NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2140918023

2140918023: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3



Overview

Basic Information
IMG/M Taxon OID2140918023 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063124 | Gp0051911 | Ga0026287
Sample NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size52031674
Sequencing Scaffolds37
Novel Protein Genes38
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Fulvivirga → Fulvivirga marina1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium1
All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Permafrost In Bonanza Creek, Alaska
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → solid layer → permafrost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)N/ADepth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002210Metagenome / Metatranscriptome583Y
F007147Metagenome / Metatranscriptome357Y
F008168Metagenome / Metatranscriptome338Y
F009862Metagenome / Metatranscriptome312Y
F010068Metagenome / Metatranscriptome309Y
F010213Metagenome / Metatranscriptome307Y
F012640Metagenome / Metatranscriptome279Y
F014811Metagenome260Y
F016481Metagenome / Metatranscriptome247Y
F022789Metagenome213Y
F024934Metagenome204Y
F028976Metagenome / Metatranscriptome190Y
F029942Metagenome / Metatranscriptome187Y
F030615Metagenome185Y
F032882Metagenome / Metatranscriptome179Y
F042098Metagenome159Y
F042655Metagenome158Y
F045455Metagenome / Metatranscriptome153Y
F046737Metagenome151Y
F055311Metagenome / Metatranscriptome139Y
F056198Metagenome138Y
F057781Metagenome / Metatranscriptome136Y
F059490Metagenome / Metatranscriptome134Y
F059491Metagenome134Y
F068285Metagenome / Metatranscriptome125Y
F069504Metagenome124Y
F071802Metagenome / Metatranscriptome122N
F074194Metagenome120Y
F078013Metagenome117Y
F080676Metagenome115Y
F084900Metagenome / Metatranscriptome112Y
F084901Metagenome112N
F087967Metagenome110Y
F092956Metagenome107Y
F096293Metagenome / Metatranscriptome105Y
F098320Metagenome104Y
F104112Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ConsensusfromContig10030Not Available1030Open in IMG/M
ConsensusfromContig12522Not Available795Open in IMG/M
ConsensusfromContig15086All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2048Open in IMG/M
ConsensusfromContig16050All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2680Open in IMG/M
ConsensusfromContig16119Not Available3142Open in IMG/M
ConsensusfromContig1736Not Available938Open in IMG/M
ConsensusfromContig22540All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1508Open in IMG/M
ConsensusfromContig22970All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1675Open in IMG/M
ConsensusfromContig24047All Organisms → cellular organisms → Bacteria640Open in IMG/M
ConsensusfromContig26132All Organisms → cellular organisms → Bacteria1200Open in IMG/M
ConsensusfromContig26239All Organisms → cellular organisms → Archaea974Open in IMG/M
ConsensusfromContig26251All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1175Open in IMG/M
ConsensusfromContig26299Not Available1018Open in IMG/M
ConsensusfromContig27381Not Available738Open in IMG/M
ConsensusfromContig27733All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4635Open in IMG/M
ConsensusfromContig27750All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium671Open in IMG/M
ConsensusfromContig29689Not Available664Open in IMG/M
ConsensusfromContig30026All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Fulvivirga → Fulvivirga marina1013Open in IMG/M
ConsensusfromContig30350All Organisms → cellular organisms → Bacteria1289Open in IMG/M
ConsensusfromContig31080Not Available601Open in IMG/M
ConsensusfromContig3280All Organisms → cellular organisms → Archaea1916Open in IMG/M
ConsensusfromContig33765All Organisms → cellular organisms → Bacteria600Open in IMG/M
ConsensusfromContig35240All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales1545Open in IMG/M
ConsensusfromContig35791Not Available603Open in IMG/M
ConsensusfromContig36280All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1817Open in IMG/M
ConsensusfromContig36294All Organisms → cellular organisms → Bacteria793Open in IMG/M
ConsensusfromContig36865Not Available751Open in IMG/M
ConsensusfromContig37723All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria920Open in IMG/M
ConsensusfromContig39234All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium606Open in IMG/M
ConsensusfromContig39318Not Available713Open in IMG/M
ConsensusfromContig41973Not Available768Open in IMG/M
ConsensusfromContig4399All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia728Open in IMG/M
ConsensusfromContig44327All Organisms → cellular organisms → Bacteria2741Open in IMG/M
ConsensusfromContig45046Not Available839Open in IMG/M
ConsensusfromContig45493All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont935Open in IMG/M
ConsensusfromContig47809All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1172Open in IMG/M
ConsensusfromContig8348All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium601Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ConsensusfromContig10030B3_GZBA_C_00182700F024934MPADAEFAKKIIKMRVRYVLEKSQGQILDEKKIKNIADKVRQGENNRAVADEIKKLTLNGIEKAKPLLKDVVKQLLDEYAQSIKEITDEAILEMVSGEIQKMAEEQAEK
ConsensusfromContig12522B3_GZBA_C_00411540F030615MKKKKFRVICYNKGETSFYETRIKTWLGWVSFTVFYKTDIIHILSDPSVQKSLAYERIFQYCQIQGYNKKNVEISEIDK
ConsensusfromContig15086B3_GZBA_C_00740000F032882VNPRKADLIKASMPASATPNIQPRSEWYWGRRRQDIDHSYFKRSPQIRLGGRVGEGNDDGSTSVEKSDLSILAMKLAKASGAKGEMD
ConsensusfromContig16050B3_GZBA_C_00380300F055311MAEDLLDYWVRLIKTIFPANAWITSRFFNNDHLIQVDWKLQNDPKNPNKRSKKIEIIIKEGTIENYLGKNKKDRELSDIMLKEFIYERYNHFSSNNDICTTKYVPKERWLISRDVLNCKPSFDTPFRDKVKSVYQ
ConsensusfromContig16119B3_GZBA_C_00018820F092956MPSKVNWMHDSDDRMLARYQHLHKSALKVKAFQLQKIQRTETRELCISALLKAVVICNDTLKEMGFEDYEAGHEQSLLEKSS
ConsensusfromContig1736B3_GZBA_C_00627270F084901METHRKTYYSTDRREQYKKRAFEADLLKLAVAIVAELLIFFVWFDGPARERYEILVHIALPICIVLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFVPFIRRPKTALVAGYAACAIWASHLIVDARKYTPIQNVGGYLWSDLVLYALLLTVIGFLLLQLLRFSETNEMARS
ConsensusfromContig17482B3_GZBA_C_00372560F068285IDPTLAIPAERIDWMQELFVKAGVIPKTVPTASLIDTSVRDDATKLSIK
ConsensusfromContig22540B3_GZBA_C_00427940F008168MANKIIKIIAHLPAIPDWLKIDNSITVPLPMKSAKELAQKLLEVQDDVEIKLNFASGKKTTVEINWESEKKE
ConsensusfromContig22970B3_GZBA_C_00855300F104112WQGIEWRFHEHCTSAIDEADDSLRAVMWQIAMGVVSKTDENGNFIVEACGQPNMKMARHFLEWQRPEKWGKRRKRHVPHNAGVLVIGGDVTKKPEYDTTASVKARKWKSFSRKFREAKT
ConsensusfromContig24047B3_GZBA_C_00351560F045455FSLVVNQALLVLLAYTLVQVHLVLRQRQELNRGVWEYTRQMLSPSLEVVAVYYRQRFCLLTLAEFGRILLDIPDPARAKLREKLKRIERQQYSLLENARPP
ConsensusfromContig26132B3_GZBA_C_00031880F087967MKIDIGSYVRIAGNFPSNRNLQDQTGTIESLPNKEHRREYLVKLYGGIVSPHLAGMLVWVPSSKLELANKNIALS
ConsensusfromContig26239B3_GZBA_C_00134100F016481MMYGKETEGSDKHEMEGMKGFWEHMSEDKKKMFIKAKLDFKIKKVQAKLDFLKELQKIFG
ConsensusfromContig26251B3_GZBA_C_00146430F046737MKSLRILTTIKVAFYFIAFMAIIVACDSEQGMMHGGSGSMNMGNWNWVLILLGLIIVFLLGYLV
ConsensusfromContig26299B3_GZBA_C_00191540F028976MENKEKTTVLFTEKYDHNVLTHFIADKDYCAQADNFIKKILSDAHTLPHEIICDCLLWKTKELPLLSIKGDAVDTTRMLMLYEGNGLAEFVFNSGKCHYSICRLHSLHRIERTDYSLIVVTQNALVPCAEIIIFGKYQLMYRLSVEGYKEVEELDKFLVKLKDLMLK
ConsensusfromContig27381B3_GZBA_C_00274950F059491MFSLNKLSEDDIPIPITHRCRPERIGKDMTGLELHEFGLALFTSYFSDQGGELFAINMNPENGAPHVMIWNQQKVLLYVWVKTDLAPNIPVYVPNETHDVITEISRKYKAIPSFASITISCASKEGNLIPKCGGEYYAVLNEFEEI
ConsensusfromContig27733B3_GZBA_C_00625020F012640MSQSFTFIDIAGNQAQYTVWEKDLHDEFHWSTDHGDHGVASAFEDAQLRARTVLKDSMAANRRSDEATRMSKYSVRWRSH
ConsensusfromContig27750B3_GZBA_C_00641200F010213MTTVAKADKSRLTIRGLVDGDQYIVREQPGGWFITPEKKHRVKKSGMSAEAFARIYRSRTPLDPATAAEISANLAATDKAQ
ConsensusfromContig29689B3_GZBA_C_00578760F042655PQQYIDFIKKEIKTPKRPNTDLLELWLERELSIENKGTYGNTPTDESHVTVQVLPNGNYKVLISDACFTMIVSHVQPEPHSHKISNEDLFHCWLDLKTNKVHAEEHIKVKETA
ConsensusfromContig30026B3_GZBA_C_00145600F080676MILAINFLTETLNMKRLLVVIFGIFIVTVSCDKDRINENFRDDPSILNINGKWKVVSYEDFEKASVTVKNDVDSWNGMDVILTFADSTFYGHNTANIVSGKYTLAGRYINIIIYGGTKIGQPAWGNMFSDIVYRLRTFAINEHQLRFYYNDSANSVTLTHD
ConsensusfromContig30350B3_GZBA_C_00243620F022789MADPSQTVSIVAAAESVATFEWHQLHLHVVTREPLSADQVRTIQRTLPKVASVGMFVDLLGMLLGRSVRIRTERPSPDIRLEVGR
ConsensusfromContig31080B3_GZBA_C_00681620F074194MRVQMNVRSSFILGVAAFAATAAGLACYEKPNSFQPVTYGAQPWNPPADWDPEPACAVGYYVAIDTCPGCTGISYALCTGVTFTQCACGGPFWPGAECPKSLGCSPDDFPPFNWLEFTWYAGPGWAGLSPGADTRTCP
ConsensusfromContig3280B3_GZBA_C_00172530F078013MRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSFIMPKVVPHYKQFDGVKTIQLLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFD
ConsensusfromContig33765B3_GZBA_C_00657010F002210MSSKPEHPIQAMGFWIFGFLSVVLAVLKLTVAGYWSWWRVALPFLAFLGHNAVHLLTGFLCLCWLKHEEDEEEPSTVQKHSREGYNKAALLFFFLFLDNLLRRIEGQGWKGFWPCSGRFEVVVLFGMLSLVAQFVYWSRIVSGLNQEHA
ConsensusfromContig35240B3_GZBA_C_00135180F096293MVLISTPFITYRDIKVKDIDLIEDAWGLNTEFCDVIDLLRQINEVPGRCLTTNLIKKIRK
ConsensusfromContig35791B3_GZBA_C_00682500F014811MWIYDYRTKKEYFASSPRSKFYNYKSIVVEPIPGKPCTILIKKEMEEGRKPAQILEQLDIFTSMSNSSNT
ConsensusfromContig36280B3_GZBA_C_00173190F007147MVKRAAKNDGVRRCLAGGVVVFLWTVSLQVRALAENDLLQKAINYLFTGRTDPQDIPEILDRKSCVVVVPDAKSKQYVRYYLGRFRMDTALIDKTYAGSDTAYNLDIKGAEVIVEYLDIDKSTVLHGYKSAHISLPGDIDQTNKALELIASLCRNGKPKAQF
ConsensusfromContig36294B3_GZBA_C_00186770F059490MKRPAENQMRKKILVNALSKNLEKMSKSPWVRSLKDGKDLVCPFCDQPIQPCKSNPSATCEKMLLAGTEGKELENALKECDENKYGLCLSCGKKISTGHLKKHPTAELCSHCVRKGHKTGKKKTTHV
ConsensusfromContig36865B3_GZBA_C_00754470F071802MGAKTSKPNYASLISKILIVLVILNIAGDVLAAAFFLWDPSLGELSVYGGLIASFAGKNGAVMITSAILLGYAVVYAVSVFGLLSKLKWAPPLVIAVSVVNRVLALGVIFEPNVAFLIWSAWKLVIIALAFYLWQKK
ConsensusfromContig37723B3_GZBA_C_00615400F010068MNIKGSTYVTTKTTMIEAFGEERWNSFMAKLVEKDNYFSKMIMSITLIPVEKLIIFFDEMCKEFFNNDRMQYSMFGKAGAKFVLSPEGPYRSYMLAKDINQFVELYMPKIWSTYFDGGVFTAKFVNNIVHIKVTGVDVKNFYFEELIMGYNQQALKLFGKKSVAKRVRSISSGDDDIYFQFELKDS
ConsensusfromContig39234B3_GZBA_C_00130130F084900MARKINDDTRASLAFIEALHRTEDMDFSRDDIIISEKKKMGDPVVCTIEARKRNGISSQAKGKAFIYSDLVIVCVESVRKKSRAPIHPHHYEYLSY
ConsensusfromContig39318B3_GZBA_C_00211780F098320RLAEKSGVQGLLGAGHLSPYTGFVESSGAVTVMSPYTVLS
ConsensusfromContig41973B3_GZBA_C_00859210F042098NKTPETMSYYFTKNGDYMSMETPDSQKDKDMNFMISTKDGLMITFGEERVPKSQDKNRKVLKVMDMHSMMKGSAESMAALAKTLPKKDKPDTENKKPNQLDNFIKTGKTKQFFGYPAEEYSKEFTKEENGQMHSGTMSAWYAKVDFDPEMMFSLGMGSMAGGQSQSKMNQSHPNNMLGMGLTQKNYLLVEMNFAENGGKSGTAMKVVSIEKTSFSKSTDGYYIKNYAGMSMMEMMQKESEEK
ConsensusfromContig4399B3_GZBA_C_00291120F009862DKPLVVRCPNCKQMREPDLNETTHRYVCPICSEPLDTQVVVEKKKRGLK
ConsensusfromContig44327B3_GZBA_C_00221000F024934MAENAEFAKRIIKMRIKYVLESSQGQILDEKKLRNIAIKVKQGESNPAIAEEIRKLAVNGIEKAKPLLKDVVKQLVDEYIQTVMDITDEAILEMVSGEIQKMVKEQSPK
ConsensusfromContig45046B3_GZBA_C_00341760F029942MPKYKVEFSDKTTTLPEHELDFPNVEAACKGARKIASKLRAAGMIMYGSNFSDWRMTIMNEHGKTVAEFPLEEHEDI
ConsensusfromContig45493B3_GZBA_C_00383320F057781MPKPDLQLLTQWLDPALVSILEAKRRLKNEWHRHRKLATLETLWLMLAVSLDTHQSSLYEILRLATGTLDIQWSIS
ConsensusfromContig47809B3_GZBA_C_00699790F056198SWYFSQKVVTVQGGYGALFAVMVQILLSITSVAVQV
ConsensusfromContig8348B3_GZBA_C_00241400F069504RLLADLCAKRGAATAKRIMGRKIQEGRPTKAAPRPDSVRKAVEYRMAKLGIPTEHKRRKPDMREAKRWTEAQTTALLGALGADATIESIAARTGHSVKSVRAKIARLDYAVHEVHGFAVFTVNSLADLLRVTPRQIRRWKERGWLETKARRITEECLGQFLRAHPDRIPFDSLRREDQVFLVDLGFPCQEAATFKKNVR
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