NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F098320

Metagenome Family F098320

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098320
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 52 residues
Representative Sequence WRGFCRPVASFLSFTSVAVQGLLGAGHLSPYTGLIESSGAVTVMSPYTVFS
Number of Associated Samples 44
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 9.62 %
% of genes near scaffold ends (potentially truncated) 93.27 %
% of genes from short scaffolds (< 2000 bps) 77.88 %
Associated GOLD sequencing projects 31
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (55.769 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil
(50.000 % of family members)
Environment Ontology (ENVO) Unclassified
(49.038 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(92.308 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 26.58%    β-sheet: 0.00%    Coil/Unstructured: 73.42%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF01934HepT-like 4.85
PF10543ORF6N 1.94
PF13091PLDc_2 1.94
PF13568OMP_b-brl_2 1.94
PF01909NTP_transf_2 1.94
PF04072LCM 1.94
PF01381HTH_3 1.94
PF01555N6_N4_Mtase 0.97
PF04471Mrr_cat 0.97
PF13432TPR_16 0.97
PF07859Abhydrolase_3 0.97
PF13602ADH_zinc_N_2 0.97
PF01209Ubie_methyltran 0.97
PF03729DUF308 0.97
PF14870PSII_BNR 0.97
PF05168HEPN 0.97
PF13749HATPase_c_4 0.97
PF13333rve_2 0.97
PF02457DAC 0.97
PF12728HTH_17 0.97
PF14279HNH_5 0.97
PF04222DUF416 0.97
PF00801PKD 0.97
PF12099DUF3575 0.97
PF13391HNH_2 0.97
PF01272GreA_GreB 0.97
PF14388DUF4419 0.97
PF13905Thioredoxin_8 0.97
PF13649Methyltransf_25 0.97
PF09603Fib_succ_major 0.97
PF07883Cupin_2 0.97
PF00857Isochorismatase 0.97
PF11185DUF2971 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG2361HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 4.85
COG2445Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 familyGeneral function prediction only [R] 4.85
COG3315O-Methyltransferase involved in polyketide biosynthesisSecondary metabolites biosynthesis, transport and catabolism [Q] 1.94
COG0657Acetyl esterase/lipaseLipid transport and metabolism [I] 0.97
COG0782Transcription elongation factor, GreA/GreB familyTranscription [K] 0.97
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.97
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.97
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.97
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.97
COG1895HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 0.97
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.97
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 0.97
COG22272-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylaseCoenzyme transport and metabolism [H] 0.97
COG2250HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 0.97
COG3068Uncharacterized conserved protein YjaG, DUF416 familyFunction unknown [S] 0.97
COG3247Acid resistance membrane protein HdeD, DUF308 familyGeneral function prediction only [R] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms55.77 %
UnclassifiedrootN/A44.23 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908028|beta3_all_NODE_100694_len_739_cov_12_090663All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium789Open in IMG/M
2124908028|beta3_all_NODE_155134_len_1127_cov_11_711624Not Available1177Open in IMG/M
2124908038|B3_all_c_ConsensusfromContig150547Not Available781Open in IMG/M
2124908038|B3_all_c_ConsensusfromContig159404Not Available761Open in IMG/M
2124908038|B3_all_c_ConsensusfromContig69530All Organisms → cellular organisms → Bacteria13065Open in IMG/M
2140918008|ConsensusfromContig234074All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → unclassified Prolixibacteraceae → Prolixibacteraceae bacterium985Open in IMG/M
2140918008|ConsensusfromContig284404Not Available1272Open in IMG/M
2140918008|ConsensusfromContig291435All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Lunatibacter → Lunatibacter salilacus2160Open in IMG/M
2140918008|ConsensusfromContig296499All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae1462Open in IMG/M
2140918008|ConsensusfromContig310088Not Available909Open in IMG/M
2140918008|ConsensusfromContig340239Not Available939Open in IMG/M
2140918023|ConsensusfromContig39318Not Available713Open in IMG/M
2140918024|NODE_199593_length_876_cov_5.325343Not Available926Open in IMG/M
2140918024|NODE_220551_length_860_cov_12.111628All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes910Open in IMG/M
2140918024|NODE_323301_length_1184_cov_13.319257Not Available1234Open in IMG/M
2140918024|NODE_81881_length_6732_cov_9.355318All Organisms → cellular organisms → Bacteria6782Open in IMG/M
2140918025|NODE_179581_length_737_cov_14.826323All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium787Open in IMG/M
3300001453|JGI20197J15136_1001042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium3431Open in IMG/M
3300001453|JGI20197J15136_1009577Not Available955Open in IMG/M
3300001453|JGI20197J15136_1016846All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes649Open in IMG/M
3300001453|JGI20197J15136_1017751Not Available627Open in IMG/M
3300002071|JGIcombinedJ21915_10008651All Organisms → cellular organisms → Bacteria4567Open in IMG/M
3300002071|JGIcombinedJ21915_10102303All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium1144Open in IMG/M
3300002071|JGIcombinedJ21915_10184366Not Available758Open in IMG/M
3300002071|JGIcombinedJ21915_10232480Not Available646Open in IMG/M
3300002515|JGI24144J35610_10116375Not Available620Open in IMG/M
3300002551|JGI24135J36437_1000190All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes20746Open in IMG/M
3300002551|JGI24135J36437_1021259Not Available1116Open in IMG/M
3300002564|JGI24134J36421_10011867All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2832Open in IMG/M
3300002564|JGI24134J36421_10011867All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2832Open in IMG/M
3300002569|JGI24136J36422_10027068All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1788Open in IMG/M
3300002569|JGI24136J36422_10047022All Organisms → cellular organisms → Bacteria1277Open in IMG/M
3300002569|JGI24136J36422_10079297All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium914Open in IMG/M
3300002569|JGI24136J36422_10141639Not Available627Open in IMG/M
3300002569|JGI24136J36422_10147812All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300003432|JGI20214J51088_10150509All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1645Open in IMG/M
3300003432|JGI20214J51088_10531389All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium752Open in IMG/M
3300003541|JGI20214J51650_10057161All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter2599Open in IMG/M
3300003541|JGI20214J51650_10959258Not Available597Open in IMG/M
3300006795|Ga0075520_1039593All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2305Open in IMG/M
3300006795|Ga0075520_1040326All Organisms → cellular organisms → Bacteria2281Open in IMG/M
3300006795|Ga0075520_1086056All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1446Open in IMG/M
3300006795|Ga0075520_1131127All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1109Open in IMG/M
3300006795|Ga0075520_1258559All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium723Open in IMG/M
3300006795|Ga0075520_1300925Not Available659Open in IMG/M
3300006795|Ga0075520_1308110All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes649Open in IMG/M
3300006795|Ga0075520_1313070All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300014490|Ga0182010_10291825All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes874Open in IMG/M
3300014494|Ga0182017_10250046Not Available1120Open in IMG/M
3300014494|Ga0182017_10712021Not Available608Open in IMG/M
3300014496|Ga0182011_10297461Not Available1072Open in IMG/M
3300014496|Ga0182011_10490169All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium HGW-Bacteroidetes-22792Open in IMG/M
3300014498|Ga0182019_10188735Not Available1327Open in IMG/M
3300014498|Ga0182019_10439683All Organisms → cellular organisms → Bacteria895Open in IMG/M
3300014502|Ga0182021_10125031All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter fetidus2989Open in IMG/M
3300014502|Ga0182021_10146808All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2744Open in IMG/M
3300014502|Ga0182021_10223312All Organisms → cellular organisms → Bacteria2204Open in IMG/M
3300014502|Ga0182021_10572332All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1351Open in IMG/M
3300014502|Ga0182021_10800283Not Available1132Open in IMG/M
3300014502|Ga0182021_12195274All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300014502|Ga0182021_13439916All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWA2_31_9527Open in IMG/M
3300014839|Ga0182027_11199432All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300019785|Ga0182022_1157727All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin1601160Open in IMG/M
3300023254|Ga0224524_1031870All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Microbacter → Microbacter margulisiae1037Open in IMG/M
3300023254|Ga0224524_1065453All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales654Open in IMG/M
3300024238|Ga0224523_1011505All Organisms → cellular organisms → Bacteria2551Open in IMG/M
3300025443|Ga0208081_1029938Not Available956Open in IMG/M
3300025650|Ga0209385_1065759Not Available1269Open in IMG/M
3300025692|Ga0209744_1005694All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4791Open in IMG/M
3300025692|Ga0209744_1036960Not Available1860Open in IMG/M
3300025716|Ga0209746_1035863All Organisms → cellular organisms → Bacteria1774Open in IMG/M
3300025739|Ga0209745_1019654Not Available2877Open in IMG/M
3300025739|Ga0209745_1019946All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2852Open in IMG/M
3300025750|Ga0209747_1140555Not Available777Open in IMG/M
3300025750|Ga0209747_1150235All Organisms → cellular organisms → Bacteria → Proteobacteria740Open in IMG/M
3300025764|Ga0209539_1047049Not Available1866Open in IMG/M
3300025764|Ga0209539_1295910Not Available556Open in IMG/M
3300025852|Ga0209124_10289773Not Available621Open in IMG/M
3300025852|Ga0209124_10354605All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes541Open in IMG/M
3300025865|Ga0209226_10019944All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2964Open in IMG/M
3300025865|Ga0209226_10040486Not Available2108Open in IMG/M
3300025865|Ga0209226_10051212All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1877Open in IMG/M
3300025865|Ga0209226_10086815Not Available1428Open in IMG/M
3300025865|Ga0209226_10111788All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Pinibacter → Pinibacter aurantiacus1239Open in IMG/M
3300025865|Ga0209226_10123755Not Available1169Open in IMG/M
3300025865|Ga0209226_10154774Not Available1024Open in IMG/M
3300025865|Ga0209226_10316705All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium652Open in IMG/M
3300025888|Ga0209540_10014786All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4830Open in IMG/M
3300025888|Ga0209540_10238882All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → Mucilaginibacter myungsuensis1059Open in IMG/M
3300025888|Ga0209540_10282467All Organisms → cellular organisms → Bacteria → Proteobacteria950Open in IMG/M
3300025888|Ga0209540_10341281All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300025888|Ga0209540_10453356Not Available686Open in IMG/M
3300027896|Ga0209777_10464897Not Available940Open in IMG/M
3300028664|Ga0302164_10103654Not Available763Open in IMG/M
3300028674|Ga0302161_10055249Not Available965Open in IMG/M
3300028674|Ga0302161_10224818Not Available508Open in IMG/M
3300028738|Ga0302292_1133631Not Available857Open in IMG/M
3300029984|Ga0311332_11477901All Organisms → cellular organisms → Bacteria → FCB group551Open in IMG/M
3300030000|Ga0311337_10778767Not Available829Open in IMG/M
3300030047|Ga0302286_10641702Not Available541Open in IMG/M
3300030114|Ga0311333_10084714All Organisms → cellular organisms → Bacteria2336Open in IMG/M
3300030114|Ga0311333_10107512Not Available2087Open in IMG/M
3300031232|Ga0302323_102128713Not Available638Open in IMG/M
3300031521|Ga0311364_12242013Not Available534Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil50.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil16.35%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen15.38%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen10.58%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland3.85%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil2.88%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908028Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3EnvironmentalOpen in IMG/M
2124908038Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3EnvironmentalOpen in IMG/M
2140918008Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_allEnvironmentalOpen in IMG/M
2140918023Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3EnvironmentalOpen in IMG/M
2140918024Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_allEnvironmentalOpen in IMG/M
2140918025Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3EnvironmentalOpen in IMG/M
3300001453Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012EnvironmentalOpen in IMG/M
3300002071Barrow Graham LP Ref core NGADG0011-312 (Barrow Graham LP Ref core NGADG0011-312,NGADG0011-212, ASSEMBLY_DATE=20131010)EnvironmentalOpen in IMG/M
3300002515Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21AEnvironmentalOpen in IMG/M
3300002551Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211EnvironmentalOpen in IMG/M
3300002564Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312EnvironmentalOpen in IMG/M
3300002569Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212EnvironmentalOpen in IMG/M
3300003432Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 BulkEnvironmentalOpen in IMG/M
3300003541Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 BulkEnvironmentalOpen in IMG/M
3300006795Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-BEnvironmentalOpen in IMG/M
3300014490Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaGEnvironmentalOpen in IMG/M
3300014494Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaGEnvironmentalOpen in IMG/M
3300014496Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300019785Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300023254Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T75EnvironmentalOpen in IMG/M
3300024238Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T50EnvironmentalOpen in IMG/M
3300025443Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025650Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)EnvironmentalOpen in IMG/M
3300025692Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311 (SPAdes)EnvironmentalOpen in IMG/M
3300025716Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 (SPAdes)EnvironmentalOpen in IMG/M
3300025739Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312 (SPAdes)EnvironmentalOpen in IMG/M
3300025750Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311 (SPAdes)EnvironmentalOpen in IMG/M
3300025764Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-312 (SPAdes)EnvironmentalOpen in IMG/M
3300025852Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)EnvironmentalOpen in IMG/M
3300025865Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 (SPAdes)EnvironmentalOpen in IMG/M
3300025888Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)EnvironmentalOpen in IMG/M
3300027896Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)EnvironmentalOpen in IMG/M
3300028664Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_1EnvironmentalOpen in IMG/M
3300028674Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_1EnvironmentalOpen in IMG/M
3300028738Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_1EnvironmentalOpen in IMG/M
3300029984I_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300030000I_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300030047Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3EnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031521III_Fen_E2 coassemblyEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
beta3_all_012971202124908028SoilCHPVASFLSFTSVAVQSCVGAGHLSPYTGLIESSGAVTVMSPYTMFS
beta3_all_004205802124908028SoilGRSEAWRGFCRQVASFMSFTSVAVQGLLRAGHLSPYTGFIESSSAVTVMSPYTEFS
B3_all_c_018579002124908038SoilWRGFCRPVASFLSFTSVAVQGLLGAGHLSPYTGLIESSGAVTVMSPYTVFS
B3_all_c_012570802124908038SoilGKSEAWRGFCRPVASFLSFTSVAVQGFWRAGLLSPYTSLIESSGAVTVMSPYTVFS
B3_all_c_017837002124908038SoilSVAVQGLLGAGHLSPYTGLIESSGAVTVMSPYTVFS
Bog_all_C_048884502140918008SoilSVAVQGLLRAGHLSPYTDLIESSGAITVMSPYTEFS
Bog_all_C_023714602140918008SoilFLSFTSVAVQGLLGAGHLSPYTGLIESSGAVTVMSPYTVFS
Bog_all_C_026070002140918008SoilGMSEAWRGFCRPVASFLSFTSVAVQGLLRAGHLSPYTGLVESSGAVTVMSPYTAFS
Bog_all_C_030898302140918008SoilVASFLSFTSVAPRPVRAKRVTGVQGLLGAGHLSPYTVLIDSTGAVTVMSPLF
Bog_all_C_059696302140918008SoilFLSFTSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTAFS
Bog_all_C_010897302140918008SoilSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTVFF
B3_GZBA_C_002117802140918023SoilRLAEKSGVQGLLGAGHLSPYTGFVESSGAVTVMSPYTVLS
B_all_v_007647802140918024SoilFLSFTSVAVQGLLGAGYLSPYTGLVESSGAVTVMSPYTLLS
B_all_v_001112502140918024SoilVASFLSFTSVAVQCYMGAGHLSPYTGLIESSGAVTVMSPYTVI
B_all_v_008372002140918024SoilGRSEAWRGFCRQVASFMSFTSVAVQGLLRAGHLSPYTGLIESSSAVTVMSPYTEFS
B_all_v_003969002140918024SoilLSEAWRGFCRPVASILSFASVAVQGWLGAGHLSPYTGLIESSGAVTVMSPYSVFS
b3_nosca_v_022912202140918025SoilCHPVASFLSFTSVAVQSCVGAGHLSPYTGLIESSGAVTVMSPYTISLESRDGLQKP
JGI20197J15136_100104213300001453Arctic Peat SoilLSFTSVAVQVLLGAGHLSPYTDLVESSGVVTVMSPYSACS*
JGI20197J15136_100957733300001453Arctic Peat SoilPSAGWRGFCRQVASFLSFTSVAVQGLLRAGHLSPYTGLIESSGAVTVMSPYTVFS*
JGI20197J15136_101684613300001453Arctic Peat SoilSFTSVAVQGLLGAGHLSPYTGLFESSGVVTVKSPYTVFS*
JGI20197J15136_101775113300001453Arctic Peat SoilGWRGFCRQVASFLSFASVAVQCYMGAGQLSPYTGWVESSGAITVKSP*
JGIcombinedJ21915_1000865153300002071Arctic Peat SoilEAWRGFCRPVASFLSFTSVAVQGLLGAGHLSPCTGFVESSGAVTVKSPYTVFS*
JGIcombinedJ21915_1010230313300002071Arctic Peat SoilRGFCRPVASFLSFTSVAVQGLLGAGHQSPYTGFVEISGAITVMSPYTVFS*
JGIcombinedJ21915_1018436613300002071Arctic Peat SoilFCRQIASFLSFTSVAVQGLLRAGHLSTYTSLIESSGAITVMSPYTVFS*
JGIcombinedJ21915_1023248023300002071Arctic Peat SoilAGWRGFCRPVANFLSFTSVAVQGFWRAGHLSPYTGLIESSGAVTVMSPYTVFS*
JGI24144J35610_1011637523300002515Arctic Peat SoilGITSVAVQSLLRAGHLSPYTDLVESSGAVTVMSPYTVFS*
JGI24135J36437_100019013300002551Arctic Peat SoilSPPSAGWRGFCRQVASFLSFTSVAVQDLLRAGQLSPYTGFIKSSGAVTVKSPYTVLS*
JGI24135J36437_102125923300002551Arctic Peat SoilAYTSVAVQGLLGAGHLSPYTSLVESSSAVTVMSPYTVFS*
JGI24134J36421_1001186743300002564Arctic Peat SoilMSEAWRGFCRPVAGFLSFTSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTVFS*
JGI24134J36421_1001186763300002564Arctic Peat SoilMARVFAIQIQGFVGITSVAVQGLLRAGHLSPYTSLVESSGAVTVM
JGI24136J36422_1002706853300002569Arctic Peat SoilWRGFCRQVASFLSFTSVAVQGLLGAGHLSPYTGFVESSGAVTVMSPFSVFY*
JGI24136J36422_1004702213300002569Arctic Peat SoilMSEAWRGFCHPVASFVSFTSVAVQGLLRAGHLSPYTDLVENSGAITVISPYTVFY*
JGI24136J36422_1007929713300002569Arctic Peat SoilRPVASFLSFTSVAVQGLLRAGQLSPYTSSVESSGAVTVMSPYTVFS*
JGI24136J36422_1014163913300002569Arctic Peat SoilRPVANFLSFTSVAVQGFWRAGHLSPYTGLIESSGAVTVMSPYTVFS*
JGI24136J36422_1014781223300002569Arctic Peat SoilPAGMSEAWRGFCRQVASFLSFTSVAVQCYVGAGHLSSYIGFVGSRGAITVLSPYTVYS*
JGI20214J51088_1015050913300003432WetlandCSPGTSSLSFTRVAVQDWLEAGRLSPYTSFVESSGAVTVKSPFTKAL*
JGI20214J51088_1053138923300003432WetlandLVPARVNEVRRGFCRPVVSFLSFTSVAVHGFLGAGPLSPYRSLFKSSGAVTV*
JGI20214J51650_1005716153300003541WetlandRVLVPARVNEVRRGFCRPVVSFLSFTSVAVHGFLRAGPLSPYTGLIESSGAVTV*
JGI20214J51650_1095925813300003541WetlandEVRRGFCRPVVSFLSFTSVAVHGFLGTGPLSPYKSLFKSSGAVTV*
Ga0075520_103959353300006795Arctic Peat SoilFCRQVASFLSFTSVAVQGLLGAGHLSPYTGLIKSSGAVTVMSPYTELS*
Ga0075520_104032613300006795Arctic Peat SoilMSEAWRGFCRQVASFLSFTSVAVQGLLGAGHLSPYTDLVESSGAVTVMSPYTVFS*
Ga0075520_108605613300006795Arctic Peat SoilWGRGFCRQVASFLSFTSVAVQGLLRAGHLSPYIGFIESSGAVMVMSPYTAFS*
Ga0075520_113112743300006795Arctic Peat SoilASFLSFTSVAVQCLLGAGHLSPYTGLIESSGAVTVMSPYTVFS*
Ga0075520_125855923300006795Arctic Peat SoilWGRGFCRQVASFLSFTSVAVQGLLRAGHLSPYIGFIESSGAVTVMSPYTVFS*
Ga0075520_130092523300006795Arctic Peat SoilSEAWRGFCRPVASFLSFTSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTVFS*
Ga0075520_130811013300006795Arctic Peat SoilPAPAGKSEAWRGFCRPVASFLSFTSVAVQCCLRAGLLSPYTGLIESRDAVTVMSPYTVFS
Ga0075520_131307023300006795Arctic Peat SoilPVASFLSFTSVAVQGLLRAGHLSPYTGLVESSGAVTVISPYTVFS*
Ga0182010_1029182513300014490FenPAPAGMSEAWRGFCRQVASFLSFTSVAVQGCLRAGHLSPYTGLVKSSGAITVMSPYSVFS
Ga0182017_1025004623300014494FenMSEAWRGFCCQVASFLSFTSVAVQGLLRAGHLSPYTGLIESNGAVTVKSPYTEAF*
Ga0182017_1071202113300014494FenPARTSEAWRGFCRPVASFLSFTSVAVQGLLGAGHLSPYTGLVESSGAITVMSPYTVFS*
Ga0182011_1029746123300014496FenEAWRGFCHPVASFISFTGVAVQGFLGAGHLSPYMSLIASSGAVTVMSPSTVFS*
Ga0182011_1049016913300014496FenGFCRPVASFLSFTSVAVQGLKGAGHLSPYMDLIESSGAVTVKSPYTIFS*
Ga0182019_1018873513300014498FenVASFISFTGVAVQGFLGAGHLSPYMSLIASSGAVTVMSPSTVFS*
Ga0182019_1043968323300014498FenMLQGFLSFTSVSVQGLLGAGHLSPYKGLIESSGAVTVMSPYT
Ga0182021_1012503113300014502FenLVPAGTSEAWRGFCRQVASFLSFTSVAVQCCVGAGHLSPYTGLIESSGAVTVMSPYTMFS
Ga0182021_1014680813300014502FenMSEAWRGFCRQVASFLSFTSVAVQGLLRAGHLSPYTGLVESSGAVTVMSPYTVFS*
Ga0182021_1022331213300014502FenGWSEAWRGFCHPVASFISFTGVAVQGFLGAGHLSPYMSLIASSGAVTVMSPSTVFS*
Ga0182021_1057233213300014502FenGWSEAWRGFCHPVASFISFTGVAVQGFLGAGHLSPYMSLIESSGAVTVMSPSTVFS*
Ga0182021_1080028313300014502FenSEAWRGFCRQVASFLSFTSVAVQCLLGAGHLSPYTGLVESSGAVTVMSPYTVFS*
Ga0182021_1219527413300014502FenMNEVRRGFCCPGTSFVSYTSVAVQGLLGAGHLSPYTSFIESSGAVTVISPYTVFS
Ga0182021_1343991623300014502FenHRRGGAVFAVLVQSILSFTSVAVQGLLGAGHLSPYTNLVESSGAVTVMSPYTVFS*
Ga0182027_1119943223300014839FenSRGRVLVPAGMSEAWRGFCRQVASFLSFTSVAVQGLLRAGHLSSYTGFVESNGAVTVMSPYTVFS*
Ga0182022_115772713300019785FenGRSEAWRGFCRQVASFLSFTSVAVQGCVEQVTCHLTQGLIESSGAVTVMSPYTVFS
Ga0224524_103187013300023254SoilRGRVPAPAGKSEAWRGFCRQVASFLSFTSVAVQGLLGTGHLSPYTGLIESSGAVTVLSPYTVFS
Ga0224524_106545323300023254SoilFFSFTSVAVQGGMRAGHLSPYTNLAESSGAVTVMSPYTVFS
Ga0224523_101150513300024238SoilSAGWSEAWRGFCHPVASFISFTGVAVQGFLGAGHLSPYMSLIESSGAVTVMSPSTVFS
Ga0208081_102993813300025443Arctic Peat SoilAWRGFCRQVASFLSFTSVAVQVLLKVGNLSPYTDFVESSGAVTVMSPYNVFS
Ga0209385_106575913300025650Arctic Peat SoilQVASFLSFTSVAVQGLLRAGHLSPYTDLIESSGAVTVMSPYTVFS
Ga0209744_100569473300025692Arctic Peat SoilSAGWRGFCHPIASFLNFTSVAVQSLERAGHLSPYTGLVESSGAVTVMSPYTVFS
Ga0209744_103696023300025692Arctic Peat SoilMSEAWRGFCRPVAGFLSFTSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTVFS
Ga0209746_103586313300025716Arctic Peat SoilSEAWRGFCRPVAGFLSFTSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTVFS
Ga0209745_101965413300025739Arctic Peat SoilVFAVMVQVLLSITSVAVQGLLRAGHLSPYTGLIESSGAVTVMSPYTVFS
Ga0209745_101994613300025739Arctic Peat SoilMARVFAIQIQGFVGITSVAVQGLLRAGHLSPYTSLVESSGAVTVMSP
Ga0209747_114055513300025750Arctic Peat SoilCRPVASFLSFPSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTVFS
Ga0209747_115023523300025750Arctic Peat SoilAWRGFCHPVASFLSFTSVAVQVLLGAGHLSPYKCFIESSGAVTVMSPYTVFS
Ga0209539_104704933300025764Arctic Peat SoilRGFCRQIASFLSFTSVAVQGLLGAGHLSPYTDFIESSGAVTVMSSYTAFS
Ga0209539_129591013300025764Arctic Peat SoilRSEAWRGFCRQVASFLSFTSVAVQGLLRAGQLSPYSGLVESSGAVTVMSPYTVFS
Ga0209124_1028977313300025852Arctic Peat SoilMAGFLQVQVQLFLSFTSVAVQGLLRAGHLSPYTGLIESSGAVTV
Ga0209124_1035460513300025852Arctic Peat SoilEAVMSEAWHGFCRPVASYLSFTSVAVQCLLRAGHLSPYTGLIESSGAVTVMSPYTVFS
Ga0209226_1001994413300025865Arctic Peat SoilEAWRGFCRQIASFLSFTSVAVQGLLRAGHLSTYTSLIESSGAITVMSPYTVFS
Ga0209226_1004048613300025865Arctic Peat SoilGWRGFCRPVASFFSFTSVAVQGLLRAGHLSPYTGLVESSGEVTVMSPYVEFS
Ga0209226_1005121243300025865Arctic Peat SoilRGFCRQVASFLSFTSVAVQGLLGAGHLSPYTGFVESSGAVTVMSPFSVFY
Ga0209226_1008681513300025865Arctic Peat SoilPVPAGRSEAWRGFCRQVASFLSFTSVAVQGLLRAGHLSPYTGLIESSGAVTVMSPYTVFS
Ga0209226_1011178813300025865Arctic Peat SoilEAWRGFCRQVASFLSFTSVAVQGLLGAGHLSPYTGLIESSGAVTVLSPYTECS
Ga0209226_1012375513300025865Arctic Peat SoilGWRGFCRQVASFLSFTSVAVQGLLRAGHLSPYTGLIESSGAVTAMSPYTVFS
Ga0209226_1015477413300025865Arctic Peat SoilQVASFLSFTSVAVQGLLRAGHLSPYTDLVESSGTVTVMSPYTVFS
Ga0209226_1031670513300025865Arctic Peat SoilPPSAGWRGFCRQVASFLSFTSVAVQGLLKAGQLSPYTGLIESSGAVMVMSPYTVFS
Ga0209540_1001478643300025888Arctic Peat SoilAGMSEAWRGFCRQVASFLSFTSVAVQGLLRAGHKSPYIGLVESSGAVTVMSPYTVFF
Ga0209540_1023888213300025888Arctic Peat SoilWRGFCRPVASFLSFTSVAVQDLLGAGHLSPYTGLIKSSGAVTVMSPYTMFS
Ga0209540_1028246713300025888Arctic Peat SoilKSEAWRGFCRPVASFLSFTSVAVQGLVRAGHLSPYTGLIESTGAVTVMYP
Ga0209540_1034128113300025888Arctic Peat SoilSEAWRGFCHPVASFLSFTSVAVQGLLGAGHLSPYTDLVESSGAVTVMSPYTVFS
Ga0209540_1045335613300025888Arctic Peat SoilPAPAVMSEAWRGFCRPVASFLSFTSVAVQGLLKAGHLSPYTDLVESSGAVTVMSPYTVFS
Ga0209777_1046489713300027896Freshwater Lake SedimentCRAPTNPPASGEDGGAVFAIRVQGFLRFTSVAVQSLLEVGHLSPYTSLIESSGAVSVMSPYTVFS
Ga0302164_1010365413300028664FenMLQGFLSFTSVAVQGFWXAGHLSPNTGLIESSGAVTVMSPYTVFSXEH
Ga0302161_1005524923300028674FenLPAGMSEAWRGFCRQVASFLSFTSVAVQGLLGEGHLSPYTGLFESNGAVTVMSPYTVFS
Ga0302161_1022481813300028674FenEKLSRGRVLVPAGMSEAWRGFCHHVASFLSFTSVAVQGLLRAGHLSPYTGLVESTGAVTVMSPYTVFS
Ga0302292_113363113300028738FenMSEAWNGFCRQVASFLSFTSVAVQCYVGAGHLSPYTGLIESSGAVTVMSPYTVFS
Ga0311332_1147790113300029984FenEAWRGFCRPVASFLSFTSVAVQGLLGAGHLSPYTGLVESSGAITVKSPYTVFS
Ga0311337_1077876713300030000FenGNVPVPARMSEAWRGFCRQVECFLSFTSVAVQCLLGAGHLFPYTDLVESSGAVTVMSPYTVFA
Ga0302286_1064170213300030047FenLVPAGMSEAWRGFCRQVASFLSFTSVAVQGLLGEGHLSPYMCLVKSSGAVTVMSPYTVFS
Ga0311333_1008471443300030114FenVSPHRVRVPLPAGMSEAWRGFCRQVASFLSFTSVAVQGLLGEGHLSPYTGLFESNGAVTVMSPYTVFS
Ga0311333_1010751213300030114FenMSEAWRGFCRQVASFLSFTSVAVQGLLGEGHLSPYMCLVKSSGAVTVMSPYTVFS
Ga0302323_10212871323300031232FenEAWRGFCRQVASFLSFTSVAVQGLLGAGHLSPYNGFIESRGSVMVMSP
Ga0311364_1224201323300031521FenGKSEAWRGFCRQVASFLSFTSVCHDRACERHGVAVQCLLGAGHLSPYTGLIESSGGPVPFERSE


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