NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101860

Metagenome Family F101860

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101860
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 37 residues
Representative Sequence MNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV
Number of Associated Samples 65
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Viruses
% of genes with valid RBS motifs 42.16 %
% of genes near scaffold ends (potentially truncated) 21.57 %
% of genes from short scaffolds (< 2000 bps) 75.49 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group unclassified viruses (69.608 % of family members)
NCBI Taxonomy ID 12429
Taxonomy All Organisms → Viruses → unclassified viruses

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(42.157 % of family members)
Environment Ontology (ENVO) Unclassified
(77.451 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.216 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 66.67%    β-sheet: 0.00%    Coil/Unstructured: 33.33%
Feature Viewer
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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms70.59 %
UnclassifiedrootN/A29.41 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10014077All Organisms → Viruses → unclassified viruses → Circular genetic element sp.4962Open in IMG/M
3300000101|DelMOSum2010_c10026402Not Available3271Open in IMG/M
3300000101|DelMOSum2010_c10037331All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2583Open in IMG/M
3300000101|DelMOSum2010_c10043525All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2316Open in IMG/M
3300000101|DelMOSum2010_c10123864All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1009Open in IMG/M
3300000101|DelMOSum2010_c10135435All Organisms → Viruses → unclassified viruses → Circular genetic element sp.935Open in IMG/M
3300000101|DelMOSum2010_c10147707All Organisms → Viruses → unclassified viruses → Circular genetic element sp.868Open in IMG/M
3300000115|DelMOSum2011_c10021589All Organisms → Viruses → unclassified viruses → Circular genetic element sp.3038Open in IMG/M
3300000115|DelMOSum2011_c10032109All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2304Open in IMG/M
3300001450|JGI24006J15134_10072722All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1313Open in IMG/M
3300005078|Ga0070770_10217030All Organisms → Viruses → unclassified viruses → Circular genetic element sp.981Open in IMG/M
3300005078|Ga0070770_10226702All Organisms → Viruses → unclassified viruses → Circular genetic element sp.740Open in IMG/M
3300005086|Ga0072334_10443291All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1612Open in IMG/M
3300005882|Ga0080455_1029327Not Available2428Open in IMG/M
3300005882|Ga0080455_1029726All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2399Open in IMG/M
3300005882|Ga0080455_1102836All Organisms → Viruses → unclassified viruses → Circular genetic element sp.738Open in IMG/M
3300005882|Ga0080455_1113352Not Available673Open in IMG/M
3300006165|Ga0075443_10247790All Organisms → Viruses → unclassified viruses → Circular genetic element sp.646Open in IMG/M
3300006637|Ga0075461_10214325All Organisms → Viruses → unclassified viruses → Circular genetic element sp.573Open in IMG/M
3300007896|Ga0111484_1007552All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2441Open in IMG/M
3300007896|Ga0111484_1046003All Organisms → Viruses → unclassified viruses → Circular genetic element sp.897Open in IMG/M
3300007907|Ga0111546_101475All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2372Open in IMG/M
3300007907|Ga0111546_102921All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1668Open in IMG/M
3300009071|Ga0115566_10339592All Organisms → Viruses → unclassified viruses → Circular genetic element sp.877Open in IMG/M
3300009149|Ga0114918_10143692All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1431Open in IMG/M
3300009149|Ga0114918_10294935All Organisms → Viruses → unclassified viruses → Circular genetic element sp.908Open in IMG/M
3300009420|Ga0114994_10219635All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1277Open in IMG/M
3300009420|Ga0114994_10490631All Organisms → Viruses → unclassified viruses → Circular genetic element sp.810Open in IMG/M
3300009420|Ga0114994_10838074Not Available597Open in IMG/M
3300009425|Ga0114997_10141051All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1432Open in IMG/M
3300009425|Ga0114997_10209960Not Available1115Open in IMG/M
3300009425|Ga0114997_10225467All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1066Open in IMG/M
3300009433|Ga0115545_1168828All Organisms → Viruses → unclassified viruses → Circular genetic element sp.757Open in IMG/M
3300009505|Ga0115564_10477060All Organisms → Viruses → unclassified viruses → Circular genetic element sp.603Open in IMG/M
3300009705|Ga0115000_11032166Not Available501Open in IMG/M
3300010296|Ga0129348_1308195All Organisms → Viruses → unclassified viruses → Circular genetic element sp.528Open in IMG/M
3300011258|Ga0151677_1012028Not Available2367Open in IMG/M
3300012953|Ga0163179_10295250All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1280Open in IMG/M
3300017697|Ga0180120_10330326All Organisms → Viruses → unclassified viruses → Circular genetic element sp.606Open in IMG/M
3300017709|Ga0181387_1031924All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1033Open in IMG/M
3300017710|Ga0181403_1034551All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1064Open in IMG/M
3300017713|Ga0181391_1118086Not Available595Open in IMG/M
3300017714|Ga0181412_1085674Not Available753Open in IMG/M
3300017720|Ga0181383_1042581All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1220Open in IMG/M
3300017720|Ga0181383_1068534Not Available953Open in IMG/M
3300017726|Ga0181381_1045249All Organisms → Viruses → unclassified viruses → Circular genetic element sp.971Open in IMG/M
3300017728|Ga0181419_1012494All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2467Open in IMG/M
3300017728|Ga0181419_1079198All Organisms → Viruses → unclassified viruses → Circular genetic element sp.823Open in IMG/M
3300017729|Ga0181396_1005715Not Available2520Open in IMG/M
3300017730|Ga0181417_1010097All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2437Open in IMG/M
3300017731|Ga0181416_1011214All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium2128Open in IMG/M
3300017731|Ga0181416_1059709All Organisms → Viruses → unclassified viruses → Circular genetic element sp.901Open in IMG/M
3300017733|Ga0181426_1005504All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2480Open in IMG/M
3300017733|Ga0181426_1005567All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2467Open in IMG/M
3300017735|Ga0181431_1154389Not Available510Open in IMG/M
3300017737|Ga0187218_1025002All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1548Open in IMG/M
3300017737|Ga0187218_1149635All Organisms → Viruses → unclassified viruses → Circular genetic element sp.552Open in IMG/M
3300017738|Ga0181428_1051759Not Available956Open in IMG/M
3300017738|Ga0181428_1147423All Organisms → Viruses → unclassified viruses → Circular genetic element sp.550Open in IMG/M
3300017739|Ga0181433_1124075All Organisms → Viruses → unclassified viruses → Circular genetic element sp.617Open in IMG/M
3300017744|Ga0181397_1109140Not Available724Open in IMG/M
3300017757|Ga0181420_1097449All Organisms → Viruses → unclassified viruses → Circular genetic element sp.907Open in IMG/M
3300017757|Ga0181420_1178326All Organisms → Viruses → unclassified viruses → Circular genetic element sp.625Open in IMG/M
3300017760|Ga0181408_1003523Not Available4620Open in IMG/M
3300017760|Ga0181408_1048085All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1145Open in IMG/M
3300017760|Ga0181408_1173103All Organisms → Viruses → unclassified viruses → Circular genetic element sp.552Open in IMG/M
3300017764|Ga0181385_1151593All Organisms → Viruses → unclassified viruses → Circular genetic element sp.704Open in IMG/M
3300017765|Ga0181413_1014060Not Available2495Open in IMG/M
3300017765|Ga0181413_1018947Not Available2157Open in IMG/M
3300017765|Ga0181413_1143418Not Available721Open in IMG/M
3300017772|Ga0181430_1165607Not Available639Open in IMG/M
3300017773|Ga0181386_1081884Not Available1016Open in IMG/M
3300017773|Ga0181386_1259487Not Available513Open in IMG/M
3300017775|Ga0181432_1008716All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2426Open in IMG/M
3300017776|Ga0181394_1196227All Organisms → Viruses → unclassified viruses → Circular genetic element sp.616Open in IMG/M
3300017779|Ga0181395_1095257All Organisms → Viruses → unclassified viruses → Circular genetic element sp.955Open in IMG/M
3300017781|Ga0181423_1024497All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2462Open in IMG/M
3300017782|Ga0181380_1075368All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1184Open in IMG/M
3300017783|Ga0181379_1016683All Organisms → Viruses → unclassified viruses → Circular genetic element sp.3012Open in IMG/M
3300017786|Ga0181424_10201966All Organisms → Viruses → unclassified viruses → Circular genetic element sp.842Open in IMG/M
3300017786|Ga0181424_10424150All Organisms → Viruses → unclassified viruses → Circular genetic element sp.539Open in IMG/M
3300018420|Ga0181563_10095749All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1953Open in IMG/M
3300022046|Ga0224897_100113All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2039Open in IMG/M
(restricted) 3300023210|Ga0233412_10553375Not Available522Open in IMG/M
3300024262|Ga0210003_1072205All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1658Open in IMG/M
3300025138|Ga0209634_1029045Not Available2953Open in IMG/M
3300025138|Ga0209634_1236277All Organisms → Viruses → unclassified viruses → Circular genetic element sp.671Open in IMG/M
3300025138|Ga0209634_1243686Not Available655Open in IMG/M
3300025632|Ga0209194_1065263All Organisms → Viruses → unclassified viruses → Circular genetic element sp.996Open in IMG/M
3300025810|Ga0208543_1062803All Organisms → Viruses → unclassified viruses → Circular genetic element sp.905Open in IMG/M
3300025816|Ga0209193_1124425All Organisms → Viruses → unclassified viruses → Circular genetic element sp.620Open in IMG/M
3300025849|Ga0209603_1347988All Organisms → Viruses → unclassified viruses → Circular genetic element sp.502Open in IMG/M
3300027779|Ga0209709_10089274All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1647Open in IMG/M
3300027779|Ga0209709_10098625All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1536Open in IMG/M
3300027779|Ga0209709_10099991Not Available1521Open in IMG/M
3300027779|Ga0209709_10345333Not Available613Open in IMG/M
3300028598|Ga0265306_10198889All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1062Open in IMG/M
3300028600|Ga0265303_10189106All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1569Open in IMG/M
3300028600|Ga0265303_10542918Not Available938Open in IMG/M
3300031252|Ga0307494_1033721Not Available561Open in IMG/M
3300031519|Ga0307488_10706378Not Available570Open in IMG/M
3300033742|Ga0314858_103904Not Available721Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater42.16%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine14.71%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine8.82%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine5.88%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment3.92%
WaterEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Water3.92%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface2.94%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment2.94%
WaterEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Water2.94%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.96%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.96%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.96%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.98%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.98%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.98%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.98%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.98%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300005078Microbial Community from Halfdan Field MHBA5EnvironmentalOpen in IMG/M
3300005086Microbial Community from Halfdan Field MHDA3EnvironmentalOpen in IMG/M
3300005882Hydrocarbon microbial community from Halfdan Field MHFEnvironmentalOpen in IMG/M
3300006165Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300007896Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_3EnvironmentalOpen in IMG/M
3300007907Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300011258Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeateEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017730Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017733Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017737Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300022046Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29 (v2)EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300028598Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300028600Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300031252Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1001407723300000101MarineMSDSMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV*
DelMOSum2010_1002640263300000101MarineMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV*
DelMOSum2010_1003733133300000101MarineLNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV*
DelMOSum2010_1004352523300000101MarineMSDTMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGTV*
DelMOSum2010_1012386443300000101MarineMSDSMNDDVEKTLADPKHPIWKIMLGLVAVLSALRMNGTV*
DelMOSum2010_1013543523300000101MarineMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV*
DelMOSum2010_1014770733300000101MarineMSDTMNDDVEKTLADPKHPIWKIMLGLVAILSALWMNGTV*
DelMOSum2011_1002158953300000115MarineLNDDVEKTLADPKHPIWKVMLGLVAILSALWMNGTV*
DelMOSum2011_1003210963300000115MarineMSDSMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGTV*
JGI24006J15134_1007272223300001450MarineMINMNDDVEKTLADPKHPIWKIMLGLVAVLSALWINGN*
Ga0070770_1021703023300005078WaterVITMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGTV*
Ga0070770_1022670243300005078WaterCVIFMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV*
Ga0072334_1044329153300005086WaterMSDTMNDEVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV*
Ga0080455_102932743300005882WaterMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV*
Ga0080455_102972643300005882WaterMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGSV*
Ga0080455_110283633300005882WaterMNDDVEKTLADPKHPIYKICLGLIALLSALWMNGSV*
Ga0080455_111335233300005882WaterDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV*
Ga0075443_1024779023300006165MarineMNDDVEKTLADPKHPIWKVMLGLVAVLSALWINGN*
Ga0075461_1021432523300006637AqueousMINMNDDVEKTLADPKHPIWKVMLGLVAILSALWMNNTV*
Ga0111484_100755223300007896SedimentMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGTV*
Ga0111484_104600323300007896SedimentMSDSMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNSN*
Ga0111546_10147533300007907SedimentMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGSV*
Ga0111546_10292123300007907SedimentMNDDVEKTLADPKHPIYKICLGLIALLSALWINSN*
Ga0115566_1033959213300009071Pelagic MarineSKIIMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGSV*
Ga0114918_1014369243300009149Deep SubsurfaceMINMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGSV*
Ga0114918_1029493523300009149Deep SubsurfaceMLIKMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV*
Ga0114994_1021963513300009420MarineMSDDSVEKTLADPKHPIWKVMLGLVAVLSAIWIQAN*
Ga0114994_1049063133300009420MarineMNDDVEKTLADPKHPIWKIMLGLVAVLSALWINGN*
Ga0114994_1083807433300009420MarineMSDDSVEKTLADPKHPIWKVMLGLVAVLSAIWINSN*
Ga0114997_1014105153300009425MarineMNDDVEKTLADPKHPIWKIMLGLVAILSALWIQAN*
Ga0114997_1020996023300009425MarineMNDDVEKTLADPKHPIWKIMLGLVAVLSALWINSN*
Ga0114997_1022546723300009425MarineMNDDVEKTLADPKHPIWKVMLGLVAVLSALWINSN*
Ga0115545_116882813300009433Pelagic MarineLIMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGSV*
Ga0115564_1047706023300009505Pelagic MarineMNDEVEKTLADPKHPIWKIMLGLVAVLSALWMNGTV*
Ga0115000_1103216623300009705MarineMSDDSVEKTLADPKHPIWKAMLGLVAVLSAIWIQAN*
Ga0129348_130819523300010296Freshwater To Marine Saline GradientMSDTMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNNTV*
Ga0151677_101202843300011258MarineMINMNDEVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV*
Ga0163179_1029525023300012953SeawaterMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNNSV*
Ga0180120_1033032623300017697Freshwater To Marine Saline GradientMSDTMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGTV
Ga0181387_103192423300017709SeawaterMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV
Ga0181403_103455123300017710SeawaterMDDDLEKTLADPKHPIWKVMLGLVAVLSALWMNNTV
Ga0181391_111808633300017713SeawaterIMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV
Ga0181412_108567413300017714SeawaterMNDDVEKTLADPKHPIWNVMLGLVAVLSALWMNNTV
Ga0181383_104258113300017720SeawaterGRIRMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV
Ga0181383_106853423300017720SeawaterMNNDVEKTLADPKHPIWKIMLGLVAILSALWINGN
Ga0181381_104524933300017726SeawaterLNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNSTV
Ga0181419_101249423300017728SeawaterMSDTMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV
Ga0181419_107919813300017728SeawaterTRWPTVNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV
Ga0181396_100571513300017729SeawaterRRYIMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV
Ga0181417_101009713300017730SeawaterMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNST
Ga0181416_101121443300017731SeawaterMNDDVEKTLADPKHPIWKVMLGLVAVLSALWINSTV
Ga0181416_105970913300017731SeawaterMNDDVEKTLADPKYPIWKVMLGLVAVLSALWMNSTV
Ga0181426_100550443300017733SeawaterVNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV
Ga0181426_100556773300017733SeawaterMSDIMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV
Ga0181431_115438913300017735SeawaterVIEMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNSTV
Ga0187218_102500253300017737SeawaterMDDDVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV
Ga0187218_114963513300017737SeawaterIIMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGSV
Ga0181428_105175933300017738SeawaterMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNNTV
Ga0181428_114742323300017738SeawaterMNDDVEKTLADPKHPIWKAILGLVALLSALWMNNTV
Ga0181433_112407523300017739SeawaterLNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGSV
Ga0181397_110914033300017744SeawaterMNDDVEKTLADPKHPIWKVMLGLVEVLSALWMNSTV
Ga0181420_109744913300017757SeawaterIKVLNDMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV
Ga0181420_117832623300017757SeawaterSLNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV
Ga0181408_1003523123300017760SeawaterMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSSV
Ga0181408_104808523300017760SeawaterMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMYNTV
Ga0181408_117310323300017760SeawaterMSDIMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV
Ga0181385_115159333300017764SeawaterMLIKMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGSV
Ga0181413_101406043300017765SeawaterMNDNVEKTLADPKHPIWKIMLGLVAVLSALWMNNTV
Ga0181413_101894713300017765SeawaterIKMSDTMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV
Ga0181413_114341823300017765SeawaterMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTI
Ga0181430_116560713300017772SeawaterMLQAIRMNDDVEKTLADPKHPIWKIMLGLVAVLSALWINGN
Ga0181386_108188413300017773SeawaterMLINMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV
Ga0181386_125948733300017773SeawaterNDDVEKTLADPKHPIYKVMLAMIALLSALWMNNTV
Ga0181432_100871643300017775SeawaterMSDSMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGSV
Ga0181394_119622713300017776SeawaterNKSKIIMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV
Ga0181395_109525713300017779SeawaterSKIIMNDDVEKTLADPKHPRWKVMLGLVAVLSALWMNNTV
Ga0181423_102449793300017781SeawaterRWPTVNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNSTV
Ga0181380_107536833300017782SeawaterLNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNNTV
Ga0181379_101668383300017783SeawaterMLINMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGSV
Ga0181424_1020196613300017786SeawaterLNDDIEKTLADPKHPIWKVMLGLVAVLSALWMNGTV
Ga0181424_1042415023300017786SeawaterMNDDVEKTLADPKHPIWKVMLGLVGILSALWINGTV
Ga0181563_1009574933300018420Salt MarshMLINMNDDVEKTLADPKHPIWKVMLGLVAILSALWMNNTV
Ga0224897_10011333300022046SeawaterMNDDVEKTLADPKHPIWKVILGLVAVLSALWMNNTV
(restricted) Ga0233412_1055337523300023210SeawaterMNDDVEKTLADPKHPIWKVMLGLVAVLSALWINGN
Ga0210003_107220543300024262Deep SubsurfaceMINMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGSV
Ga0209634_102904563300025138MarineMINMNDDVEKTLADPKHPIWKVMLGLVAVLSALWINGN
Ga0209634_123627733300025138MarineMDDDVEKTLADPKHPIWKIMLGLVAVLSALWINGN
Ga0209634_124368613300025138MarineYKMINMNDDVEKTLADPKHPIWKVMLGLVAVLSAIWINGN
Ga0209194_106526313300025632Pelagic MarineLNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGTV
Ga0208543_106280323300025810AqueousMINMNDDVEKTLADPKHPIWKVMLGLVAILSALWMNNTV
Ga0209193_112442533300025816Pelagic MarineMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGTV
Ga0209603_134798823300025849Pelagic MarineMNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGSV
Ga0209709_1008927423300027779MarineMSDDSVEKTLADPKHPIWKVMLGLVAVLSAIWIQAN
Ga0209709_1009862553300027779MarineMNDDVEKTLADPKHPIWKIMLGLVAILSALWIQAN
Ga0209709_1009999153300027779MarineIIMNDDVEKTLADPKHPIWKICLGLVAILSALWINSN
Ga0209709_1034533333300027779MarineMSDDSVEKTLADPKHPIWKVMLGLVAVLSAIWINSN
Ga0265306_1019888923300028598SedimentMNDDVEKTLADPKHPIWKIMLGLVAVLSALWMNGSV
Ga0265303_1018910643300028600SedimentMNDDVEKTLADPKHPIWKIMLGLVAILSALWMNGSV
Ga0265303_1054291853300028600SedimentMNDDVEKTLADPKHPIWKVMLGLIAVLSALWMNSTV
Ga0307494_103372123300031252Sackhole BrineMNDDVEKTLADPKHPIWKVMLGLVAVLSAIWINGN
Ga0307488_1070637833300031519Sackhole BrineATHQFKMINMNDDVEKTLADPKHPIWKVMLGLVTVLSAIWINGN
Ga0314858_103904_512_6283300033742Sea-Ice BrineMIDMNDDVEKTLADPKHPIWKVMLGLVAVLSALWINGN

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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