKGLQAYEEWAQQIRYVHSDGWEGTRTIVYNDGRRELYNLKNNQLIFEEPRKTRRRDLIDSNAFTKFLHRIGFYHD
Ga0193964_1104888Ga0193964_11048882F015416EVQLRQNATPSTAFSYTSYSDDVEYDLDGTKTITGGTIINRTYLSGKGVSIENFGDGFNFEYQLGQTIAGASDTLTLCAKGASNNDGVIGSIKWYDTTNG
Ga0193964_1110497Ga0193964_11104971F084398MARLELTLNFPKSFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLS
Ga0193964_1127235Ga0193964_11272352F010536MINVELSKATTGMVIAELLNRKNDKGMPLFMAKSILTPSGQQQLMCIIPNLQIHTEVLGE
Ga0193964_1129497Ga0193964_11294972F004343MTQHREMIEEAKRLLNSKRENIPSMSKDFGKDYWVLTYPCGKIVKTYEDKRKKDIVIQESYL
Ga0193964_1134265Ga0193964_11342651F094948MTAPWVFDCHYNIVHVLSLPQTITKGVGVAKCWADLEILAQSEARCRPTHGCKSVTGTSTKVRQVFINLLGTQAMSIH
Ga0193964_1135414Ga0193964_11354141F006241ISASMKDINTKLKRISSQRDYNSNQKDYFPMVEADSYGDHAIKYLMQKAARENVDYVAVAPFDKVSFRQGYKAGNERFYGYANGKGIGKKGKAVIPDVMSRNARFYGSKAGPTKISLSDPTKPYKSVSSDTFKYPTDHPLKGKEIKSTYHNSAGMNPEKGTKNIPEGDPR
Ga0193964_1137088Ga0193964_11370881F002318KDYILITKDLEQRNPGKKFYSFMDMEDAEIRKKEVILPLPKKYFNKIVKLIEREK
Ga0193964_1137166Ga0193964_11371661F001277KNNFEDRYAKGIHFDIRNKGTCYVTMQTHAGPLEVYIDSMDGLDDAPHVSARIPGRKVKEIFVK
Ga0193964_1138857Ga0193964_11388571F016813MINLTKLPVLNENSEYLIDNSDYSELFERLNYNTEDYLIVYSYNSDFLEVIQELIQYNIEFSHHSCHLSD

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