Sample 3300021592

3300021592: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-5-6_MG

Overview

Basic Information
IMG/M Taxon OID	3300021592 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0215287 \| Ga0190362
Sample Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-5-6_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	93872894
Sequencing Scaffolds	27
Novel Protein Genes	35
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
All Organisms → cellular organisms → Bacteria	9
All Organisms → Viruses → Predicted Viral	1
Not Available	6
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	N/A	Depth (m)	2011
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033663	Metagenome	176	Y
F036512	Metagenome	169	N
F038026	Metagenome	166	Y
F048033	Metagenome	148	N
F050821	Metagenome	144	N
F056227	Metagenome	137	N
F059532	Metagenome	133	N
F062402	Metagenome	130	Y
F069552	Metagenome	123	N
F076704	Metagenome	117	N
F084956	Metagenome	111	N
F088030	Metagenome	109	N
F094688	Metagenome	105	N
F096387	Metagenome	104	Y
F096389	Metagenome	104	Y
F102257	Metagenome	101	N
F105221	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0190362_1000565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4847	Open in IMG/M
Ga0190362_1001467	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2953	Open in IMG/M
Ga0190362_1002555	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	2196	Open in IMG/M
Ga0190362_1004264	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
Ga0190362_1004284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1690	Open in IMG/M
Ga0190362_1004470	All Organisms → Viruses → Predicted Viral	1652	Open in IMG/M
Ga0190362_1004972	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
Ga0190362_1005839	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
Ga0190362_1007367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1283	Open in IMG/M
Ga0190362_1007587	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
Ga0190362_1009369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1132	Open in IMG/M
Ga0190362_1009383	Not Available	1132	Open in IMG/M
Ga0190362_1012073	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
Ga0190362_1013415	Not Available	941	Open in IMG/M
Ga0190362_1013773	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
Ga0190362_1015884	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
Ga0190362_1016552	Not Available	849	Open in IMG/M
Ga0190362_1016627	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	847	Open in IMG/M
Ga0190362_1017277	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
Ga0190362_1020931	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
Ga0190362_1023360	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon	713	Open in IMG/M
Ga0190362_1023862	Not Available	706	Open in IMG/M
Ga0190362_1024658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	694	Open in IMG/M
Ga0190362_1026092	Not Available	675	Open in IMG/M
Ga0190362_1039149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	549	Open in IMG/M
Ga0190362_1042553	Not Available	526	Open in IMG/M
Ga0190362_1046270	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190362_1000565	Ga0190362_10005653	F096387	MDYVREVAIAGLVILEVIALLQGIDGQVLSLVIATIAGIAGYTLRRVKEA
Ga0190362_1000565	Ga0190362_10005656	F105221	MKYYKGFEHTNSTDEEETIVTLTSTEVQKKTLKQVVITHRLSNDTLLTAYIEREKVIDNIRIEASPFNDKPYVFDSDIEIPPGEMFTLTLKNQSAGSNGGVIGYLEYEIAE
Ga0190362_1001467	Ga0190362_10014673	F105221	MVKYIKGFEHTNSSDDEESVVTLTSTEEEKKKINAVVITHRLSNDTLLIAYLEREKIIDNARIEASPVGNDPYRFNVDIGIPPGETFTVMLKNQSAGSNGGVVGYLEYEITG
Ga0190362_1002555	Ga0190362_10025552	F088030	MDTTYRIRLIVAVAVASVALTIAVAGIASASPPVPPPNETSLIETSAVVTVYSGSYYEEESFDWTYSTKELNDTLENDERVAQIRYDEHTSATDGYTEFKKEFTADGQNTPNLEVDKKIGFIAGTAVTSSLDSTENVGMTIVTEGDTAGGTGVGALCVWAQDACIPPTNELVAAGSQLKDVTLVNSHTISTVQTTESPQLHHEITAGGPTVEGVNMTAGMGTVAAGMKVSAMEGLNCNETHPLASRLTYSELSRATGAWDFMKSMTYTAQIPAISVPSQYPIFPWP
Ga0190362_1003300	Ga0190362_10033001	F096389	MVENASIITFGNNASAMVISYECDYRTGNVPIDVLGRNRNDYQDLGLFPTEHHFTLFAENNSQYRNLLQELYKHEEIEFGYNESTKFYGVPTRIHKHPMRAGKIKDLYIVDVDVLSTDPLRYGKKFEATRSLAGESGSFNLPAVIGDTKTPISLHFDIYDVNRKTVTGYDSGSYLLFGRKDQLGFDHLYEHYIAIPRWRDFWINYDWWNNYILPPFNLTSGTVSCGSKTEKWEWGIHSVRWSFNYPYVIQCLWLNDDYFYDFPKTDTAFTYIPSFCPVDFSIQTERL
Ga0190362_1004264	Ga0190362_10042645	F048033	MIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEKLTDDMQKLIKNFRNAGKTIEYMDKDHYDVYK
Ga0190362_1004284	Ga0190362_10042841	F056227	MEDKDTQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHGLEYLYVKYPQENREEVKVPSTDYRDVDIDLRIKIGSESTIKYSC
Ga0190362_1004284	Ga0190362_10042842	F059532	MRNILLLGDLHCGSTEGLWHPDFVTREGQRIKLSPLQEELYEKWLLLRERLPDYEAVFLLGDITHGLGSKEFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEILHAKFGGAISNVRLKGTDVVINIAHGIGSRPVYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSIDNDNNVYVKPSLFKLKSERKNICVL
Ga0190362_1004470	Ga0190362_10044702	F102257	MGYYVSNIIGIRTGGVFSGEKDVDDIKQRIKKIVLEMREESEKKRGEVFEPDLGWQDGDPSHCMCDKELVGSKGSYVVLAGVFNYWTFEKVEQFAKRLSKEFGTHVMLMSWDEEHDIIKSDVYLGGKSIREVNEDPISSAFRRIV
Ga0190362_1004972	Ga0190362_10049721	F084956	MRRKRTRAICGIAICGYTICGDTSYYLPTVASSDIKGVAQVTTPDGWFTYFFPLVRAEVILNQPFTDDSATITIVHNGQLLLDSDVSIHLGKGLKKVVFMGKIKSEAQRTIMGKGNIMSELNCVSRFDELAHRYLKEGDQKDYHGTLSEVIQQFIAVAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITNINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPIFGRVRVNLPGITKILELKSLRYTLDENGLFTTLY
Ga0190362_1005839	Ga0190362_10058394	F033663	MDACFEDREKVVLIYTMHQENITQVYGIRCKVEDDKIQDWDYDSLTNITFLYKQRRVLFNDIQEDGMAVPEFFFEVKRDVSILRDLVSGKFNILLVIEEEK
Ga0190362_1007367	Ga0190362_10073675	F038026	MLKFMIDRYGNEYLLIIEYEDRAERLIVKNLKDLLQVIADTTLYNFEYKSKYFEQSNYAKIEILWNNE
Ga0190362_1007587	Ga0190362_10075871	F094688	IEYLPNASYIGILVQLKEELLNAGTLPGVELYNMASATTLEICGGEIEVDTRIYGKQKETAQYIRATYSGKSILKEYSQIETLRVVEIHDELEPYRITRLQGPWIQGHYELNAKVGDKFMFDPFENIHNSYYEKSGSVSISSSLVDLGSGSITYLISPNLPIIEVPTLYLEGSVSHIYVSGENEDFYEVSYISNHTGHLGTSEIDLRGRERFFLKLQGGSFSALHVGCGLGSVYNPLPWAVPNGPTTYYYSKDKNIDVDLHVEYRAAYYT
Ga0190362_1008672	Ga0190362_10086722	F088030	TFDWTYSTKELNDTLENDERVAQIQYDAHTSATDGYFEIKKGLTADGQNTPNLKVDAKVGFVKGNAVTSSLDLTENVGMSNVAEGDTAGGTGVGALCPWAQNACIPPTNTFVAAGSQLKDVTLVNSHTITTVATTESPQVHHEITAKGPIVEGGNETMGMGTIAAGMKVSTMEGLNCNRSHPLASRLTYSELSTATGAWKFIKSMTHTAQIPVINEPNTYPMFPF
Ga0190362_1009369	Ga0190362_10093692	F038026	MLKFMIDKNEDEYILIIEYEDRAERLLASSLKDLVQAMADTTLYNFEGKSKYFEESYHVKIEIM
Ga0190362_1009383	Ga0190362_10093831	F062402	ASSLMMVYWFSRLRLAIAERGWKYTAWLGALPWVLVLFNSAHVLLRELTCIQKGGTVDIALLYILAAVDWVILATVGIGIILDAIIRHADLQRNKKTQKIND
Ga0190362_1012073	Ga0190362_10120733	F036512	RGIIKMYWKVPNYLKRYIRIQDVLKNIFKPCDCGEELKKCIKDKEYFAKRAETLSRALAKSINLPEPPNPSKEMEEVNPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWRENVADCDDYALLMASFVAGVFAKPYYDKQVAFAITWSRSHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190362_1013415	Ga0190362_10134152	F050821	MIVKDMYCDYCKQETLHECQSNELWRCVQCQNTRFEIINIPQNEIDWEKPVRYLWRSGDIAYVTSALAPIILRLDEMKELLEGRRIRIPLFKIKDKFLPKYY
Ga0190362_1013773	Ga0190362_10137731	F094688	YVRAAHSGKSILKEYSQIETLRVIEIHDELEPYRITRLQGPWIQGHYELNAKVSDKFTFDPFENIYNSYYEKMGEVSISSSLVNLGSGSITYLISPNLPIIEVPTLYLEGSVSHIYVSGENESFYEISYISNLTGFIGSSEIDIRGRERFFLKLQGGSFSALHIGCDLGSVYNPLPWATPNGPTTYYYSKDKNIDVDLHVEYRAAYYT
Ga0190362_1013843	Ga0190362_10138432	F096389	MVNNASVIMFGTNASAMVISYECDYRTGNVPIDVLGRNRNDYQDLGLFPTEHHFTLFAENNSQYRNLLQELYKHEEIEFGYNESTKFYGVPTHIHKHPMRAGKIKDLYIVDVDVLSTDPLRYGKKFEATRSLTGKSGSFNLPAVIGDTKTPISLHFDIYDVNRKTVTGYDSGSYLLFGRKDQLGFDHLYEHYIAIPRWRDFWENYDWHNNYILPPLNLTSGTIPCASKTVKWEWGIHPSRFS
Ga0190362_1015884	Ga0190362_10158842	F036512	PCDYGEELKKCIKDKEYFAKRAETLSRALAKSINLPEPPDPSKEMEEVNPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSSIQTQVEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190362_1016552	Ga0190362_10165522	F050821	MIVKEMYCDYCKQETFHECQSNELWRCIQCQNTRFEIINIPQNEIDWERPVRYLWRSGDIAYVTLALAPNVLRLDEMKELLEGKRLRVPLFKIKDKFLPKYY
Ga0190362_1016627	Ga0190362_10166271	F088030	YYEEETFDWTYSTKELNDTLENDERVAQIRYDERTSATDGYFEIKKGFTADGQNTPNLKVDKKIGFIAGTAVTSSLDSTENTGMTIVSEGDTAGGTGVPALCPWAQGACIPPTNELVAAGSQLKDVTLVNSHTITTVQTTESPQLHHEITAGGPTVEGGNMTAGMGTVAAGMKVSTMEGLNCNSTHPLASRLTYSELSRATGMWDFYKSMTYTAQIPAINLPSQYPIFPWP
Ga0190362_1017277	Ga0190362_10172771	F094688	QLKEELLNAGTLPGVELYNMPNAKTLEICGGEIEVDTRIYGKQKETAQYIRATHSGKSILKEYSQIETLRVIEIHDELEPYRITRLQGPWIQGRYGLNAKVSDKFTFNPFENIHNSYYEKSGDISISSSLVDLGSGSITYLISPNLPIIEVPTLYLEGSVSHIYVSGENESFYEVSYTSNHTGFIGSSEIDLRGRERFFLKLQGGSFSALHIGCDLGSVYNPLPWAIPNGPTTYYYLKDKNIDIDLHVEYRAAYYT
Ga0190362_1020931	Ga0190362_10209311	F033663	MLLKGDWEIIEQESLDENVTQVYGIRCKVEDDKIQDWDYNSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDVSILRDLVLGKFNILLVIEEEK
Ga0190362_1023360	Ga0190362_10233602	F076704	MPEYGAVKGWSNRIRIGLESAPNESIWHDGRDPLLNSLSMDTSVDIDKIYVVGSRDAVSMIEGTQEVTGSLERNLYSKNATYNEFIYAGNNSFLDLLTATGMYGESLQSCKILMNTTSNSPTADYNRVIYGVKFHSYR
Ga0190362_1023862	Ga0190362_10238621	F102257	YVSNIIGIRTGGVFSGETDVEDVKNRIREIILKMREESEKEGSEIFDPDLGWKDGDPSHCMCEKELVGSKGSYIVLAGVFNYWSFEAAEQFAKRLSEEFGTYVMLMSWDEEQDIIKSDVYLGGKSIRENNEDPISSALRRVV
Ga0190362_1024658	Ga0190362_10246582	F096387	MEYIREVAIAGLVILEAIALLQGIDGQVLSLVIATIAGIAGYTLRKVKEA
Ga0190362_1026092	Ga0190362_10260921	F069552	ECTKPITIQLRCFECRFIFPDVPRQLVKNFQSLGRGMYSLVFALKNIDCEEEYFLNNIIETDVNSTGFGTANIEVETTIPNDEEYRRLRKLINEWYKQKVDTFSFFLGIVMYSSYRDWRRMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSKVPKFLGTHTYWD
Ga0190362_1026179	Ga0190362_10261791	F059532	LSPLQEELYEKWLLLRERLPDYEAVFLLGDITHGLGSKEFGKDVIDCDLHDQLQCGIKLLKPITKGKKVVVITGSRYHSSIDYDIDRGIAEVLHAKFGGAISNVRLKGTDVVINIAHGIGSRPVYIGTRMNQDIFNAILTEHLLKMPDVSVIVRAHFHIYSYFAIHNKHFIYIPGWNATRKGRFITRWYFRQSDIGAVLLGIDEDNNIYVRPYLFKLKSERKNI
Ga0190362_1026262	Ga0190362_10262621	F096389	HHFTLYAENDSQYRNLLRELYKHEEIEFGYNESTKYYGVPTHIHKHPMRAGKIKDLYIVDVDILSTDPLRYGQKFEATRSLTGESGSFNLPAVIGDTKTPISLHFDVYNANRKTVTGSDSGSYLLFGRKDQLGFDHFYEHYVAIPRWRDFWDNYDWWNNYILPPLNLTSGTISCGSKTVKWEWGVHRTWWKFNHPYVIQCLWLKDDYFYDFPKTDTASTYIPCT
Ga0190362_1029311	Ga0190362_10293111	F059532	LYDKWLLLQEKLPDYEAVFLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKETDVVINIAHGIGSRPIYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHYIYIPGWNTIRKGRFVTRWYFRQPDIGAVLLSIDNDNNVYVKPYLFKLK
Ga0190362_1039149	Ga0190362_10391491	F056227	MEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHGLEYLYVKYPQENREEVKIPSTENYRDVNIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190362_1042553	Ga0190362_10425531	F069552	MKKNSIAWFVVECTKPITIQLRCFECRIIFPDVPRQLVKNFQSLGRGVYSLAFALKNIDCEEEYFLNNIVEVDINSTGFGKAGVEVETTIPNDEEYQRLRKLINDWYKQKVDTFSFFLGIVMYSSYRDWRRMKEIGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSEPPKF
Ga0190362_1046270	Ga0190362_10462701	F076704	PEYGAVKGWSNRIRIGLESAPNESIWHDGRDPLLNSLTMDTSVDIDKIYVVGSRDAVSMIEGTQEVTGSLERNLYSKNATYNEFIYAGNNSFLDLLAATGMYGESLQSCKILMNTTSNSASADYNRVIYGVKFHSYRTSTAAGDMVTESVDYDATNISTH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021592: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-5-6_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences