Metagenome / Metatranscriptome Family F101621

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101621
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	58 residues
Representative Sequence	LPSPLGVSPVTAAVMAVDSYPVGPVDTVRIQRVANVMRQFLGFPAFNVGSMISG
Number of Associated Samples	87
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.98 %
% of genes near scaffold ends (potentially truncated)	97.06 %
% of genes from short scaffolds (< 2000 bps)	87.25 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.412 % of family members)
Environment Ontology (ENVO)	Unclassified (20.588 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.137 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.59% β-sheet: 0.00% Coil/Unstructured: 63.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01738	DLH	12.75
PF13279	4HBT_2	10.78
PF02274	ADI	6.86
PF02449	Glyco_hydro_42	3.92
PF03928	HbpS-like	3.92
PF03061	4HBT	2.94
PF13379	NMT1_2	1.96
PF13361	UvrD_C	1.96
PF08044	DUF1707	0.98
PF00248	Aldo_ket_red	0.98
PF00202	Aminotran_3	0.98
PF00324	AA_permease	0.98
PF00795	CN_hydrolase	0.98
PF00355	Rieske	0.98
PF06965	Na_H_antiport_1	0.98
PF13714	PEP_mutase	0.98
PF00378	ECH_1	0.98
PF00999	Na_H_Exchanger	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	6.86
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	6.86
COG4874	Uncharacterized conserved protein	Function unknown [S]	6.86
COG1874	Beta-galactosidase GanA	Carbohydrate transport and metabolism [G]	3.92
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.96
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.98
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.98
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.98
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.98
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.98
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.98
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.98
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
All Organisms	root	All Organisms	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
cellular organisms	root	All Organisms → cellular organisms	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	19.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19.61 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.67 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Halomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae	1.96 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.98 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	1.96 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.98 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.98 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Halomonas anticariensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas anticariensis	1.96 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.98 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.98 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Halomonas anticariensis FP35 = DSM 16096	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas anticariensis → Halomonas anticariensis FP35 = DSM 16096	1.96 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.98 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.98 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Halomonas anticariensis FP35 = DSM 16096	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas anticariensis → Halomonas anticariensis FP35 = DSM 16096	1.96 %
Frankia sp. EI5c	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EI5c	0.98 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.98 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001653\|JGI20275J16321_101024	Not Available	645	Open in IMG/M
3300002245\|JGIcombinedJ26739_100545750	Not Available	1036	Open in IMG/M
3300003505\|JGIcombinedJ51221_10236227	Not Available	742	Open in IMG/M
3300004080\|Ga0062385_10417993	Not Available	806	Open in IMG/M
3300004082\|Ga0062384_100287643	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300005439\|Ga0070711_101148519	Not Available	670	Open in IMG/M
3300005712\|Ga0070764_10154914	Not Available	1262	Open in IMG/M
3300005950\|Ga0066787_10049575	Not Available	805	Open in IMG/M
3300006028\|Ga0070717_10114111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2307	Open in IMG/M
3300006028\|Ga0070717_11962024	Not Available	528	Open in IMG/M
3300006175\|Ga0070712_101231019	Not Available	651	Open in IMG/M
3300006893\|Ga0073928_10115935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2218	Open in IMG/M
3300009623\|Ga0116133_1156042	Not Available	600	Open in IMG/M
3300009623\|Ga0116133_1207408	Not Available	528	Open in IMG/M
3300009839\|Ga0116223_10058750	All Organisms → cellular organisms → Bacteria	2490	Open in IMG/M
3300010366\|Ga0126379_11275418	Not Available	841	Open in IMG/M
3300010366\|Ga0126379_13412622	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300011120\|Ga0150983_11587696	Not Available	804	Open in IMG/M
3300017932\|Ga0187814_10315263	Not Available	600	Open in IMG/M
3300017970\|Ga0187783_10079917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2409	Open in IMG/M
3300017973\|Ga0187780_10982925	Not Available	615	Open in IMG/M
3300017973\|Ga0187780_11228445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300017975\|Ga0187782_11321490	Not Available	566	Open in IMG/M
3300017994\|Ga0187822_10138607	Not Available	773	Open in IMG/M
3300017999\|Ga0187767_10329888	Not Available	530	Open in IMG/M
3300018035\|Ga0187875_10156191	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300018046\|Ga0187851_10098652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1819	Open in IMG/M
3300018060\|Ga0187765_10812653	Not Available	625	Open in IMG/M
3300018090\|Ga0187770_10719075	Not Available	797	Open in IMG/M
3300018468\|Ga0066662_10774114	Not Available	927	Open in IMG/M
3300019240\|Ga0181510_1269725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300019268\|Ga0181514_1201404	Not Available	530	Open in IMG/M
3300020582\|Ga0210395_10653419	Not Available	788	Open in IMG/M
3300021170\|Ga0210400_11434809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300021171\|Ga0210405_10368059	Not Available	1133	Open in IMG/M
3300021384\|Ga0213876_10781449	Not Available	508	Open in IMG/M
3300021388\|Ga0213875_10625949	Not Available	521	Open in IMG/M
3300021401\|Ga0210393_10212956	Not Available	1564	Open in IMG/M
3300021401\|Ga0210393_10890555	Not Available	722	Open in IMG/M
3300021402\|Ga0210385_10747603	Not Available	749	Open in IMG/M
3300021474\|Ga0210390_10874147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	741	Open in IMG/M
3300021559\|Ga0210409_10599017	Not Available	970	Open in IMG/M
3300021560\|Ga0126371_11614756	Not Available	774	Open in IMG/M
3300022722\|Ga0242657_1251840	Not Available	507	Open in IMG/M
3300025320\|Ga0209171_10470941	Not Available	628	Open in IMG/M
3300027867\|Ga0209167_10021740	All Organisms → cellular organisms → Bacteria	3055	Open in IMG/M
3300027879\|Ga0209169_10538545	Not Available	612	Open in IMG/M
3300027908\|Ga0209006_10554060	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300028759\|Ga0302224_10339974	Not Available	606	Open in IMG/M
3300028775\|Ga0302231_10010680	All Organisms → cellular organisms → Bacteria	4277	Open in IMG/M
3300028906\|Ga0308309_10520882	Not Available	1029	Open in IMG/M
3300028906\|Ga0308309_11556632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300029882\|Ga0311368_10447725	Not Available	940	Open in IMG/M
3300029943\|Ga0311340_10161859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2322	Open in IMG/M
3300029943\|Ga0311340_10183333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2135	Open in IMG/M
3300029951\|Ga0311371_12193061	Not Available	577	Open in IMG/M
3300029999\|Ga0311339_10122893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3129	Open in IMG/M
3300029999\|Ga0311339_10756877	Not Available	941	Open in IMG/M
3300030007\|Ga0311338_11579637	Not Available	601	Open in IMG/M
3300030007\|Ga0311338_11843757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300030057\|Ga0302176_10025433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2242	Open in IMG/M
3300030399\|Ga0311353_10509164	Not Available	1066	Open in IMG/M
3300030399\|Ga0311353_11504326	Not Available	545	Open in IMG/M
3300030520\|Ga0311372_10256697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2822	Open in IMG/M
3300030646\|Ga0302316_10368680	Not Available	578	Open in IMG/M
3300030659\|Ga0316363_10072033	All Organisms → cellular organisms → Bacteria → Proteobacteria	1587	Open in IMG/M
3300030743\|Ga0265461_12191844	Not Available	639	Open in IMG/M
3300030760\|Ga0265762_1154019	Not Available	549	Open in IMG/M
3300031234\|Ga0302325_10615793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1593	Open in IMG/M
3300031234\|Ga0302325_12459078	Not Available	623	Open in IMG/M
3300031525\|Ga0302326_10321184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2457	Open in IMG/M
3300031525\|Ga0302326_11687757	Not Available	836	Open in IMG/M
3300031543\|Ga0318516_10221859	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300031549\|Ga0318571_10439850	Not Available	515	Open in IMG/M
3300031640\|Ga0318555_10175037	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300031723\|Ga0318493_10103873	Not Available	1429	Open in IMG/M
3300031736\|Ga0318501_10415231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas anticariensis → Halomonas anticariensis FP35 = DSM 16096	728	Open in IMG/M
3300031748\|Ga0318492_10427549	Not Available	698	Open in IMG/M
3300031753\|Ga0307477_10341175	Not Available	1031	Open in IMG/M
3300031753\|Ga0307477_10486439	Not Available	840	Open in IMG/M
3300031768\|Ga0318509_10654652	Not Available	584	Open in IMG/M
3300031792\|Ga0318529_10373406	Not Available	664	Open in IMG/M
3300031793\|Ga0318548_10512549	Not Available	586	Open in IMG/M
3300031797\|Ga0318550_10436660	Not Available	633	Open in IMG/M
3300031805\|Ga0318497_10232516	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300031833\|Ga0310917_10552168	Not Available	783	Open in IMG/M
3300031896\|Ga0318551_10300373	Not Available	903	Open in IMG/M
3300031896\|Ga0318551_10483759	Not Available	709	Open in IMG/M
3300031912\|Ga0306921_11263669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas anticariensis → Halomonas anticariensis FP35 = DSM 16096	819	Open in IMG/M
3300032043\|Ga0318556_10409657	Not Available	709	Open in IMG/M
3300032059\|Ga0318533_11339459	Not Available	523	Open in IMG/M
3300032060\|Ga0318505_10381763	Not Available	666	Open in IMG/M
3300032065\|Ga0318513_10608652	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300032076\|Ga0306924_11749564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	650	Open in IMG/M
3300032094\|Ga0318540_10211298	Not Available	936	Open in IMG/M
3300032160\|Ga0311301_12513387	Not Available	575	Open in IMG/M
3300032770\|Ga0335085_12548517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	506	Open in IMG/M
3300032896\|Ga0335075_11153885	Not Available	677	Open in IMG/M
3300033134\|Ga0335073_10427891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EI5c	1538	Open in IMG/M
3300033158\|Ga0335077_11264837	Not Available	719	Open in IMG/M
3300034163\|Ga0370515_0173763	Not Available	921	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.27%
Aquatic	Environmental → Aquatic	11.76%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.65%
Peat	Environmental → Terrestrial → Peat	18.63%
Freshwater	Environmental → Aquatic → Freshwater	9.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.96%
Roots	Host-Associated → Plants → Roots	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.16%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.75%
Loam	Environmental → Terrestrial → Soil → Loam	12.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.80%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.84%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.41%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	18.63%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001653	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20275J16321_1010241	3300001653	Forest Soil	PLGVSQVTAAVMALDSYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG*
JGIcombinedJ26739_1005457503	3300002245	Forest Soil	PSPLGVSQVTAAVMALDSYPTGPVDVVRIQRVANVMRQFLGFPAFDVGSMISG*
JGIcombinedJ51221_102362272	3300003505	Forest Soil	KPLGVSRVTAAVMALDTYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG*
Ga0062385_104179931	3300004080	Bog Forest Soil	DSSRAAAERAMQMLPPPLGVSRLVAAVMALDSYPFGPVDVVRIQRVADVMQQFLGGPRFNVAEMTANPAR*
Ga0062384_1002876431	3300004082	Bog Forest Soil	TNRTELEQAMEDLPMTPQPLGVSKETAALMAVDNYPVGPVDTVRLQRVADVMSQFLAFPSFNVASMVGN*
Ga0070711_1011485192	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	QQIADTSRSAVERAMEALPKPLAITPVTAAVMALDSYPVGPVDAVRIQRVADVMRQFLGFPDFNARSMIGA*
Ga0070764_101549141	3300005712	Soil	PLGVSRVTAAVMALDSYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG*
Ga0066787_100495751	3300005950	Soil	LTAPLGVSKVTAAMMALDSYPVGPVDAVRIQRVSDVMRQFLGFPAFDAKSMIGG*
Ga0070717_101141115	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VQQAMESLPAPLGVTQMTAALMVLDSYPSGPVDVVRVQRVADVMRQFLGFPTFDVGSMVSG*
Ga0070717_119620242	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	EALPKPLGLTGETAAVVALDNYPIGPVDSVRVQRVANVMRQLLGFPSFDVRSMISG*
Ga0070712_1012310192	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IADTSRSAVERAMEALPKPLAITPVTAAVMALDSYPVGPVDAVRIQRVANVMRQFLGFPDFNARSMIGG*
Ga0073928_101159355	3300006893	Iron-Sulfur Acid Spring	APLGVSRVTAAVMVLDSYPVGPVDTVRVQRVADVMRQFLGFPVFNMTTMVGG*
Ga0116133_11560422	3300009623	Peatland	VTPVTAAVMALDSYPVGPVDAVRIQRVADVMRQFLGFPDFNARAMIGG*
Ga0116133_12074081	3300009623	Peatland	NRAAVEKAMEALPAPLGLSKETAALFTLDNYPVGPVDAVRIQRVADVMRQFLRFPAFNAQSMIGG*
Ga0116223_100587501	3300009839	Peatlands Soil	PSPLGVSRLTAAVMAEDSYPVGPVDTVRIQRVADVMRQFLGFPRFTVASMISG*
Ga0126379_112754182	3300010366	Tropical Forest Soil	AMDARPKPLAITPVTAAVRALDSYPVGPVDAVRIQRVADVMRQFLGFPDFNARSMIGG*
Ga0126379_134126221	3300010366	Tropical Forest Soil	PSPLGVSPLTAAVMAVDSYPTGPVDTVRIQRVANVMRQFLGFPSFNVGSMISG*
Ga0150983_115876961	3300011120	Forest Soil	DRAAVNQAMESLPSPLGVSPVTAAVMALDSYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG*
Ga0187814_103152632	3300017932	Freshwater Sediment	LGVSRVTAAVMAVDNYPVGAVDTVRIQRVADVMRQFLGFPAFKVASMISG
Ga0187783_100799171	3300017970	Tropical Peatland	PLGLSRVTAAVMALDDYPVGPVDPARLQRVADVMRQFLGFPEFDVRSMISG
Ga0187780_109829252	3300017973	Tropical Peatland	VDQAMETLPAPLGVSSETAALMALDSYPVGPVDAVRVQRVADVMRQFLGFPTFNVTSMIG
Ga0187780_112284451	3300017973	Tropical Peatland	QAMEALPTPLGVSRVTAAVMALDSYPVGPVDGVRVQRVADVMRQFLGFPMFNVGSMIGS
Ga0187782_113214902	3300017975	Tropical Peatland	LGLTRETAAVIALDNYPVGPVDPVRVQRVADVMRQFLGFPVFDVRSMIGG
Ga0187822_101386072	3300017994	Freshwater Sediment	VEQAMEALPSPLGVSPLTAAVMALDSYPTGAVDTVRIQRVADVMRQFLGFPVFAVRSMVS
Ga0187767_103298882	3300017999	Tropical Peatland	SLPTPLGVSRETAAVMAVDSYPVGPVDTVRIQRVADVMRQFLGFPAFGVGSMIGG
Ga0187875_101561912	3300018035	Peatland	ALPAPLGVSKETAALFTLDSYPVGPVDAVRIQRVADVMRQFLRFPAFNAQSMIGG
Ga0187851_100986522	3300018046	Peatland	EALKAPLGVSKVTAAMMALDSYPVGPVDSVRIQRVANVMRQFLGFPAFDAKSMIGG
Ga0187765_108126531	3300018060	Tropical Peatland	TDRAAVEQAMEALPSPLGVSQLTAAVMALDNYPTGAVDTVRIQRVADVMRQFLGFPAFGVGSMIGG
Ga0187770_107190751	3300018090	Tropical Peatland	LGVSRETAAVMAVDSYPVGPVDTVRIQRVADVMRQFLGFPVFGVGSMIGG
Ga0066662_107741142	3300018468	Grasslands Soil	LGVTPVTAAVMALDSYPVGPVDAVRIQRVADEMRQFLGFPDFNARSMIGG
Ga0181510_12697252	3300019240	Peatland	ETVPDSLGVSRVTAAVMALDSYPTGPVDVVRIQRVADVMRQFLGFPGFDVGSMIGG
Ga0181514_12014042	3300019268	Peatland	AVEQAMETVPDSLGVSRVTAAVMALDSYPTGPVDVVRIQRVADVMRQFLGFPSFDVGSMIGG
Ga0210395_106534192	3300020582	Soil	ALPAPLGVSRVTAAMMTLDGYPVGPVDTVRIQRVADVMREFLGFPAFDARSMIGG
Ga0210400_114348091	3300021170	Soil	LPSPLGVSRVTAAVMALDNYPTGPVDAVRVQRVADVMRQFLGFPTFDVGSMVGG
Ga0210405_103680591	3300021171	Soil	LHKPLGVSRVTAAVMALDTYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG
Ga0213876_107814491	3300021384	Plant Roots	PGPLGVSGVTAAVMVLDSYPVGPVDTVRIQRVADVMRQFLGFPDFNARSMIGGVTR
Ga0213875_106259491	3300021388	Plant Roots	LHAPLGVTQGTAAMMALDNYPVGPVDTVRIQRVANVMREFLNFPVFDTRSMISN
Ga0210393_102129561	3300021401	Soil	RAAVDQAMESLPAPLGVTPVTAAVMALDSYPTGPVDVVRIQRVADVMRQFLGFPVFNVGSMIGG
Ga0210393_108905552	3300021401	Soil	PLGVSLVTAAVMALDTYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG
Ga0210385_100669181	3300021402	Soil	VSRVTAAVMALDSYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG
Ga0210385_107476032	3300021402	Soil	QSMESLPSPLGVSPVTAAVMALDNYPTGPVDAVRVQRVADVMRQFLGFPTFDVGSMVGG
Ga0210390_108741471	3300021474	Soil	AMEHIPDGLGVNKETAAIMAIDVYPVGSVDDVRLQRVADVMNQFLNFPTFNVKSMIGG
Ga0210409_105990171	3300021559	Soil	TDRSAVEQAMESLPTPLGVSQVTAAVMALDSYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG
Ga0126371_116147561	3300021560	Tropical Forest Soil	MQTLPSPLGVSPLTAAVMAVDSYPTGPVDTVRVQRVADVMRQFLGFPGFNVESMISG
Ga0242657_12518401	3300022722	Soil	LGVSPVTAAVMALDSYPTGPVDAVRVQRVADVMRQFLSFPTFDVGSMVGG
Ga0209171_104709413	3300025320	Iron-Sulfur Acid Spring	LGVSRVTAAVMVLDSYPVGPVDTVRVQRVADVMRQFLGFPVFNMTTMVGG
Ga0209167_100217401	3300027867	Surface Soil	ESLPTPLGVSPVTAAVMALDSYPTGPVDVVRIQRVADVMRQFLGFPVFNVGSMVGG
Ga0209169_105385451	3300027879	Soil	LGVSRVTAAMMALDSYPVGPVDAVRLQRVADVMKEFLGFAGFDAKSMIGG
Ga0209006_105540601	3300027908	Forest Soil	PLGVSRETSALMTLDSYPTGPVDVVRIQRVANVMRQFLGFPAFNVASMISG
Ga0302224_103399741	3300028759	Palsa	EQSMEALPTPLGVSRVTAAMMALDSYPVGSVDAVRIQRVADVMRDFLGFPAFDATSMIGG
Ga0302231_100106805	3300028775	Palsa	EQSMEALPAPLGVSRVTAAMMTLDGYPVGPVDAVRIQRVADVMREFLGFPAFDARSMIGG
Ga0308309_105208821	3300028906	Soil	SPLGVTRVTAALMALDSYPTGPVDVVRVQRVADVMRQFIGFPTFDVGSMVSG
Ga0308309_115566322	3300028906	Soil	TPLGLSRETSAVMALDSYPTGPVDVVRIQRVANVMREFLGFPAFDVGSMISG
Ga0311368_104477251	3300029882	Palsa	APLGVSRVTAAMMTLDGYPVGPVDAVRIQRVADVMREFLGFPAFNARSMIGG
Ga0311340_101618592	3300029943	Palsa	EQSMEALKAPLGVSKVTAAMMALDSYPVGPVDAVRLQRVADVMKEFLGFPAFDAKSMIGG
Ga0311340_101833331	3300029943	Palsa	APLGVSRVTAAMMTLDGYPVGPVDAVRIQRVADVMREFLGFPAFNATSMIGG
Ga0311371_121930612	3300029951	Palsa	VEQAMETVPDSLGVSRETAAVMALDSYPTGPVDAVRIQRVADVMRQFLGFPNFDVGSMIR
Ga0311339_101228931	3300029999	Palsa	SAVEQSMEALPAPLGVSRVTAAMMTLDGYPVGPVDAVRIQRVADVMREFLGFPAFDARSMIGG
Ga0311339_107568772	3300029999	Palsa	AVEQAMASLPAPLGISKGTAAMMTLDSYPVGPVDAVRIQRVADVMREFLGFPAFDASSMIGG
Ga0311338_115796371	3300030007	Palsa	QSMEALKAPLGVSKVTAAMMALDSYPVGPVDSVRIQRVANVMRQFLGFPAFDAKSMIGG
Ga0311338_118437572	3300030007	Palsa	MEALPAPVGLTTATAAMMSLDSYPVGPIDAVRIQRVADVMRQFLDFPAFDARSMLGG
Ga0302176_100254331	3300030057	Palsa	PLGVSRVTAAMMALDSYPVGSVDAVRIQRVADVMRDFLGFPAFDATSMIGG
Ga0311353_105091641	3300030399	Palsa	RSVVEQSMEALPAPLGVSRVTAAMMTLDGYPVGPVDTVRIQRVADVMREFLGFPAFDARSMIGG
Ga0311353_115043262	3300030399	Palsa	PLGLSRGTAAMMTLDNYPVGPVDAVRVQRVADVMREFLGFPAFDVKSMIGG
Ga0311372_102566971	3300030520	Palsa	ANRSVVEQSMEALPAPLGVSRVTAAMMTLDGYPVGPVDAVRIQRVADVMREFLGFPAFDARSMIGG
Ga0302316_103686801	3300030646	Palsa	ANRSAVEQSMEALPAPLGVSRVTAAMMTLDGYPVGPVDAVRIQRVADVMREFLGFPAFDARSMIGG
Ga0316363_100720331	3300030659	Peatlands Soil	PSPLGVSRLTAAVMAEDSYPVGPVDTVRIQRVADVMRQFLGFPRFTVASMISG
Ga0265461_121918441	3300030743	Soil	QQIADANRSIVEQSMEALKAPLGLSKVTAAMISLDSYPVGPVDPVRIQRVADVMREFLGFPAFDAKSMIGG
Ga0265762_11540191	3300030760	Soil	RASLEQAMEHVPDGLGVSKQTAAIMAVDVYPVGSVDNVRLQRVADVMSQFLGFPAFNVKSMIGG
Ga0302325_106157931	3300031234	Palsa	SMQALPAPLGVSRVTAAMMALDSYPVGPVDTVRIQRVADVMREFLGFPAFDAKSMIGG
Ga0302325_124590782	3300031234	Palsa	ADTDRTVVQQAMRALPAPLGLSAMTAAEMALDSYPVGPVDVVRIQRVADVMREFLGFPAFDVGSIIGG
Ga0302326_103211842	3300031525	Palsa	QQIADANRSVVEQSMEALKAPLGVSKVTAAMMALDSYPVGPVDAVRLQRVADVMKEFLGFPAFDAKSMIGG
Ga0302326_116877571	3300031525	Palsa	GVSRVTAAMMTLDGYPVGPVDTVRIQRVADVMREFLGFPAFDARSMIGG
Ga0318516_102218591	3300031543	Soil	DSSRTAVEQAMEALPSPLGVSRMTAAVMAVDSYPTGPVDTVRIQRVADVMGQFLGFPSFNVGSMISG
Ga0318571_104398502	3300031549	Soil	LGLSPVTAAVMAVDSYPVGTVDTVRIQRVADVMRQFLGFPRFNVGSMISG
Ga0318555_101750373	3300031640	Soil	ALPSPLDVSRITAAVMAVDSYPTGPVDTVRIQRVADVMRQFLGFPSFNVGSMISG
Ga0318493_101038731	3300031723	Soil	AMEALPSPLDVSRITAAVMAVDSYPTGPVDTVRIQRVADVMRQFLGFPSFNVGSMISG
Ga0318501_104152311	3300031736	Soil	MEALPSPLGVSPLTAAVMAVDSYPTGPVDTVRIQRVANVMRQFLGFPSFNVGSMTSG
Ga0318492_104275492	3300031748	Soil	EQAMQALPAPLGLSRTTAAVMALDSYPVGPVDAVRVQRVADVMRQFLSFPTFTVGSMIGG
Ga0307477_103411753	3300031753	Hardwood Forest Soil	SLPSPLGVSPVTAAVMALDNYPTGPVDAVRVQRVADVMRQFLGFPTFDAGSMVGG
Ga0307477_104864391	3300031753	Hardwood Forest Soil	VEQAMEALPSPLGVSPLTAAVMALDSYPTGTVDTVRIQRVADVMRQFLGFPTFNVESMIR
Ga0318509_106546521	3300031768	Soil	AMEALPSPLGVSPLTAAVMAVDSYPVGPVDTVRIQRVADVMRQFLGFPAFKVGSMISG
Ga0318529_103734061	3300031792	Soil	ADTSRAAVEQAMEALPSPLGLSPVTAAVMAVDSYPVGTVDTVRIQRVADVMRQFLGFPRFNVGSMISG
Ga0318548_105125491	3300031793	Soil	AIADSSRSAVEQAMEALPSPLGVSPLTAAVMAVDSYPVGPVDAVRIQRVADVMRQFLGFPAFKVGSMIRG
Ga0318550_104366602	3300031797	Soil	AMEALPSPLGLSPVTAAVMAVDSYPVGTVDTVRIQRVADVMRQFLGFPRFNVGSMISG
Ga0318497_102325163	3300031805	Soil	GVSPLTAAVMAVDSYPTGPVDTVRIQRVANVMRQFLGFPSFNVGSMISG
Ga0310917_105521681	3300031833	Soil	ALPAPLGVTKVTAALMALDSYPVGPVDTVRVQRVADVMRQFLGFPTFTVGSMTGG
Ga0318551_103003732	3300031896	Soil	VEQAMEALPSPLGLSPVTAAVMAVDSYPVGTVDTVRIQRVADVMRQFLGFPRFNVGSMIS
Ga0318551_104837591	3300031896	Soil	AVEQAMQALPAPLGLSSMTAAVMAVDSYPVGPVDAVRVQRVANVMREFLGFPSFNVGSMIGG
Ga0306921_112636691	3300031912	Soil	SPLGVSPLTAAVMAVDSYPTGPVDTVRIQRVANVMRQFLGFPAFNVGSMTSG
Ga0318556_104096571	3300032043	Soil	PSPLGVSPLTAAVMAVDSYPVGPVDTVRIQRVADVMRQFLGFPAFKVGSMIRG
Ga0318533_113394592	3300032059	Soil	PSPLGLSPVTAAVMAVDSYPVGTVDTVRIQRVADVMRQFLGFPRFNVGSMISG
Ga0318505_103817631	3300032060	Soil	QEIADSSRTAVEQAMEALPSPLGVSRMTAAVMAVDSYPTGPVDTVRIQRVADVMRQFLGFPSFNVGSMISG
Ga0318513_106086521	3300032065	Soil	APLGVTKVTAALMALDSYPVGPVDTVRVQRVADVMRQFLGFPAFTVGSMTGR
Ga0306924_117495641	3300032076	Soil	LPSPLGVSPVTAAVMAVDSYPVGPVDTVRIQRVANVMRQFLGFPAFNVGSMISG
Ga0318540_102112981	3300032094	Soil	EQAMEALPSPLGVSRMTAAVMAVDSYPTGPVDTVRIQRVADVMGQFLGFPSFNVGSMISG
Ga0311301_125133872	3300032160	Peatlands Soil	DRTAVEQAMEALPTPLGLTRETAAVIALDNYPVGPVDPVRVQRVANVMRQFLGFPLFDVRSMISG
Ga0335085_125485172	3300032770	Soil	RSSVEQALEALPAPLGVTKVTAALMALDSYPVGPVDAVRIQRVADVMRQFLGFPSFNADSMISN
Ga0335075_111538852	3300032896	Soil	SAVERAMEALPKPLAITPVTAAVMALDSYPVGPVDTVRIQRVADVMRQFLGFPDFNAQSMIDDGQG
Ga0335073_104278911	3300033134	Soil	VERAMEMLPPPLGVSPEVAAVMALDSYPFGPVDEVRIQRVADVMRQFLGGPRFGVAEMIANPGH
Ga0335077_112648372	3300033158	Soil	SAVERAMEALPQPLAITPVTAAVMALDSYPVGPVDAVRIQRVADVMRQFLGFPDFNARSMIGG
Ga0370515_0173763_710_883	3300034163	Untreated Peat Soil	MEALPAPLGVSRVTAAMMTLDGYPVGPVDTVRIQRVADVMREFLGFPAFDARSMIGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101621

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences