Metagenome / Metatranscriptome Family F096068

Basic Information
Family ID	F096068
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	55 residues
Representative Sequence	MALLEDIVDFCKKELNIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEID
Number of Associated Samples	87
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	39.05 %
% of genes from short scaffolds (< 2000 bps)	35.24 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (78.095 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater (25.714 % of family members)
Environment Ontology (ENVO)	Unclassified (73.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (69.524 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.75% β-sheet: 13.21% Coil/Unstructured: 66.04%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF06941	NT5C	28.57
PF13392	HNH_3	2.86
PF12705	PDDEXK_1	1.90
PF02945	Endonuclease_7	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	28.57

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.10 %
All Organisms	root	All Organisms	21.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.10 %
cellular organisms	root	All Organisms → cellular organisms	16.19 %
Viruses	superkingdom	All Organisms → Viruses	5.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.10 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	16.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.76 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.76 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.10 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	16.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.76 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.10 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	16.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.76 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.10 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	16.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.76 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.10 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	16.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.76 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000142\|LPaug09P16500mDRAFT_c1008182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2135	Open in IMG/M
3300000262\|LP_A_09_P04_1300DRAFT_1030127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	831	Open in IMG/M
3300003539\|FS891DNA_10130986	All Organisms → Viruses → Predicted Viral	1681	Open in IMG/M
3300003540\|FS896DNA_10099227	Not Available	523	Open in IMG/M
3300005593\|Ga0066837_10048378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1617	Open in IMG/M
3300005595\|Ga0066833_10047291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1217	Open in IMG/M
3300006164\|Ga0075441_10067101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1401	Open in IMG/M
3300006736\|Ga0098033_1017270	Not Available	2260	Open in IMG/M
3300006736\|Ga0098033_1157146	Not Available	636	Open in IMG/M
3300006926\|Ga0098057_1032197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1304	Open in IMG/M
3300007544\|Ga0102861_1205820	Not Available	541	Open in IMG/M
3300007956\|Ga0105741_1106665	Not Available	685	Open in IMG/M
3300008961\|Ga0102887_1158654	Not Available	698	Open in IMG/M
3300009436\|Ga0115008_10576423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	809	Open in IMG/M
3300010155\|Ga0098047_10310697	Not Available	595	Open in IMG/M
3300017757\|Ga0181420_1170192	Not Available	643	Open in IMG/M
3300017775\|Ga0181432_1096407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	877	Open in IMG/M
3300020375\|Ga0211656_10010076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3624	Open in IMG/M
3300020383\|Ga0211646_10332386	Not Available	536	Open in IMG/M
3300020389\|Ga0211680_10268076	Not Available	639	Open in IMG/M
3300020438\|Ga0211576_10084436	All Organisms → Viruses → Predicted Viral	1767	Open in IMG/M
3300021068\|Ga0206684_1103353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	962	Open in IMG/M
3300021084\|Ga0206678_10502455	Not Available	558	Open in IMG/M
3300021443\|Ga0206681_10042459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1764	Open in IMG/M
(restricted) 3300024257\|Ga0233442_1152504	Not Available	606	Open in IMG/M
3300024343\|Ga0244777_10624505	Not Available	651	Open in IMG/M
3300024348\|Ga0244776_10251683	All Organisms → Viruses → Predicted Viral	1229	Open in IMG/M
3300025099\|Ga0208669_1040366	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1100	Open in IMG/M
3300026192\|Ga0207986_1021721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1754	Open in IMG/M
3300026254\|Ga0208522_1042270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1515	Open in IMG/M
3300026321\|Ga0208764_10438258	Not Available	608	Open in IMG/M
3300027501\|Ga0208948_1089580	Not Available	600	Open in IMG/M
3300027788\|Ga0209711_10213190	Not Available	883	Open in IMG/M
3300027810\|Ga0209302_10105568	All Organisms → Viruses → Predicted Viral	1415	Open in IMG/M
3300031143\|Ga0308025_1230602	Not Available	621	Open in IMG/M
3300031886\|Ga0315318_10081133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1777	Open in IMG/M
3300032048\|Ga0315329_10023297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2859	Open in IMG/M
3300032130\|Ga0315333_10076684	All Organisms → Viruses → Predicted Viral	1530	Open in IMG/M
3300032130\|Ga0315333_10499361	Not Available	571	Open in IMG/M
3300032360\|Ga0315334_10663130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	901	Open in IMG/M
3300032360\|Ga0315334_11780063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	523	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.05%
Host-Associated	Host-Associated	0.95%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.05%
Algae	Host-Associated → Algae	0.95%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.05%
Green Algae	Host-Associated → Algae → Green Algae	0.95%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	41.90%
Oceanic	Environmental → Aquatic → Marine → Oceanic	29.52%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.38%
Coastal	Environmental → Aquatic → Marine → Coastal	6.67%
Strait	Environmental → Aquatic → Marine → Strait	4.76%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	1.90%
Inlet	Environmental → Aquatic → Marine → Inlet	0.95%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.95%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	33.33%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	24.76%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.38%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	8.57%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.67%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	4.76%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.76%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	1.90%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.95%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	25.71%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	22.86%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	8.57%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	7.62%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	6.67%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	4.76%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.76%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.76%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.81%
Diffuse Hydrothermal Flow Volcanic Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent	1.90%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.95%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	0.95%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.95%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.95%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.95%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.95%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.95%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.95%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000142	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m	Environmental	Open in IMG/M
3300000179	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 500m	Environmental	Open in IMG/M
3300000181	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 500m	Environmental	Open in IMG/M
3300000225	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 120m	Environmental	Open in IMG/M
3300000238	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 100m	Environmental	Open in IMG/M
3300000254	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 100m	Environmental	Open in IMG/M
3300000262	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_1300	Environmental	Open in IMG/M
3300000264	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_500	Environmental	Open in IMG/M
3300000973	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93	Host-Associated	Open in IMG/M
3300001584	Marine microbial communities from the Deep Pacific Ocean - MP2097	Environmental	Open in IMG/M
3300003271	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10	Environmental	Open in IMG/M
3300003539	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNA	Environmental	Open in IMG/M
3300003540	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNA	Environmental	Open in IMG/M
3300005593	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86	Environmental	Open in IMG/M
3300005595	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B	Environmental	Open in IMG/M
3300005658	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86A	Environmental	Open in IMG/M
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental	Open in IMG/M
3300006093	Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP189	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M
3300007637	Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02	Environmental	Open in IMG/M
3300007956	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um	Environmental	Open in IMG/M
3300008961	Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02	Environmental	Open in IMG/M
3300009003	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725	Environmental	Open in IMG/M
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental	Open in IMG/M
3300009103	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental	Open in IMG/M
3300009441	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome	Environmental	Open in IMG/M
3300009619	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300017706	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental	Open in IMG/M
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300020375	Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)	Environmental	Open in IMG/M
3300020383	Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)	Environmental	Open in IMG/M
3300020389	Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300021068	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015	Environmental	Open in IMG/M
3300021084	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015	Environmental	Open in IMG/M
3300021087	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015	Environmental	Open in IMG/M
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental	Open in IMG/M
3300021352	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015	Environmental	Open in IMG/M
3300021443	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015	Environmental	Open in IMG/M
3300023699	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 81R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024192	Seawater microbial communities from Monterey Bay, California, United States - 47D	Environmental	Open in IMG/M
3300024257 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_150_MG	Environmental	Open in IMG/M
3300024267	Seawater microbial communities from Monterey Bay, California, United States - 28D	Environmental	Open in IMG/M
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300025099	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300026192	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89 (SPAdes)	Environmental	Open in IMG/M
3300026254	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)	Environmental	Open in IMG/M
3300026321	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes)	Environmental	Open in IMG/M
3300026511	Seawater microbial communities from Monterey Bay, California, United States - 27D	Environmental	Open in IMG/M
3300027077	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)	Environmental	Open in IMG/M
3300027253	Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (SPAdes)	Environmental	Open in IMG/M
3300027298	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 (SPAdes)	Environmental	Open in IMG/M
3300027315	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 (SPAdes)	Environmental	Open in IMG/M
3300027501	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)	Environmental	Open in IMG/M
3300027788	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)	Environmental	Open in IMG/M
3300027810	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027833	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300031143	Marine microbial communities from water near the shore, Antarctic Ocean - #422	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031589	Marine microbial communities from David Island wharf, Antarctic Ocean - #35	Environmental	Open in IMG/M
3300031605	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1	Environmental	Open in IMG/M
3300031608	Marine microbial communities from water near the shore, Antarctic Ocean - #1	Environmental	Open in IMG/M
3300031628	Marine microbial communities from water near the shore, Antarctic Ocean - #229	Environmental	Open in IMG/M
3300031629	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80	Environmental	Open in IMG/M
3300031660	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #261	Environmental	Open in IMG/M
3300031683	Marine microbial communities from water near the shore, Antarctic Ocean - #69	Environmental	Open in IMG/M
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental	Open in IMG/M
3300031861	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416	Environmental	Open in IMG/M
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental	Open in IMG/M
3300032019	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515	Environmental	Open in IMG/M
3300032032	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315	Environmental	Open in IMG/M
3300032048	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315	Environmental	Open in IMG/M
3300032130	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
LPaug09P16500mDRAFT_10081821	3300000142	Marine	MALLEDVVDFCKKELKIPQEILVSVEIEDISEDNVKGWTTDSAEDDEYDI
LPjun09P16500mDRAFT_10467351	3300000179	Marine	MALLEDIVDFCKKELEIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGL
LPjun08P4500mDRAFT_10449571	3300000181	Marine	MALLKDVVDFCKIELNIPKDILVSVEIEDISEDNVKGWTTDSAEDDEYDIEI
SI34jun09_120mDRAFT_10048971	3300000225	Marine	MAFLEDVVLFCKRELNIPEEILVSIEQEDIYEDNVKGWTTDSAEDDEYDIEIDTHLGFKEAIIT
SI36aug09_100mDRAFT_10075341	3300000238	Marine	MALLEDIVDFCKKELNIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYD
SI34jun09_100mDRAFT_10200711	3300000254	Marine	MAFLEDVVLFCKRELNIPEEILVSIEQEDIYEDNVKGWTTDSAEDDEYDIEIDTHLG
LP_A_09_P04_1300DRAFT_10301271	3300000262	Marine	MALLKDIVDFCKTELNIPQEVLVSVEVEDLSEDNVKGWTTDSAEDDEYDIEIDTRLSFKETIL
LP_A_09_P04_500DRAFT_10466562	3300000264	Marine	MALYEDIITFCKKELNIPQDILISIEQEDLSEDNVHGWTTDSAEDDEYDIEIDTGLGFKEAIL
BBAY93_101505121	3300000973	Macroalgal Surface	MALLEDIVNFCKKELSIPQEILVSVEVEDISEDNV
JGI12074J15755_10025191	3300001584	Deep Ocean	MALYEDIVLFCKRELNIPLDILISVEQADLSEDSVKGWAIDS
JGI26114J46594_10646433	3300003271	Marine	MIQEVTMALLEDVVNFCKKELSIPQDVLVSVAVEDISEDNVKGWTVDSAEDDEYDIEIDTGLGFKE
FS891DNA_101309865	3300003539	Diffuse Hydrothermal Flow Volcanic Vent	MALLKDIVDFCKTELNIPQDVLVSVEREDISEDNVKGWTTDSAEDDEYDIEIDSRLSFKETILTV
FS896DNA_100992273	3300003540	Diffuse Hydrothermal Flow Volcanic Vent	VEKIMALLEDIVDFCKKELKIPQDILVSVEREDISEDNVKGWT
Ga0066837_100483781	3300005593	Marine	MIQEVTMALLEDVVNFCKKELSIPQDILVSVAVEDISEDNVKGWTVDSAEDDEYDIEIDTGLGFKETIITVCHEMV
Ga0066833_100472914	3300005595	Marine	MALYEDIVLFCKRELNIPLDILISVEQADLSEDSVKGWAIDSAEDDEYDIEIDTGLGFKEAIITVCHEMVH
Ga0066842_100965541	3300005658	Marine	MIQEVTMALLEDVVNFCKKELSIPQDILVSVAVEDISEDNVKGLTVDSAEDDEYDIE
Ga0070743_102230233	3300005941	Estuarine	MALLEDIVDFCKKELEIPQEVLVSVEVEDISEDNVKGWTTDSA
Ga0082019_10315631	3300006093	Marine	MALYEDIVLFCKRELNIPLDILISVEQADLSEDSVKGWAIDSAEDDEYD
Ga0075441_100671011	3300006164	Marine	MAYLEDVVLFCKKELNIPDEILVSLETEDLSEDNVK
Ga0098033_10172708	3300006736	Marine	MALYEDIITFCKKELNIPQDVLVSIEQEDLSEDSVKGWAIDSAEDDEYDIEIDTGLGFK
Ga0098033_11571461	3300006736	Marine	MALYEDIVLFCKRELNIPLDILISVEQEDLSEDSVKGWAIDSAEDDEYDIEIDTGLGFKEAIITV
Ga0098057_10321975	3300006926	Marine	MALYEDIVTFCKKELNIPQDVLVSIEQEDLSEDNVHGWTTDS
Ga0102861_12058201	3300007544	Estuarine	VEVTMALLEDIVDFCKKELNIPQEILVSVEVEDIS
Ga0102906_10342931	3300007637	Estuarine	MEVTMALLEDIVDFCKKELEIPQDILVSVEREDISE
Ga0102906_11044204	3300007637	Estuarine	VEVTMALLEDIVDFCKKELNIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDT
Ga0105741_11066653	3300007956	Estuary Water	MEVTMALLEDIVDFCKKELKIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLSFKETIL
Ga0102887_11586541	3300008961	Estuarine	MEVTMALLEDIVDFCKKELNIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLGF
Ga0102813_10829654	3300009003	Estuarine	VEKIMALLEDIVDFCKKELEIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEY
Ga0102812_107010753	3300009086	Estuarine	MEVTMALLEDIVDFCKKELKIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLSFKETILTLC
Ga0117901_12339071	3300009103	Marine	MALLEDIVNFCKKELSIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLSFK
Ga0114994_107909833	3300009420	Marine	MALLEDVVVFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHLGFKESII
Ga0115008_101283501	3300009436	Marine	MEVTMALLEDIVDFCKKELKVPQEILVSVEVTDISEDNVKGWTTDSAEDDEYDIEIDTGL
Ga0115008_105764234	3300009436	Marine	MEVTMALLEDIVDFCKKELSIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLSF
Ga0115007_105680781	3300009441	Marine	MEVHMALLEDVMLFCKKELNIPDEILVSIEQEDISEDNVKGWTTDSAEDDEYDIEIDTHL
Ga0115007_112809752	3300009441	Marine	MALLEDVVIFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEI
Ga0105236_10602473	3300009619	Marine Oceanic	MEVTMALLEDIVDFCKKELSIPQDVLISVEREDISEDNVRGWTTDSAEDDEYDIEIDTRLGFKETI
Ga0115000_104494275	3300009705	Marine	MALLEDVVLFCKKELNIPEEILVSIEQEDIIEDNVKGW
Ga0115002_109662171	3300009706	Marine	MALLEDVVIFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHL
Ga0098047_103106971	3300010155	Marine	MALYEDIVLFCKRELNIPLDILISVEQADLSEDSVKGWAIDSAEDDEYDIEIDTGLGFKEAIIT
Ga0181377_10614204	3300017706	Marine	MALLEDIVDFCKKELSIPQEILVSVEVEDISEDNV
Ga0181397_11800373	3300017744	Seawater	MALLEDIVDFCKKELSIPQEILVSIEVEDISEDNVKGWTTDSAEDDEYDIEI
Ga0181420_11701921	3300017757	Seawater	MALLEDIVDFCKKELSIPQEILVSIEVEDISEDNVKGW
Ga0181430_11660161	3300017772	Seawater	MALLEDIVDFCKKELSIPQEILVSVEVEDISEDNVKGWTTDSAEDDE
Ga0181432_10964074	3300017775	Seawater	VVKVENSGGTMALYEDIITFCKKELSIPQDVLVSIEQEDLSEDNV
Ga0181432_12653061	3300017775	Seawater	MALLEDIVDFCKKELSIPQDILVSVEREDISEDNVKGWTTDSAEDDEYDIEIDAR
Ga0211656_100100761	3300020375	Marine	MALLEDVVDFCKIELNIPQEVLVSVEVEDISEDNVKGWTTD
Ga0211646_103323861	3300020383	Marine	MALLEDIVDFCKKELSIPQDVLVSVEREDISEDNVKGWTTDSAEDDEY
Ga0211680_102680763	3300020389	Marine	MALLEDIVDFCKIELNIPKDVLVSVEIEDISEDNVKGWTTDSAEDDEYDIEIDTGLGFKETILT
Ga0211576_100844361	3300020438	Marine	MALLEDIVDFCKKELNIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLGFKETILTLCH
Ga0206684_11033531	3300021068	Seawater	MALLEDIVDFCKKELNIPQEVLVSVEVEDISEDNVKGWTTDSAEDDE
Ga0206678_101396974	3300021084	Seawater	MALLEDIVDFCKIELNIPKDVLVSVEIEDISEDNVKGWTTDSAEDD
Ga0206678_105024551	3300021084	Seawater	MEVTMALLEDIVDFCKTELNIPQDVLVSVEREDISEDNVKGWTTDSAEDDE
Ga0206683_103165174	3300021087	Seawater	MALLEDVIDFCKIELNIPQEVLVSVEVEDISEDNVKGWTTDS
Ga0206682_103021791	3300021185	Seawater	MALLEDIVDFCKKELEIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLGFKE
Ga0206682_104474541	3300021185	Seawater	MALLEDIVDFCKKELEIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEI
Ga0206680_101055281	3300021352	Seawater	MALLEDIVDFCKKELNIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTG
Ga0206681_100424591	3300021443	Seawater	MALYEDIVTFCKKELNIPPDVLVSIEQEDLSEDNVHGWTTDSAEDDEYDIEIDTRLGFKEAI
Ga0206681_102757981	3300021443	Seawater	MALYEDIITFCKKELNIPQDVLVSIEQEDLSEDNVHGWTTDSAEDDEYDI
Ga0228695_10680931	3300023699	Seawater	MALLEDIVDFCKKELNIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTRLSFKETI
Ga0228637_10816033	3300024192	Seawater	MALLEDIVDFCKKELSIPKEILVSIEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLSFKE
(restricted) Ga0233442_11525041	3300024257	Seawater	MALLEDIVDFCKKELKIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEID
Ga0228623_11045791	3300024267	Seawater	MALLEDIVDFCKKELSIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLSFKETILTLCHEMV
Ga0244777_106245053	3300024343	Estuarine	MALYEDIITFCKKELNIPQDILISIEQEDLSEDNVHGWTTDSAEDDEYDIEI
Ga0244776_102516831	3300024348	Estuarine	MALLEDIVDFCKKELNIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLGF
Ga0208669_10403661	3300025099	Marine	MALLEDIVDFCKKELSIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLSFKE
Ga0209631_101790225	3300025890	Pelagic Marine	MALLEDIVDFCKKELSIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEI
Ga0207986_10217217	3300026192	Marine	MALYEDIITFCKKELNIPQDVLVSIEQEDLSEDSVKGWAIDSAEDDEYDIEIDTGLGFKEAILTVCHEM
Ga0208522_10422701	3300026254	Marine	MIQEVTMALLEDVVNFCKKELSIPQDILVSVAVEDISEDNVKGWTVDSAEDDE
Ga0208764_104382583	3300026321	Marine	MALLEDIVDFCKKELSIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLSFKETILTLCH
Ga0233395_11604441	3300026511	Seawater	MALLEDIVDFCKKELNIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEID
Ga0208941_10338203	3300027077	Marine	MALLEDIVDFCKKELKIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIE
Ga0208680_10877593	3300027253	Estuarine	MALLEDIVDFCKKELNIPQEILVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTRLSFKETILTVCHE
Ga0208970_10503454	3300027298	Marine	MIQEVTMALLEDVVNFCKKELSIPQDVLVSVAVEDISEDNVKGWTVDSAEDDEYDIEIDTGLGFK
Ga0208949_10432154	3300027315	Marine	MIQEVTMALLEDVVNFCKKELSIPQDILVSVAVEDISEDNVKGWTVDSAEDDEYDIEIDT
Ga0208948_10895801	3300027501	Marine	MALLEDIVDFCKKELEIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTG
Ga0209711_102131901	3300027788	Marine	MALLEDVVVFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHLGFKESIITVCHEMV
Ga0209302_101055681	3300027810	Marine	MALLEDVMLFCKKELNIPDEILVSIEQEDISEDNVKGWTTDSAEDDEYDIEIDTHLGFKEAIITVCHEMV
Ga0209092_102355114	3300027833	Marine	MALLEDIVDFCKKELKVPQEILVSVEVTDISEDNVKGWTTDSAEDDEYDIEIDTGLG
Ga0308025_12306021	3300031143	Marine	MAYLEDVVLFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHLGFKEAIITVCHEMVH
Ga0307488_103654243	3300031519	Sackhole Brine	MALLEDVVIFCKKELNIPDEILVSLETEDLSEDNV
Ga0307996_11431981	3300031589	Marine	MALLEDVVLFCKRELKIPDEILVSIEQEDIYEDNVKGWTTDSAEDDEYDIEIDTHLGFKEAIITVC
Ga0302132_103997062	3300031605	Marine	MALLEDVVIFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHLGFKE
Ga0307999_10438095	3300031608	Marine	MALLEDVVIFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHLGFKESIITVCHEMV
Ga0308014_10608285	3300031628	Marine	MALLEDVVIFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHLGFK
Ga0307985_103457511	3300031629	Marine	MALLEDVVLFCKKELNIPDEILVSLETEDLSEDNVKGWTV
Ga0307994_12090443	3300031660	Marine	MALLEDVVIFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHLGFKESIITVCHEMVH
Ga0308006_101637511	3300031683	Marine	MALLEDVVLFCKRELNIPEEILVSIESEDISEDNVKGWTTDSAED
Ga0315332_101145651	3300031773	Seawater	MIQEVTMALLEDVVNFCKKELSIPQDILVSVAVEDISEDNVKGWTVDSAEDDEYDIEIDTGLGFKETI
Ga0315319_102147651	3300031861	Seawater	MALLEDVIDFCKIELNIPQEVLVSVEVEDISEDNVKGWTTDSAENDEYDIEIDTGLGF
Ga0315318_100811331	3300031886	Seawater	MEVTMALLEDIVDFCKTELNIPQDVLVSVEREDISEDNVKGWTTDSAEDDEYDIEIDTRLSFKETILTV
Ga0315324_100187401	3300032019	Seawater	MEVTMALLEDIVDFCKTELNIPQDVLVSVEREDISEDNVKGWTTDSAEDDEYDIEIDARLSFKETILTVCHEMVH
Ga0315327_1001386310	3300032032	Seawater	MALLEDIVDFCKKELEIPQDILVSVEREDISEDNVKGWT
Ga0315327_102405854	3300032032	Seawater	MALLEDIVDFCKKELSIPQEILVSVEVEDISEDNVKGWTTDSAEDDEY
Ga0315329_100232971	3300032048	Seawater	MALYEDIITFCKKELNIPQDVLVSIEQEDLSEDNVHGWTTDSAE
Ga0315329_101777591	3300032048	Seawater	MALLEDIVDFCKKELEIPQDILVSVEREDISEDNVKGWTTDSAEDDEYDIEIDTRLSFKE
Ga0315329_102127231	3300032048	Seawater	MEVTMALLEDIVDFCKTELNIPQDVLVSVEREDISEDNVKGWTTDSAEDDEYDIEIDARLSFKETILTVCHEMV
Ga0315329_105474743	3300032048	Seawater	MALYEDIVLFCKKELNIPQDILISIEQEDLSEDNVKGWTTDSAEDDEYDIEIDTRLG
Ga0315329_107047851	3300032048	Seawater	MALYEDIITFCKKELNIPQDILISIEQEDLSEDNVHGWTTDSAEDDEYDIEIDTGLGFKEAI
Ga0315333_100766845	3300032130	Seawater	MALLEDIVDFCKKELNIPQEVLVSVEVEDISEDNVKGWTTDSAEDDEYDIEIDTGLGFKETILTVCHEMVHV
Ga0315333_104993613	3300032130	Seawater	MALLEDIVDFCKTELNIPKDVLVSVETEDISEDNVKGWTTDSAEDDEYDIE
Ga0315334_102318365	3300032360	Seawater	MALYEDIVTFCKKELNIPPDVLVSIEQEDLSEDNVHGWTTDSAEDDEYDIE
Ga0315334_105341184	3300032360	Seawater	MIQEVTMALLEDVVNFCKKELSIPQDVLVSVAVEDISEDNVKGW
Ga0315334_106631304	3300032360	Seawater	MALLKDIVDFCKTELNIPQEVLVSVEVEDLSEDNVKGWTTDSAEDDEYD
Ga0315334_115164541	3300032360	Seawater	MALYEDIITFCKKELNIPQDVLVSIEQEDLSEDSVKGWTIDSAEDDEYDIEI
Ga0315334_117800631	3300032360	Seawater	MALYEDIVLFCKKELNIPQDVLVSIEQEDLSEDNVHGWTTDSAEDDEYDIEIDT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters