NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001653

3300001653: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041



Overview

Basic Information
IMG/M Taxon OID3300001653 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0085736 | Gp0057366 | Ga0003880
Sample NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9168459
Sequencing Scaffolds32
Novel Protein Genes33
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5
All Organisms → cellular organisms → Bacteria3
Not Available10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella → Chlorella variabilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter autotrophicus1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Sclerotiniaceae → Sclerotinia → Sclerotinia sclerotiorum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)N/ADepth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000496Metagenome / Metatranscriptome1076Y
F000543Metagenome / Metatranscriptome1040Y
F001206Metagenome / Metatranscriptome748Y
F001268Metagenome / Metatranscriptome734Y
F001420Metagenome / Metatranscriptome698Y
F004082Metagenome / Metatranscriptome454Y
F004500Metagenome / Metatranscriptome435Y
F004557Metagenome / Metatranscriptome433Y
F004590Metagenome / Metatranscriptome432Y
F006560Metagenome / Metatranscriptome370Y
F006905Metagenome / Metatranscriptome362Y
F009541Metagenome / Metatranscriptome316Y
F011419Metagenome / Metatranscriptome291Y
F016866Metagenome / Metatranscriptome244Y
F023477Metagenome / Metatranscriptome210Y
F025019Metagenome / Metatranscriptome203Y
F025323Metagenome / Metatranscriptome202Y
F025863Metagenome / Metatranscriptome200Y
F026726Metagenome / Metatranscriptome197Y
F029193Metagenome / Metatranscriptome189Y
F030227Metagenome / Metatranscriptome186Y
F038439Metagenome / Metatranscriptome166Y
F041930Metagenome / Metatranscriptome159Y
F043534Metagenome / Metatranscriptome156Y
F047035Metagenome / Metatranscriptome150Y
F051407Metagenome / Metatranscriptome144Y
F055067Metagenome / Metatranscriptome139Y
F069096Metagenome / Metatranscriptome124N
F073819Metagenome / Metatranscriptome120Y
F082239Metagenome / Metatranscriptome113Y
F082961Metagenome / Metatranscriptome113Y
F101101Metagenome / Metatranscriptome102Y
F101621Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20275J16321_100036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1668Open in IMG/M
JGI20275J16321_100155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1154Open in IMG/M
JGI20275J16321_100165All Organisms → cellular organisms → Bacteria1144Open in IMG/M
JGI20275J16321_100319Not Available919Open in IMG/M
JGI20275J16321_100433All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria830Open in IMG/M
JGI20275J16321_100452All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria822Open in IMG/M
JGI20275J16321_100571All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales761Open in IMG/M
JGI20275J16321_100651Not Available729Open in IMG/M
JGI20275J16321_100962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium655Open in IMG/M
JGI20275J16321_100970All Organisms → cellular organisms → Bacteria654Open in IMG/M
JGI20275J16321_100990All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia652Open in IMG/M
JGI20275J16321_101024Not Available645Open in IMG/M
JGI20275J16321_101063Not Available638Open in IMG/M
JGI20275J16321_101118All Organisms → cellular organisms → Bacteria629Open in IMG/M
JGI20275J16321_101164All Organisms → cellular organisms → Bacteria → Terrabacteria group623Open in IMG/M
JGI20275J16321_101253All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella → Chlorella variabilis607Open in IMG/M
JGI20275J16321_101308All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia599Open in IMG/M
JGI20275J16321_101327Not Available596Open in IMG/M
JGI20275J16321_101396All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii588Open in IMG/M
JGI20275J16321_101432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria582Open in IMG/M
JGI20275J16321_101459All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter autotrophicus578Open in IMG/M
JGI20275J16321_101467Not Available578Open in IMG/M
JGI20275J16321_101476Not Available577Open in IMG/M
JGI20275J16321_101482All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii576Open in IMG/M
JGI20275J16321_101511All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium572Open in IMG/M
JGI20275J16321_101548All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium567Open in IMG/M
JGI20275J16321_101670Not Available554Open in IMG/M
JGI20275J16321_101720All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia549Open in IMG/M
JGI20275J16321_101758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria546Open in IMG/M
JGI20275J16321_101807Not Available541Open in IMG/M
JGI20275J16321_101856All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Sclerotiniaceae → Sclerotinia → Sclerotinia sclerotiorum536Open in IMG/M
JGI20275J16321_102256Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20275J16321_100036JGI20275J16321_1000365F047035PVAAGAWAVVTGTLIAIWAVTAVIGVGTWLPWWLLVAIPWIWVLIRRARRRGE*
JGI20275J16321_100155JGI20275J16321_1001552F004500VTNINSDVLTAGVLTAAVLETEPWRARLGAFCPRSTFPGTSVPSAGGTGLAVVAQSVPRVRVKAVPAFPVPQSALAAQPGQINNYNHMTSVYAVGEGASGPPPYREPV*
JGI20275J16321_100165JGI20275J16321_1001652F073819VDILLAVATLVVAAAVLYVTLTLSQRIRATTGPLIDDLAGQLEATSAELRRQLEAVVSELREDREQLRLDGRRIQGRLDHADSRLTTVANQLQSEVEAVRRLSDQLGVRQLPGSRPGE*
JGI20275J16321_100319JGI20275J16321_1003192F016866MTFMSTTGQAPVPPAEPRGPLGPPLMTPGRWVALAVGVPVALALIGWTGFNLVTTVARGSYPFSYAXPVQDGQVAVNINAGDVTLQEAPGSSTARLTGTVQYGLIRPGISESNTPTGANIGMNCNGINTNCEMSASLDVPARTAVTLWSNGGNITASGFSSGIALSAAGGNVNATNLAGNLQLDSGGGDLTANGLTGTLQIATEGGNV
JGI20275J16321_100433JGI20275J16321_1004332F001268MTETISPPEAPAAESPHLARPHTDAAALRAIDEATKHLHDRAVKIRACPELHVPKLVLSEHVRGTSILDKIADGVNRFCGSMYVFIFITVGIVVWLFLGNIVGFDKTPWPLLLVILNLPQLSIMISLQVSANRSQAASDRRAIADHETLIALHEMAKQQLDILNGQDRVLAILDNFASKDMPGRQRH
JGI20275J16321_100452JGI20275J16321_1004522F000543PDVSLAGAADSVPWLVLGQLFDAFAGIRGVGFAKMTKALYPKRPALIPMLDSIVQSYLRDDDLGAHAPFAERALGFVHGYKRDLDRNWAALREVREELARSGHGLTEVRILDLLILSASAETATRPARPAGRSRSPGQPGSPGA*
JGI20275J16321_100571JGI20275J16321_1005713F101101MFERFTDKARKVVILAKGKATERGDDQIRPVHMLYGLAAADGVAAR
JGI20275J16321_100651JGI20275J16321_1006511F006905DRNREVNRFLAPLAASVHAIMRAQEIAIPYGSRLEHIAAGGVAKYPDIVKLSLDEIAAEFEGLCNRPGNE*
JGI20275J16321_100734JGI20275J16321_1007341F043534MTESSTPPGIPSPARLAAWLNDHVPGGPLELTDIQLIAGGRSNLTYRLTVSQPRAEPGAGAESTRLLV
JGI20275J16321_100962JGI20275J16321_1009621F025323MGFFSWVSSCGTVGEDEPPSLIRINEGNPAQTEVQRRAAEDVARIEQDDKYFGPPDNNDDL*
JGI20275J16321_100970JGI20275J16321_1009701F038439MASERVLEIPVRRHVLDSERPFSDVLDGIFGGISQPDIGLLFSKLEASTSYQEFSSLVAQAQG
JGI20275J16321_100990JGI20275J16321_1009902F009541VLFAGAAYVVWEHEQGRHGRPHALCPLCWLNKIVPAPEASGGSSPAEPPEQA*
JGI20275J16321_101024JGI20275J16321_1010241F101621PLGVSQVTAAVMALDSYPTGPVDVVRVQRVADVMRQFLGFPTFDVGSMVGG*
JGI20275J16321_101063JGI20275J16321_1010632F011419MPDNETFHTSFPSGPPLPPGQNVFWSAESESGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDTEMAAALNQLGLGTVSI*
JGI20275J16321_101118JGI20275J16321_1011182F055067RQSLSEELAAVAGEGAFEPSELVVPGVPEESTEPPDKPR*
JGI20275J16321_101164JGI20275J16321_1011641F029193MNPNYTYQLYQAQRVTSRAEIRAADDRRGRQAAAVSRGGRRLTRATVGRLVSRAYRRRSPSWA*
JGI20275J16321_101253JGI20275J16321_1012531F082239LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVVAVIGVAVGAAVFHPGSGAFNVAQAVEAVPGSHTIALLETERRQLIAMTDAANTKILVAKPQLASPSEVAAANPGTGTGTSTGTSTGGGGI
JGI20275J16321_101308JGI20275J16321_1013081F001206QHCPFGHALWPGQARVGWKPCICAAAREGAERGRGMGHLLVSCQSCHAQRRDATFYEPPHDIRCRQAGPWLC*
JGI20275J16321_101327JGI20275J16321_1013271F004557NPLRRTRRILLVVAGLATALLVCACDTAQQVPWATYNSQLQQQIDAATATRECAALRVYLAAAKASSSLHEKATGFPNDALVSYIQAAQQQADCPAKAD*
JGI20275J16321_101396JGI20275J16321_1013961F030227MRHLIGVALAIVMAAAVFFAASWGYLKLLSGSARGTLPAGSGSLIHDHAVLEGFGVLLAVGLLAGILMVVPIISP
JGI20275J16321_101432JGI20275J16321_1014322F082961GSQVPLGQPFSVHDPLWAWGGGRTLTGGDGSAIPTIVAGLFFDGITLLLVYILVVIVRDTPSTRSPPMSVPADADPGGVRRTQHPDRGHHGSGARRPARRGRGRH*
JGI20275J16321_101459JGI20275J16321_1014591F041930MNVLGSAAIVQSTNRAGAVSRFAAIFGAPPLHEFQIDGRDLSVSVFPGVSVLAGPASALEALTDLRATVFVRSLSEAEAELRAGGWTTEGALGDGASLLARDPDGNLLEFVENPGAPG*
JGI20275J16321_101467JGI20275J16321_1014671F001420TKNPRQDVQHAHLHAFYAEHDRTENHESSALAGHPVIAEGHRAFSAALGSDAVPVERDSTRLAAGLRAAAQPWGGSYCSCQLGVDGALWVMPALGPSQDEVNRRLARADGLQAEPDPTLGGAINLVRPTLADTGRLHAAQRATADQRASFETFVAQRGLNAQSLTAGPAPRTPPAP*
JGI20275J16321_101476JGI20275J16321_1014761F069096AMRPLSAPADVLAQPMLLPYPPELPDGLPARPRVLQLTNADDVSRGLADGTRRDRASDEEVRACLELVRASTRAIDPRARIVCAASNATATRHLDVMTASGGNTWLVRRGLDGADRALLEELDHLTDIHRMLHQPGRRHPAGPADLVILVAQDHIFARSVRRLRLLGVPTWLLVPGRLVARELFTSACAVT
JGI20275J16321_101482JGI20275J16321_1014821F025863MRKDNFPVEMVRGVPVVAAPEEIDITNAAGLRAALLEAAGL
JGI20275J16321_101511JGI20275J16321_1015112F004082VRRQPVRIVDGRVEGGYTDVFEFICPGCGDNPYVDYSEVPSRLQWLRGPLTLEAALEAYDKHLAPLPGPNGDSAGS*
JGI20275J16321_101548JGI20275J16321_1015482F026726MLGRSSPSYTVRGYSLPRVGTFSSRPRSLAARAFA
JGI20275J16321_101670JGI20275J16321_1016702F006560MTVALVLAGQPDAGLRGQLAALGVRQVDAAERAGPGLLTVAAAARAAGERVLICAGD
JGI20275J16321_101720JGI20275J16321_1017202F051407MRPLIRRLARIETVAVLVVAWLAGALGLGLATSAGAVPTVALMALGPLLGGLLLLIRHNLDLAGRIGNLASQSERTLDTV
JGI20275J16321_101758JGI20275J16321_1017581F000496RAMEPPATGRYGVGHCVIEHEELLVHNWRVTQLTRLGVPGPLAETYADRIDWHQVARLVHRGCPPRLALRIVR*
JGI20275J16321_101807JGI20275J16321_1018071F025019MFGFAGVLVAAVATGLLAGRAVRQPRLDTILWTAGTLALTVALAAQSMGFASGFGPATFRAVQL
JGI20275J16321_101856JGI20275J16321_1018561F023477MTNAELLALIERTGHPLTYEHFRTWVVAQSVRNALQTFHGGWAFDPDNPGSGEGFISDGQMRALNITIRRAVHEALRQADKARNVAAQPHRRMLYPAEQEALDFCE
JGI20275J16321_102256JGI20275J16321_1022561F004590SFAESNLPTGLSSGSPALSYLGGTAAPGTYSGAVVTATDSDGAALRGTFTLTVEANAVASSYGDEVNRFGNGFDVFRRHQYPGAIIAGWTATQGDPATDFIRTNGTHQGAFRFEYAPQGSGSGLCVSDPGGGWSSDPLRDGLVLASCNTGPWQQFIPQSNGTLKNVAT
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