Metagenome Family F096387

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096387
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	50 residues
Representative Sequence	MSYIREVAIAGIVILEAIALYKGIDGQILSLVIATIAGIAGYTLRRVRED
Number of Associated Samples	27
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	77.88 %
% of genes near scaffold ends (potentially truncated)	10.58 %
% of genes from short scaffolds (< 2000 bps)	44.23 %
Associated GOLD sequencing projects	26
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (38.462 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment (43.269 % of family members)
Environment Ontology (ENVO)	Unclassified (43.269 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (57.692 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.41% β-sheet: 0.00% Coil/Unstructured: 43.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13385	Laminin_G_3	41.35
PF02018	CBM_4_9	19.23
PF03175	DNA_pol_B_2	3.85
PF11259	DUF3060	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.81 %
Unclassified	root	N/A	20.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.27 %
Unclassified	root	N/A	20.19 %
Viruses	superkingdom	All Organisms → Viruses	11.54 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	38.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.81 %
Unclassified	root	N/A	20.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.54 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.88 %
Unclassified	root	N/A	20.19 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	17.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.54 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	1.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	26.92 %
Unclassified	root	N/A	20.19 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	16.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.54 %
Candidatus Thorarchaeota	phylum	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota	1.92 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	26.92 %
Unclassified	root	N/A	20.19 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	16.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.54 %
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	26.92 %
Unclassified	root	N/A	20.19 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	16.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.54 %
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003332\|GBSed_10003096	Not Available	11115	Open in IMG/M
3300003332\|GBSed_10003427	Not Available	10355	Open in IMG/M
3300003332\|GBSed_10003479	All Organisms → cellular organisms → Archaea	10246	Open in IMG/M
3300003332\|GBSed_10005780	All Organisms → cellular organisms → Archaea	10071	Open in IMG/M
3300003332\|GBSed_10007228	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	6166	Open in IMG/M
3300003332\|GBSed_10007485	Not Available	6017	Open in IMG/M
3300003332\|GBSed_10012885	All Organisms → cellular organisms → Archaea	8952	Open in IMG/M
3300003332\|GBSed_10016482	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3365	Open in IMG/M
3300003332\|GBSed_10041605	All Organisms → Viruses → Predicted Viral	1684	Open in IMG/M
3300003332\|GBSed_10082304	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	993	Open in IMG/M
3300003332\|GBSed_10129568	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	691	Open in IMG/M
3300003332\|GBSed_10131984	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	680	Open in IMG/M
3300005098\|Ga0072683_103210	All Organisms → cellular organisms → Archaea	10524	Open in IMG/M
3300005098\|Ga0072683_103213	Not Available	7740	Open in IMG/M
3300005098\|Ga0072683_117002	All Organisms → Viruses → Predicted Viral	4455	Open in IMG/M
3300005099\|Ga0072682_102192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	7283	Open in IMG/M
3300005099\|Ga0072682_111428	All Organisms → cellular organisms → Archaea	11104	Open in IMG/M
3300005099\|Ga0072682_131768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3446	Open in IMG/M
3300005265\|Ga0073580_103890	All Organisms → cellular organisms → Archaea	10716	Open in IMG/M
3300005265\|Ga0073580_115487	All Organisms → cellular organisms → Archaea	6489	Open in IMG/M
3300005265\|Ga0073580_123479	All Organisms → cellular organisms → Archaea	10170	Open in IMG/M
3300005265\|Ga0073580_124129	All Organisms → cellular organisms → Archaea	6439	Open in IMG/M
3300010330\|Ga0136651_10076490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1781	Open in IMG/M
3300010330\|Ga0136651_10592821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	535	Open in IMG/M
3300010332\|Ga0116200_10064177	Not Available	1897	Open in IMG/M
3300013099\|Ga0164315_11657264	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	503	Open in IMG/M
3300013103\|Ga0164318_10012510	Not Available	8265	Open in IMG/M
3300013103\|Ga0164318_10100071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2679	Open in IMG/M
3300013103\|Ga0164318_10152124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2112	Open in IMG/M
3300013103\|Ga0164318_10180815	Not Available	1913	Open in IMG/M
3300013103\|Ga0164318_10258630	All Organisms → Viruses → Predicted Viral	1554	Open in IMG/M
3300013103\|Ga0164318_10301951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1419	Open in IMG/M
3300013103\|Ga0164318_10541219	All Organisms → Viruses → Predicted Viral	1000	Open in IMG/M
3300013103\|Ga0164318_11306274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	587	Open in IMG/M
3300014886\|Ga0180300_10001669	All Organisms → cellular organisms → Archaea	10338	Open in IMG/M
3300014886\|Ga0180300_10104787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1113	Open in IMG/M
3300014911\|Ga0180301_10247013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	975	Open in IMG/M
3300014913\|Ga0164310_10006931	All Organisms → cellular organisms → Archaea	6686	Open in IMG/M
3300014913\|Ga0164310_10036731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3031	Open in IMG/M
3300014913\|Ga0164310_10045132	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2734	Open in IMG/M
3300014913\|Ga0164310_10207549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1192	Open in IMG/M
3300014913\|Ga0164310_10321801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	921	Open in IMG/M
3300014913\|Ga0164310_10460485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	743	Open in IMG/M
3300014914\|Ga0164311_10027129	All Organisms → Viruses → Predicted Viral	3364	Open in IMG/M
3300014914\|Ga0164311_10098856	All Organisms → Viruses → Predicted Viral	1746	Open in IMG/M
3300014914\|Ga0164311_10187736	All Organisms → Viruses → Predicted Viral	1227	Open in IMG/M
3300014914\|Ga0164311_10282296	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	973	Open in IMG/M
3300021468\|Ga0190360_1001772	Not Available	10930	Open in IMG/M
3300021469\|Ga0190361_1001051	Not Available	10634	Open in IMG/M
3300021469\|Ga0190361_1008067	All Organisms → Viruses → Predicted Viral	3710	Open in IMG/M
3300021469\|Ga0190361_1034103	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1691	Open in IMG/M
3300021472\|Ga0190363_1124213	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	901	Open in IMG/M
3300021488\|Ga0190305_1000410	Not Available	10283	Open in IMG/M
3300021488\|Ga0190305_1000522	All Organisms → cellular organisms → Archaea	9005	Open in IMG/M
3300021488\|Ga0190305_1000592	All Organisms → cellular organisms → Archaea	8374	Open in IMG/M
3300021488\|Ga0190305_1001082	All Organisms → cellular organisms → Archaea → Euryarchaeota	5923	Open in IMG/M
3300021488\|Ga0190305_1001891	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	4423	Open in IMG/M
3300021488\|Ga0190305_1002122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4154	Open in IMG/M
3300021488\|Ga0190305_1002406	All Organisms → Viruses → Predicted Viral	3881	Open in IMG/M
3300021488\|Ga0190305_1005336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2537	Open in IMG/M
3300021488\|Ga0190305_1008275	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1980	Open in IMG/M
3300021488\|Ga0190305_1019491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1177	Open in IMG/M
3300021488\|Ga0190305_1022449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1073	Open in IMG/M
3300021488\|Ga0190305_1039000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	724	Open in IMG/M
3300021488\|Ga0190305_1044106	Not Available	661	Open in IMG/M
3300021488\|Ga0190305_1048076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	621	Open in IMG/M
3300021492\|Ga0190336_1000218	All Organisms → cellular organisms → Bacteria → Terrabacteria group	11238	Open in IMG/M
3300021493\|Ga0190306_1006317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2589	Open in IMG/M
3300021493\|Ga0190306_1011466	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1780	Open in IMG/M
3300021493\|Ga0190306_1023749	Not Available	1106	Open in IMG/M
3300021493\|Ga0190306_1028348	Not Available	982	Open in IMG/M
3300021493\|Ga0190306_1067896	Not Available	532	Open in IMG/M
3300021495\|Ga0190352_1001229	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	5769	Open in IMG/M
3300021495\|Ga0190352_1065279	Not Available	555	Open in IMG/M
3300021502\|Ga0190307_1076829	Not Available	551	Open in IMG/M
3300021507\|Ga0190316_1000693	All Organisms → cellular organisms → Archaea	10375	Open in IMG/M
3300021507\|Ga0190316_1000745	All Organisms → cellular organisms → Archaea	10110	Open in IMG/M
3300021507\|Ga0190316_1000753	All Organisms → cellular organisms → Archaea	10062	Open in IMG/M
3300021507\|Ga0190316_1001248	Not Available	8109	Open in IMG/M
3300021507\|Ga0190316_1002146	All Organisms → cellular organisms → Archaea	6192	Open in IMG/M
3300021507\|Ga0190316_1004504	Not Available	4302	Open in IMG/M
3300021507\|Ga0190316_1015228	Not Available	2206	Open in IMG/M
3300021507\|Ga0190316_1019506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1900	Open in IMG/M
3300021507\|Ga0190316_1034666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1327	Open in IMG/M
3300021507\|Ga0190316_1042294	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1164	Open in IMG/M
3300021509\|Ga0190304_1001594	All Organisms → cellular organisms → Archaea	10066	Open in IMG/M
3300021509\|Ga0190304_1003533	All Organisms → cellular organisms → Archaea	6354	Open in IMG/M
3300021509\|Ga0190304_1011621	All Organisms → Viruses → Predicted Viral	2955	Open in IMG/M
3300021509\|Ga0190304_1013252	All Organisms → cellular organisms → Bacteria	2693	Open in IMG/M
3300021509\|Ga0190304_1021566	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1946	Open in IMG/M
3300021509\|Ga0190304_1041942	Not Available	1237	Open in IMG/M
3300021509\|Ga0190304_1071508	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	853	Open in IMG/M
3300021509\|Ga0190304_1082190	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	771	Open in IMG/M
3300021509\|Ga0190304_1087401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	738	Open in IMG/M
3300021512\|Ga0190303_1004988	All Organisms → Viruses → Predicted Viral	4785	Open in IMG/M
3300021512\|Ga0190303_1018172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2242	Open in IMG/M
3300021512\|Ga0190303_1039347	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1397	Open in IMG/M
3300021513\|Ga0190315_1001344	All Organisms → cellular organisms → Archaea	10132	Open in IMG/M
3300021513\|Ga0190315_1011753	Not Available	2618	Open in IMG/M
3300021592\|Ga0190362_1000565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4847	Open in IMG/M
3300021592\|Ga0190362_1024658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	694	Open in IMG/M
3300024423\|Ga0190286_1002350	All Organisms → cellular organisms → Bacteria	6706	Open in IMG/M
3300024423\|Ga0190286_1007859	All Organisms → Viruses → Predicted Viral	3395	Open in IMG/M
3300025156\|Ga0209834_10085934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1300	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	90.38%
Unclassified	Environmental → Aquatic → Marine → Unclassified	9.62%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	79.81%
Microbial Mats	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats	10.58%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	9.62%

Habitat	Taxonomy	Distribution
Hydrothermal Vent Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment	43.27%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	21.15%
Marine Hydrothermal Vent Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment	11.54%
Hydrothermal Vent Microbial Mat	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat	10.58%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	5.77%
Sediment	Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment	3.85%
Marine Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent	3.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003332	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1	Environmental	Open in IMG/M
3300005098	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf	Environmental	Open in IMG/M
3300005099	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf	Environmental	Open in IMG/M
3300005265	Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561	Environmental	Open in IMG/M
3300010330	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG	Environmental	Open in IMG/M
3300010332	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG	Environmental	Open in IMG/M
3300013099	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cm	Environmental	Open in IMG/M
3300013103	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm	Environmental	Open in IMG/M
3300014886	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm	Environmental	Open in IMG/M
3300014911	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay16, Core 4569-2, 12-15 cm	Environmental	Open in IMG/M
3300014913	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm	Environmental	Open in IMG/M
3300014914	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay2, Core 4569-9, 9-12 cm	Environmental	Open in IMG/M
3300021468	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MG	Environmental	Open in IMG/M
3300021469	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG	Environmental	Open in IMG/M
3300021472	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG	Environmental	Open in IMG/M
3300021488	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG	Environmental	Open in IMG/M
3300021492	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-9-10_MG	Environmental	Open in IMG/M
3300021493	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-3-4_MG	Environmental	Open in IMG/M
3300021495	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG	Environmental	Open in IMG/M
3300021502	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-4-5_MG	Environmental	Open in IMG/M
3300021507	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG	Environmental	Open in IMG/M
3300021509	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG	Environmental	Open in IMG/M
3300021512	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-0-1_MG	Environmental	Open in IMG/M
3300021513	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG	Environmental	Open in IMG/M
3300021592	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-5-6_MG	Environmental	Open in IMG/M
3300024423	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-3-4_MG	Environmental	Open in IMG/M
3300025156	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GBSed_100030968	3300003332	Marine Hydrothermal Vent Sediment	MTSYIREVAIAGLVILEAIALMKGIDGTLLSVVIAVIAGLAGYTVRRVRE*
GBSed_100034278	3300003332	Marine Hydrothermal Vent Sediment	MKMSYVREVAIAGLVVLESLALMKGIDGTILSMVIAIIAGLAGYTVRRVRG*
GBSed_1000347912	3300003332	Marine Hydrothermal Vent Sediment	MAYIREVAIAGIVILEAIALYKGIDGQVLSLVIATIAGIAGYTLRRIRED*
GBSed_100057807	3300003332	Marine Hydrothermal Vent Sediment	MTCIREVAVAGIVILESIALMKGIDGQLLSLVIATIAGIAGYTLRRVREE*
GBSed_1000722812	3300003332	Marine Hydrothermal Vent Sediment	MQYVREVAIAGIVVLESIALLKGIDGQILSLVIATIAGIAGYTLRRIKED*
GBSed_100074854	3300003332	Marine Hydrothermal Vent Sediment	MQYIREVAIAGIVLLEAIALMKGIDGQILSLVIATIAGIAGYTLRRVRED*
GBSed_1001288512	3300003332	Marine Hydrothermal Vent Sediment	MSYVREVAIAGIVILEVIALVKGIDGQILSLVIATIAGIAGYTLRKVREE*
GBSed_100164823	3300003332	Marine Hydrothermal Vent Sediment	MQYIREVAIAGIVILEAIALMKGIDGQILSLVIATIAGIAGYTLRRVRED*
GBSed_100416053	3300003332	Marine Hydrothermal Vent Sediment	VSYIREVAIAGIVVLEAIALCRGIDGALLSMVIATIAGIAGYTLKRVREE*
GBSed_100823041	3300003332	Marine Hydrothermal Vent Sediment	MQYIREVAIAGIVLLEAIALMKGIDGQVLSLVIATIAGIAGYTLRRIRED*
GBSed_101295681	3300003332	Marine Hydrothermal Vent Sediment	EVAIAGLVILEAIALMKGINGMLLSLVIAVIAGLAGYTVRRVRE*
GBSed_101319841	3300003332	Marine Hydrothermal Vent Sediment	AGIVVLEAIALMKGIDGQILSLVIATIAGIAGYTLRRVRED*
Ga0072683_1032107	3300005098	Marine	MTHVREIAIAGLVILEVIALQRGIDGALFSVVIAIIAGLAGYSVRVVKEQ*
Ga0072683_1032135	3300005098	Marine	MDYVREVAIAGLVILEAIALLEGIDGQVLSLVIATIAGIAGYTLRKVKET*
Ga0072683_1170026	3300005098	Marine	VNYIREVAIAGIVILECVALCKGMDGALLSMVIATIAGIAGYTLRKVKEE*
Ga0072682_1021922	3300005099	Marine	MTSYIREVAIVGLVVLEAIALMKGIDGTLLSVVIAVIAGLAGYTVRRVRE*
Ga0072682_11142813	3300005099	Marine	MDYIREVAIAGIVVLEAIALLQGIDGTLLSMVIATIAGIAGYTFKKIKEG*
Ga0072682_1317683	3300005099	Marine	MNYIREVAIAGIVVLEAIALCKGIDGAILSMVIATIAGIAGYTLKRVREE*
Ga0073580_1038908	3300005265	Sediment	MIDVSYIREVAIAGIVILEAIALYKGIDGQVLSVVIATIAGLAGYALRKIRED*
Ga0073580_1154873	3300005265	Sediment	MTYIREIAIAGIVMLECVALCKGIDGQILSLVIATIAGIAGYTLRKVREE*
Ga0073580_1234797	3300005265	Sediment	MQYVREVAIAGIVILEAIALCKGIDGQILSLVIATIAGIAGYTLRKIRED*
Ga0073580_12412911	3300005265	Sediment	MSYIREVAIAGIVILEAIALYKGIDGQILSLVIATIAGIAGYTLRRVRED*
Ga0136651_100764904	3300010330	Marine Hydrothermal Vent	MEYIREVAIAGLVILEAIALLEGIDGQVLSLVIATIAGIAGYTLRKVKEA*
Ga0136651_105928211	3300010330	Marine Hydrothermal Vent	MDYVREVAIAGLVILEAIALLQGIDGQVLSLVIATIAGIAGYTLRKVKEA*
Ga0116200_100641775	3300010332	Marine Hydrothermal Vent	MTYIREVAIAGLVILEVIALLQGIDGQVLSLVIATIAGIAGYTLRKVKEA*
Ga0164315_116572643	3300013099	Marine Sediment	VAISRIVLLESIALYTGIDGQVLSLVIATIAGIAGYTLRKIREE*
Ga0164318_100125104	3300013103	Marine Sediment	MEYVREVAIAGLVILEAIALLKGIDGQVLSLVIATIAGIAGYTLRKVKEA*
Ga0164318_101000712	3300013103	Marine Sediment	MTYIREVAIGGLVILEAIALHEGIDGTLFSVVIALIAGLAGYSVRVVKEK*
Ga0164318_101521243	3300013103	Marine Sediment	MDYVREVAIAGLVILEVIALLQGIDGQVLSLVIATIAGIAGYTLRKVKEA*
Ga0164318_101808154	3300013103	Marine Sediment	MNSYIREVAIVGIVILEAIALCKGIDGQIFSLVIATIAGIAGYALRRIRED*
Ga0164318_102586303	3300013103	Marine Sediment	MTYIREVAIAGLVILEAIALQHGIDGVLFSTVIAVIAGLAGYSVRVVKEK*
Ga0164318_103019513	3300013103	Marine Sediment	MDYVREVAIAGLVILEAIALLKGIDGQVLSLVIATIAGIAGYTLRRVKEA*
Ga0164318_105412192	3300013103	Marine Sediment	MTSYIREVAIAGLVILEAIALMKGINGMLLSLVIAVIAGLAGYTVRRVRE*
Ga0164318_113062741	3300013103	Marine Sediment	MDYVREVAIAGLVILEAIALFNGIDGQVLSLVIATIAGIA*
Ga0180300_1000166912	3300014886	Marine Sediment	MAYVREVAIAGIVLLESIALYKGIDGQVLSLVIATIAGIAGYTLRKIREE*
Ga0180300_101047872	3300014886	Marine Sediment	VIDVSYIREVAIAGIVVLEAIALCRGIDGALLSMVIATIAGIAGYTLKRVREE*
Ga0180301_102470132	3300014911	Marine Sediment	VIDVGYIREVAIAGIVVLEAIALCRGIDGALLSMVIATIAGIAGYTLKRVREE*
Ga0164310_1000693113	3300014913	Marine Sediment	VLKMTYIREVAIAGIVILEAIALCKGIDGQVLSLVIATIAGIAGYTLRKVREE*
Ga0164310_100367313	3300014913	Marine Sediment	MDYVREVAIAGLVMLEAIALLEGIDGQVLSLVIATIAGIAGYTLRKVKEA*
Ga0164310_100451321	3300014913	Marine Sediment	AIAGIVILEAIALYKGIDGQVLSLVIATIAGIAGYTLRRIRED*
Ga0164310_102075492	3300014913	Marine Sediment	MDYVREVAIAGLVILEAIALLNGIDGQVLSLVIATIAGIAGYTLRKVKEA*
Ga0164310_103218012	3300014913	Marine Sediment	MDYVREVAIAGLVILEAIALFNGIDGQVLSLVIATIAGIAGYTLRRVKEG*
Ga0164310_104604852	3300014913	Marine Sediment	MDYVREVAIAGLVILEAIALLEGIDGQVLSLVIATIAGIAGYTLRKVKEG*
Ga0164311_100271293	3300014914	Marine Sediment	MDYVREVAIAGLVILEAIALFNGIDGQVLSLVIATIAGIAGYTFRKVKEA*
Ga0164311_100988562	3300014914	Marine Sediment	VIAKMDYVREVAIAGLVILEAIALLEGIDGQVLSLVIATIAGIAGYTLRKVKET*
Ga0164311_101877362	3300014914	Marine Sediment	MDYVREVAIAGLVILEAIALFNGIDGQVLSLVIATIAGIAGYTLRKVKEA*
Ga0164311_102822963	3300014914	Marine Sediment	VKMEYIREVAIAGIVILEAIALYKGIDGQVLSLVIATIAGIAGYTLRRIRED*
Ga0190360_10017726	3300021468	Hydrothermal Vent Microbial Mat	MDYVREVAIAGLVILEAIALLQGIDGQVLSLVIATIAGIAGYTLRKVKEA
Ga0190361_10010517	3300021469	Hydrothermal Vent Microbial Mat	VSYIREVAIAGIVVLEAIALCKGIDGAILSMVIATIAGIAGYTLKRVREE
Ga0190361_10080673	3300021469	Hydrothermal Vent Microbial Mat	MGVICMNSYIREVAIVGIVILEAIALCKGIDGQIFSLVIATIAGIAGYALRRIRED
Ga0190361_10341032	3300021469	Hydrothermal Vent Microbial Mat	MEYIREVAIIGIVVLEAIALYKGIDGQVLSLVIATIAGIAGYTLRRIRED
Ga0190363_11242132	3300021472	Hydrothermal Vent Microbial Mat	MAYIREVAIMGIVVLEAIALYKGIDGQVLSLVIATIAGIAGYTLRKIRED
Ga0190305_100041016	3300021488	Hydrothermal Vent Sediment	MDYVREVAIAGLVILEAIALLEGIDGQVLSLVIATIAGIAGYTLRKVKET
Ga0190305_100052213	3300021488	Hydrothermal Vent Sediment	VVTIGYIREVAIAGIVVLEAIALCKGIDGAILSMVIATIAGIAGYTLRKVKEE
Ga0190305_100059211	3300021488	Hydrothermal Vent Sediment	MVNYIREVAIAGIVILEAIALMKGIDGQVLSLVIATIAGIAGYTLRRVRED
Ga0190305_10010825	3300021488	Hydrothermal Vent Sediment	MSYVREVAIAGIVILEVIALVKGIDGQILSLVIATIAGIAGYTLRKVREE
Ga0190305_100189112	3300021488	Hydrothermal Vent Sediment	MQYIREVAIAGIVILEAIALYKGIDGQILSLVIATIAGIAGYTLRRVRED
Ga0190305_10021223	3300021488	Hydrothermal Vent Sediment	VGYIREVAIAGIVVLEAIALCRGIDGALLSMVIATIAGIAGYTLKRVREE
Ga0190305_10024066	3300021488	Hydrothermal Vent Sediment	MNYIREVAIAGIVVLEAIALCKGIDGAILSMVIATIAGIAGYTLKRVREE
Ga0190305_10053363	3300021488	Hydrothermal Vent Sediment	MQYIREVAIAGIVILEAIALMKGIDGQILSLVIATIAGIAGYTLRRVRED
Ga0190305_10082752	3300021488	Hydrothermal Vent Sediment	MTYIREIAIAGIVILEAIALMKGIDGQVLSLVIATIAGIAGYTLRKIREE
Ga0190305_10194912	3300021488	Hydrothermal Vent Sediment	VSYIREVAIAGIVVLEAIALCKGIDGALLSMVIATIAGIAGYTLKRVREE
Ga0190305_10224492	3300021488	Hydrothermal Vent Sediment	MDYVREVAIAGLVILEAIALFNGIDGQVLSLVIATIAGIAGYTLRKVKEA
Ga0190305_10390002	3300021488	Hydrothermal Vent Sediment	MDYVREVAIAGLVILEAIALFNGIDGQVLSLVIATIAGIAGYTLRKVKEG
Ga0190305_10441061	3300021488	Hydrothermal Vent Sediment	MSYIKEVAIAGIVILEAIALYKGIDGQILSLVIATIAGVAGYTLRKVREE
Ga0190305_10480762	3300021488	Hydrothermal Vent Sediment	MEYIREVAIAGLVILEAIALLEGIDGQVLSLVIATIAGIAGYTLRKVKEA
Ga0190336_100021814	3300021492	Hydrothermal Vent Sediment	MEYIREVAIVGIVVLEAIALCKGIDGAILSMVIATIAGIAGYSLRKIHEG
Ga0190306_10063173	3300021493	Hydrothermal Vent Sediment	MDYVREVAIAGLVILEAIALFNGIDGQVLSLVIATIAGIAGYTLRRVKEG
Ga0190306_10114663	3300021493	Hydrothermal Vent Sediment	MQYIREVAIAGIVVLEAIALMKGIDGQILSLVIATIAGIAGYTLRRVRED
Ga0190306_10237493	3300021493	Hydrothermal Vent Sediment	VAYIREVAIAGIVVLEAIALCKGIDGALLSMVIATIAGIAGYT
Ga0190306_10283481	3300021493	Hydrothermal Vent Sediment	MNYIREVAIAGIVILEAIALCKGIDGALFSMVIATIAGIAGYTLKKVRE
Ga0190306_10678962	3300021493	Hydrothermal Vent Sediment	MGVICMNSYIREVAIVGIVILEAIALCKGIDGQIFSLVIATIAGIAGYALRRIRE
Ga0190352_100122913	3300021495	Hydrothermal Vent Microbial Mat	VSYIREVAIAGIVVLEAIALCRGIDGALLSMVIATIAGIAGYTLKRVREE
Ga0190352_10652791	3300021495	Hydrothermal Vent Microbial Mat	VSYIREVAIAGIVVLEAIALCKGIDGAILSMVIATIA
Ga0190307_10768292	3300021502	Hydrothermal Vent Sediment	VSYIREVAIAGIVVLEAIALLQGIDGALLSMVIATIAGIAGYT
Ga0190316_100069315	3300021507	Hydrothermal Vent Sediment	MQYVREVAIAGIVILEAIALCKGIDGQILSLVIATIAGIAGYTLRKIRED
Ga0190316_10007457	3300021507	Hydrothermal Vent Sediment	MSYIREVAILGIVVLEAIALYKGIDGQILSLVIATIAGIAGYTLRRVRED
Ga0190316_100075311	3300021507	Hydrothermal Vent Sediment	MEYIREVAIAGIVILEAIALYKGIDGQVLSLVIATIAGIAGYTLRRIRED
Ga0190316_10012486	3300021507	Hydrothermal Vent Sediment	VVTIGYIREVAIAGIVVLEAIALCKGIDGAILSMVIATIAGIAGYTLKRVREE
Ga0190316_10021463	3300021507	Hydrothermal Vent Sediment	MTYIREIAIAGIVMLECVALCKGIDGQILSLVIATIAGIAGYTLRKVREE
Ga0190316_10045044	3300021507	Hydrothermal Vent Sediment	MEYIREVAIAGIVILEAIALMKGIDGQVLSLVIATIAGIAGYTLRRIRED
Ga0190316_10152284	3300021507	Hydrothermal Vent Sediment	MAYIREVAITGIVVLEAIALYKGIDGQVLSLVIATIAGIAGYTLRRIRED
Ga0190316_10195063	3300021507	Hydrothermal Vent Sediment	MEYIREVAIAGLVILEAIALLKGIDGQVLSLVIATIAGIAGYTLRKVKEA
Ga0190316_10346662	3300021507	Hydrothermal Vent Sediment	MQYVREVAIAGIVILEAIALCKGIDGQILSLVIATIAGIAGYTLRRVRED
Ga0190316_10422943	3300021507	Hydrothermal Vent Sediment	MQYVREIAIAGIVLLEAIALMKGIDGQVLSLVIATIAGIAGYTLRKIREE
Ga0190304_100159415	3300021509	Hydrothermal Vent Sediment	MNSYIREVAIVGIVILEAIALCKGIDGQIFSLVIATIAGIAGYALRRIRED
Ga0190304_10035334	3300021509	Hydrothermal Vent Sediment	MSYIREVAIAGIVILESVALMKGIDGQVLSLVIATIAGIAGYTLRRVRED
Ga0190304_10116213	3300021509	Hydrothermal Vent Sediment	MDYVREVAIAGLVILEAIALLKGIDGQVLSLVIATIAGIAGYTLRRVKEA
Ga0190304_10132525	3300021509	Hydrothermal Vent Sediment	MSYIREVAIAGIVILEAIALYKGIDGQILSLVIATIAGIAGYTLRRVRED
Ga0190304_10215662	3300021509	Hydrothermal Vent Sediment	MNYIREVAIAGIVILEAIALYKGIDGQILSLVIATIAGIAGYTLRRVRED
Ga0190304_10419423	3300021509	Hydrothermal Vent Sediment	MSYIRETAIAGIVILEAIALYKGIDGQILSLVIATIAGIAGYTLRKIRED
Ga0190304_10715082	3300021509	Hydrothermal Vent Sediment	MTYIREVAIAGIVILEAIALCKGIDGQVLSLVIATIAGIAGYTLRKVREE
Ga0190304_10821902	3300021509	Hydrothermal Vent Sediment	MEYIREVAIAGIVILEAIALHKGIDGQILSLVIATIAGIAGYTLRKVREE
Ga0190304_10874011	3300021509	Hydrothermal Vent Sediment	MDYVREVAIAGLVILEAIALFNGIDGQVLSLVIATIAGIAGYTFRKVKEA
Ga0190303_10049885	3300021512	Hydrothermal Vent Sediment	VVDVSYIREVAIAGIVVLEAIALLQGIDGALLSMVIATIAGIAGYTLKKIKEG
Ga0190303_10181721	3300021512	Hydrothermal Vent Sediment	VIDVGYIREVAIAGIVVLEAIALCRGIDGALLSMVIATIAGIAGYTLKRVREE
Ga0190303_10393473	3300021512	Hydrothermal Vent Sediment	SYIREVAIAGIVILESVALMKGIDGQVLSLVIATIAGIAGYTLRRVRED
Ga0190315_10013447	3300021513	Hydrothermal Vent Sediment	MNFIREVAIVGIVILEAIALCKGIDGQILSLVIATIAGIAGYTLRKIREE
Ga0190315_10117533	3300021513	Hydrothermal Vent Sediment	MEYIREVAIVGIVVLEAIALMKGIDGQVLSLVIATIAGIAGYTLRRIRED
Ga0190362_10005653	3300021592	Hydrothermal Vent Microbial Mat	MDYVREVAIAGLVILEVIALLQGIDGQVLSLVIATIAGIAGYTLRRVKEA
Ga0190362_10246582	3300021592	Hydrothermal Vent Microbial Mat	MEYIREVAIAGLVILEAIALLQGIDGQVLSLVIATIAGIAGYTLRKVKEA
Ga0190286_10023503	3300024423	Hydrothermal Vent Microbial Mat	MTYIREIAIAGLVILEITALIKGIDGMLFGTVIAVIAGLAGYTIKVVKER
Ga0190286_10078595	3300024423	Hydrothermal Vent Microbial Mat	MTSYIREVAIVGLVVLEAIALMKGIDGTLLSVVIAVIAGLAGYTVRRVRE
Ga0209834_100859341	3300025156	Marine Hydrothermal Vent	VAIAGLVILEAIALLQGIDGQVLSLVIATIAGIAGYTLRKVKEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096387

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences