Basic Information | |
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Family ID | F097964 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 49 residues |
Representative Sequence | IVERIALAHDALRARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA |
Number of Associated Samples | 98 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 96 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.33 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (4.808 % of family members) |
Environment Ontology (ENVO) | Unclassified (26.923 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (35.577 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 50.63% β-sheet: 0.00% Coil/Unstructured: 49.37% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.33 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 104 Family Scaffolds |
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PF05974 | DUF892 | 27.88 |
PF00905 | Transpeptidase | 19.23 |
PF03462 | PCRF | 8.65 |
PF17092 | PCB_OB | 7.69 |
PF01520 | Amidase_3 | 1.92 |
PF00239 | Resolvase | 0.96 |
PF11741 | AMIN | 0.96 |
PF01551 | Peptidase_M23 | 0.96 |
PF00575 | S1 | 0.96 |
PF00378 | ECH_1 | 0.96 |
PF13924 | Lipocalin_5 | 0.96 |
PF13520 | AA_permease_2 | 0.96 |
COG ID | Name | Functional Category | % Frequency in 104 Family Scaffolds |
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COG3685 | Ferritin-like metal-binding protein YciE | Inorganic ion transport and metabolism [P] | 27.88 |
COG0216 | Protein chain release factor RF1 | Translation, ribosomal structure and biogenesis [J] | 8.65 |
COG1186 | Protein chain release factor PrfB | Translation, ribosomal structure and biogenesis [J] | 8.65 |
COG0860 | N-acetylmuramoyl-L-alanine amidase | Cell wall/membrane/envelope biogenesis [M] | 1.92 |
COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | Replication, recombination and repair [L] | 0.96 |
COG2452 | Predicted site-specific integrase-resolvase | Mobilome: prophages, transposons [X] | 0.96 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 100.00 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.81% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 4.81% |
Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 3.85% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 3.85% |
Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 3.85% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.85% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 3.85% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.88% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.88% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.88% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.88% |
Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 2.88% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.88% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.92% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil | 1.92% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 1.92% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 1.92% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.92% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.92% |
Soil | Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil | 1.92% |
Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.92% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.92% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.92% |
Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 1.92% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.92% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 1.92% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 0.96% |
Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 0.96% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.96% |
Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 0.96% |
Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 0.96% |
Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 0.96% |
Sediment (Intertidal) | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) | 0.96% |
Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.96% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.96% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.96% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.96% |
Sugarcane Root And Bulk Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil | 0.96% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.96% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.96% |
Rice Paddy Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil | 0.96% |
Permafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil | 0.96% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.96% |
Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.96% |
Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.96% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.96% |
Sandy Soil | Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil | 0.96% |
Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.96% |
Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 0.96% |
Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 0.96% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.96% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.96% |
Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 0.96% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.96% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.96% |
Switchgrass, Maize And Mischanthus Litter | Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter | 0.96% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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2124908032 | Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all | Environmental | Open in IMG/M |
2140918006 | Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1 | Environmental | Open in IMG/M |
2170459019 | Litter degradation MG4 | Engineered | Open in IMG/M |
3300000044 | Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old | Host-Associated | Open in IMG/M |
3300000580 | Forest soil microbial communities from Amazon forest - 2010 replicate II A01 | Environmental | Open in IMG/M |
3300003321 | Sugarcane bulk soil Sample H1 | Environmental | Open in IMG/M |
3300004055 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2 | Environmental | Open in IMG/M |
3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Environmental | Open in IMG/M |
3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
3300005833 | Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK | Environmental | Open in IMG/M |
3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Host-Associated | Open in IMG/M |
3300005874 | Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 | Environmental | Open in IMG/M |
3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Host-Associated | Open in IMG/M |
3300005980 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 | Environmental | Open in IMG/M |
3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
3300006172 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 | Environmental | Open in IMG/M |
3300006606 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300006846 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Host-Associated | Open in IMG/M |
3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
3300009029 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189 | Environmental | Open in IMG/M |
3300009153 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 | Environmental | Open in IMG/M |
3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
3300009660 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058 | Environmental | Open in IMG/M |
3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
3300011000 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015 | Environmental | Open in IMG/M |
3300011427 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2 | Environmental | Open in IMG/M |
3300012207 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG | Environmental | Open in IMG/M |
3300012351 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG | Environmental | Open in IMG/M |
3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
3300012904 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1 | Environmental | Open in IMG/M |
3300012941 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015 | Environmental | Open in IMG/M |
3300012948 | Tropical forest soil microbial communities from Panama - MetaG Plot_14 | Environmental | Open in IMG/M |
3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
3300014256 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D2 | Environmental | Open in IMG/M |
3300014322 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1 | Environmental | Open in IMG/M |
3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Host-Associated | Open in IMG/M |
3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
3300018029 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG | Environmental | Open in IMG/M |
3300018032 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG | Environmental | Open in IMG/M |
3300018057 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150 | Environmental | Open in IMG/M |
3300018060 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG | Environmental | Open in IMG/M |
3300018072 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2 | Environmental | Open in IMG/M |
3300020001 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2 | Environmental | Open in IMG/M |
3300021082 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo | Environmental | Open in IMG/M |
3300022850 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5 | Environmental | Open in IMG/M |
3300022898 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5 | Environmental | Open in IMG/M |
3300023062 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4 | Environmental | Open in IMG/M |
3300023266 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4 | Environmental | Open in IMG/M |
3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025482 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes) | Environmental | Open in IMG/M |
3300025619 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes) | Environmental | Open in IMG/M |
3300025829 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes) | Environmental | Open in IMG/M |
3300025891 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes) | Environmental | Open in IMG/M |
3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) | Environmental | Open in IMG/M |
3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026054 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1 (SPAdes) | Environmental | Open in IMG/M |
3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026743 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-10 (SPAdes) | Environmental | Open in IMG/M |
3300026887 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes) | Environmental | Open in IMG/M |
3300027371 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027482 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2w-12 (SPAdes) | Environmental | Open in IMG/M |
3300027667 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027787 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes) | Environmental | Open in IMG/M |
3300027898 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) | Environmental | Open in IMG/M |
3300028708 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152 | Environmental | Open in IMG/M |
3300031150 (restricted) | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4 | Environmental | Open in IMG/M |
3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Host-Associated | Open in IMG/M |
3300031274 | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30 | Environmental | Open in IMG/M |
3300031547 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4 | Environmental | Open in IMG/M |
3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
3300031996 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2 | Environmental | Open in IMG/M |
3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
3300032091 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 | Environmental | Open in IMG/M |
3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
3300033480 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B | Environmental | Open in IMG/M |
3300033513 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C | Environmental | Open in IMG/M |
3300034268 | Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2 | Environmental | Open in IMG/M |
3300034354 | Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
Perma_A_C_01385150 | 2124908032 | Soil | PVLQRVALAHHALAARLVAPETGVLRLFVQLGEAAGRGVDVKDASSAAAATA |
P1_C_00761980 | 2140918006 | Soil | RVALAHHALAARLVAPETGVLRLFVQLGEAAGRGVDVKDASSAAAATA |
4MG_01384840 | 2170459019 | Switchgrass, Maize And Mischanthus Litter | RELILELLLDTANRLELIVQRVTLAHHALRPHLIVPEIGAFRFFVQFGEASGRGVDVKDASSAAARTA |
ARSoilOldRDRAFT_0133972 | 3300000044 | Arabidopsis Rhizosphere | VERIALAHDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA* |
AF_2010_repII_A01DRAFT_10657871 | 3300000580 | Forest Soil | THDPLCARLIVPEIGIFRLFIQFGEAPRRGVDIKDASSAAAQTA* |
soilH1_101342212 | 3300003321 | Sugarcane Root And Bulk Soil | LRAGLIAPEIGVFGFSVQFGETPLRGIDVKDASSAAAPTA* |
Ga0055480_101868482 | 3300004055 | Natural And Restored Wetlands | HPLGARLIVPEVGILGRLVQFGEAPLRGFDVKDASSAVRATA* |
Ga0062589_1019049712 | 3300004156 | Soil | ADRLELILQRVTFAHHALRPCLVVPEIGIFRFFVQFGEASGRGIDVKDASSAAARTA* |
Ga0070688_1001997093 | 3300005365 | Switchgrass Rhizosphere | LELIVERIALAHDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA* |
Ga0070706_1003465071 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | LIFELLLDMADRLELILQRVTFAHHALRPRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA* |
Ga0066905_1009712242 | 3300005713 | Tropical Forest Soil | LELIVQCVALAHNALRARLIVPEIGVFRFFVQFGEAPRRGIDVKDASSAAARTA* |
Ga0074472_107891351 | 3300005833 | Sediment (Intertidal) | HALGARLVIPQIGVFGFFVQFGEAARRGIDVKDASSAAAPTA* |
Ga0068851_103812572 | 3300005834 | Corn Rhizosphere | VERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA* |
Ga0075288_10407841 | 3300005874 | Rice Paddy Soil | QRVALAHHALAARLIAPQRGVFGFFVQFGEAARRGFDVKDASSAAATTA* |
Ga0081455_109193991 | 3300005937 | Tabebuia Heterophylla Rhizosphere | LVVPEVGVLGLLIQLGEADLCLVDVKDASSAVRATA* |
Ga0066798_100802611 | 3300005980 | Soil | ELLLDAADGVELIVQRVALAHGALGARRIAPEIGGFSRFVQLGKAALRGIDVKDASSAVVPTA* |
Ga0075026_1003282602 | 3300006057 | Watersheds | KLLLDAADGLKLVVERITLAHHTLRSYLIVPEIGVFRLLVQLGKAPRRGVDVKDASSAAALTA* |
Ga0075018_106310961 | 3300006172 | Watersheds | LNATDGFKLIVERIALTHNALSTGLVVPEIGVFRLFVQFGEALRRGIDVKDASSAAALTA |
Ga0074062_117945791 | 3300006606 | Soil | IAFTHNTLRAGLVVPEIRVFRLSIQFSEALRRGVDVKDASSAAARTA* |
Ga0075430_1000771053 | 3300006846 | Populus Rhizosphere | VPEFGIFGLLVQLGQTHLRGIDVKDASSAAQGTA* |
Ga0075434_1001257133 | 3300006871 | Populus Rhizosphere | DALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA* |
Ga0075434_1018929422 | 3300006871 | Populus Rhizosphere | DALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA* |
Ga0075426_104392331 | 3300006903 | Populus Rhizosphere | LRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAA |
Ga0066793_104864011 | 3300009029 | Prmafrost Soil | DGVELIVQRVALAHGALGARRIAPEIGGFSRFVQLGKAALRGIDVKDASSAVVPTA* |
Ga0105094_107678211 | 3300009153 | Freshwater Sediment | FAHDALRARLVVPQIGVFRFLVQLGETPRRGIDVKDASSAAVPTA* |
Ga0105248_126559481 | 3300009177 | Switchgrass Rhizosphere | DGLELIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA* |
Ga0105237_111113111 | 3300009545 | Corn Rhizosphere | HDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA* |
Ga0105237_126391421 | 3300009545 | Corn Rhizosphere | HDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA* |
Ga0105854_11242091 | 3300009660 | Permafrost Soil | SVALAHGALGLGLVVPECGVFSRLVQFGEAARRSIDVKDASSAGRSTA* |
Ga0126384_101259401 | 3300010046 | Tropical Forest Soil | IVPEIGVFRLFIQLGKATRSGINVKDASSAAAPTA* |
Ga0126373_118930262 | 3300010048 | Tropical Forest Soil | PRLIVPEIGVFRFFIQLGKATRSGINVKDASSAAVPTA* |
Ga0126377_122496861 | 3300010362 | Tropical Forest Soil | DTANRFELVVQRVPLAHHALRARLIVPQIRVFRILVQLCEASGRGVDVKDASSAAGLTA* |
Ga0126383_134902311 | 3300010398 | Tropical Forest Soil | LLDSANGLKLVIERVAFAHDTLRASLIVPEIGIFRFLIQFGKAAHRSVDVKDASSAA* |
Ga0134127_102447962 | 3300010399 | Terrestrial Soil | FELLLDMADRLELILQRVTFAHHALRPRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA* |
Ga0138513_1000686462 | 3300011000 | Soil | PHDALRTRLIVPEIGIFRLFVQFGQTPRRSVNVKDASLAAAPTA* |
Ga0137448_10972591 | 3300011427 | Soil | QRVALTHGALGTRLIVPQIGVFGFFVQFGEAARRGIDVKDASSAVVSTA* |
Ga0137381_115545022 | 3300012207 | Vadose Zone Soil | AHNTLRTRLIAPEVGIFGLFIQLCEAPGRGIDVKDASSAAESTA* |
Ga0137386_112188591 | 3300012351 | Vadose Zone Soil | LVVKRIALAHNTLRTRLIAPEVGIFGLFIQLCEAPGRGIDVKDASSAAES |
Ga0150984_1092668531 | 3300012469 | Avena Fatua Rhizosphere | LRARLVVPEIGVFGFFIQFGETPLRGIDVKDASSAAAPTA* |
Ga0157282_100032051 | 3300012904 | Soil | DMADRLELILQRVTFAHHALRPRLIVPEIGVSRFLVQFGEASRRGVDVKDASSAAARTA* |
Ga0162652_1000375142 | 3300012941 | Soil | ALRTRLIVPEIGIFRLFVQFGQTPRRSVNVKDASLAAAPTA* |
Ga0126375_112778191 | 3300012948 | Tropical Forest Soil | LLDAADGFQLIVERITLAHDTLRPRSIVPKIGVFRVFIQLGKATRSAINVKDASSAAVPTA* |
Ga0157374_108017342 | 3300013296 | Miscanthus Rhizosphere | LIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA* |
Ga0075318_10792731 | 3300014256 | Natural And Restored Wetlands | HHPLGARLVAPQRGILGLFVQLGQAPFRGIDVKDASSAARATA* |
Ga0075355_12616421 | 3300014322 | Natural And Restored Wetlands | DGLELVFQCVALAHGALGARLVAPEARIFGGFVQFGETPLRGIDVKDASSAVAPTA* |
Ga0157380_102157803 | 3300014326 | Switchgrass Rhizosphere | LIVERIALAHDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA* |
Ga0182008_100925962 | 3300014497 | Rhizosphere | VLRARLIVPEIGIFGFFIQFGETPLRCIDVKDASSAAAPTA* |
Ga0182008_102826741 | 3300014497 | Rhizosphere | LELLLDASDRFKLIVERVTFAHHALSPRLIIPEVGVFRFLVQFGEASRRSVDVKDASSAAARTA* |
Ga0157379_118376712 | 3300014968 | Switchgrass Rhizosphere | SADGLELIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA* |
Ga0157376_123995001 | 3300014969 | Miscanthus Rhizosphere | IVERIALAHDALRARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA* |
Ga0157376_124809992 | 3300014969 | Miscanthus Rhizosphere | LIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA* |
Ga0132258_115041661 | 3300015371 | Arabidopsis Rhizosphere | LRPHLIVPEIGVFGFFVQFGEASGRGVDVKDASSAAA |
Ga0132256_1030084261 | 3300015372 | Arabidopsis Rhizosphere | RLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA* |
Ga0132257_1009035441 | 3300015373 | Arabidopsis Rhizosphere | LIVQRITLAHHVLRARLIVPEIGVFRFLVQFGEASRRGVDVKDASSAAARTA |
Ga0132255_1006178022 | 3300015374 | Arabidopsis Rhizosphere | LELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA* |
Ga0132255_1055617411 | 3300015374 | Arabidopsis Rhizosphere | IVERIALAHDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA* |
Ga0187787_100450602 | 3300018029 | Tropical Peatland | AADGLKLLVERITLAHYTLRSCLIVPEVGVFRLLVQLGKAPRRSVDVKDASSAAALTA |
Ga0187788_105332131 | 3300018032 | Tropical Peatland | PVLQRIALAHHALAARRIAPELGVFGLFVQLGEAALRGLDVKDASSAA |
Ga0187858_106428551 | 3300018057 | Peatland | HHALAARRIAPEIGVLGLFVQLGEAALRGVDVKDASSAVAATA |
Ga0187765_100729761 | 3300018060 | Tropical Peatland | CARLIVPQVGTFRFFVQFGEASSRGIDIKDASSAAAPTA |
Ga0187765_110786561 | 3300018060 | Tropical Peatland | LAARRIAPELGILGLFVQLGEAALRGLDVKDASSAA |
Ga0184635_100020861 | 3300018072 | Groundwater Sediment | LLFDPADCLQLIIKSVALPHDALRTRLIVPEIGIFRLFVQFGQTPRRSVNVKDASLAAAPTA |
Ga0193731_10760302 | 3300020001 | Soil | AHGALRLALIAPESGVFSRLVQFGQAARRGIDVKDASSAVQPTA |
Ga0210380_102383452 | 3300021082 | Groundwater Sediment | HDALSARLIVPEIGVFRLFIQFGKATRSGVNVKDASSAAVPTA |
Ga0224552_10061051 | 3300022850 | Soil | LVVQGVALAHGALRASLIVPECRVFGRLVQFGQAARRGIDVKDASSAGAPTA |
Ga0247745_10012193 | 3300022898 | Soil | RSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA |
Ga0247791_10028191 | 3300023062 | Soil | ELIIELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA |
Ga0247789_10011353 | 3300023266 | Soil | LILELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA |
Ga0207656_101867862 | 3300025321 | Corn Rhizosphere | VERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA |
Ga0208715_10192702 | 3300025482 | Arctic Peat Soil | DGVELIVQRVALAHGALGARRIAPEIGGFSRFVQLGKAALRGIDVKDASSAVVPTA |
Ga0207926_11282872 | 3300025619 | Arctic Peat Soil | DAADGVELIVQRVALAHGALGARRIAPEIGGFSRFVQLGKAALRGIDVKDASSAVVPTA |
Ga0209484_101698591 | 3300025829 | Arctic Peat Soil | VLQRVAFAHHALAARLVAPETGVLRLFVQLGEAAGRGVDVKDASSAAAATA |
Ga0209585_101537021 | 3300025891 | Arctic Peat Soil | LRLGLVVPESGIFGKFVQFGEAARRSIDVKDASSAARPTA |
Ga0207693_101658932 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | RIAFTHHALRARLVVPEIRVFRLSIQFSEALRRGVDVKDASSAAARTA |
Ga0207660_109834761 | 3300025917 | Corn Rhizosphere | GLVVPEIWVFGLFVQFGETPLRGIDVKDASSAAAPTA |
Ga0207687_100748871 | 3300025927 | Miscanthus Rhizosphere | RARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA |
Ga0207706_104829241 | 3300025933 | Corn Rhizosphere | RLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA |
Ga0207703_119495271 | 3300026035 | Switchgrass Rhizosphere | LELIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA |
Ga0208659_10129482 | 3300026054 | Natural And Restored Wetlands | VTLAHHALRPHLIVPEIGVFRFFVQFGETSGRGVDVKDASSAAARTA |
Ga0207641_107264892 | 3300026088 | Switchgrass Rhizosphere | DRLELILQRVTFEHHALRPRLIVPEIGVFRFLVQFGEASRRGVDVKDASSAAARTA |
Ga0207613_1014161 | 3300026743 | Soil | DALRRSRPDRLELILQRVTFAHHALRPRLIVPEIGVSRFLVQFGEASRRGVDVKDASSAAARTA |
Ga0207805_10263202 | 3300026887 | Tropical Forest Soil | RARLVAPKIGIFGLFVQLGEPARRGVDVKDASSAAALTA |
Ga0209418_10847801 | 3300027371 | Forest Soil | RLVAPEIRILGLFVQLGETLLRGIDVKDASSAAAPTA |
Ga0207460_1017802 | 3300027482 | Soil | LELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAARTA |
Ga0209009_10145401 | 3300027667 | Forest Soil | LQRVALAHHALSTRLIAPETGVFRLFVQLGEAAGRGIDVKDASSAA |
Ga0209074_101108181 | 3300027787 | Agricultural Soil | LGARLIVPKVGVFGLFVQLGEAPRRGVDIKDASSAAG |
Ga0209067_105814822 | 3300027898 | Watersheds | LAHHALAARLVAPERGILGLFVQFGETPLRGIDVKDASSAAPSTA |
Ga0307295_102587992 | 3300028708 | Soil | ESITLAHDALSARLIVPEIGVFRLFIQFGKATRSGVNVKDASSAAVPTA |
(restricted) Ga0255311_10183202 | 3300031150 | Sandy Soil | RLELILQRVTFAHHALRPRLIVPEIGVFRFFVKFGEAPRRGVDVKDASSAAARTA |
Ga0265325_102224001 | 3300031241 | Rhizosphere | AHGALRLGLVVPECGIFGEFVQFGEAARRSIDVKDASSAARLTA |
Ga0307442_11568461 | 3300031274 | Salt Marsh | RARLVVPEGGILGFFVQLGQAACRGVDVKDASSAVQATA |
Ga0310887_100159512 | 3300031547 | Soil | ILELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA |
Ga0318568_102711444 | 3300031819 | Soil | VERITLAHDALRPRLIVPKIGVFRVFIQLGKATRSGINVKDASSAAVPTA |
Ga0308176_110755311 | 3300031996 | Soil | AHGALRALRIVPEFGLLGLFVQFGEALLRDIDVKDASSAAAPTA |
Ga0318533_107182442 | 3300032059 | Soil | LLFNAADSLELIIKRIAFTHHPLRAGLIVPEIRILRFFIQFGQAARRSINVKDASSAASPTA |
Ga0318577_104073162 | 3300032091 | Soil | HYALRPRLIVPKIGVFRVFIQLGKATRSGINVKDASSAAVPTA |
Ga0307472_1000754763 | 3300032205 | Hardwood Forest Soil | LIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA |
Ga0335078_113304372 | 3300032805 | Soil | FAHHALRARLVVPEIGIFRLFVQLGEAAFRGVDVKDASSAVASTA |
Ga0335084_112830421 | 3300033004 | Soil | ALRARLVVPEIGIFRLFVQFGEALRRDVDVKDASSAA |
Ga0335077_116558071 | 3300033158 | Soil | LDTTDGAETVLQRVALPHDALRTRLIAPEMGVFGLFVQFGEAPLRGVDVKGASSAVRATA |
Ga0316620_110755482 | 3300033480 | Soil | LGARLIVPKIGILGLFVQLGQASLRGIDVKDASSAVLATA |
Ga0316628_1022641281 | 3300033513 | Soil | ARLVVPEIGVFRFLVQFGEAPRRGIDVKDASSAAAPTA |
Ga0372943_0213998_700_822 | 3300034268 | Soil | LRARLIVPEVGVFGLFVQFGETPLRGVDVKDASSAAASTA |
Ga0364943_0051805_1_168 | 3300034354 | Sediment | GFEPILQRIALAHGALGASLIVPETGVFGRLVQFGQTARRGIDVKDASSAAAPTA |
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