NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007907

3300007907: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3



Overview

Basic Information
IMG/M Taxon OID3300007907 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118143 | Gp0131536 | Ga0111546
Sample NameMicrobial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Liverpool
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41611655
Sequencing Scaffolds19
Novel Protein Genes23
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.5
All Organisms → Viruses → Predicted Viral2
All Organisms → Viruses → unclassified viruses → Virus sp.2
All Organisms → Viruses2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. MJC11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationUnited Kingdom
CoordinatesLat. (o)54.9632021Long. (o)-1.6348029Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F002192Metagenome / Metatranscriptome585Y
F003678Metagenome / Metatranscriptome474Y
F006143Metagenome380Y
F009106Metagenome / Metatranscriptome323Y
F013592Metagenome270Y
F021528Metagenome / Metatranscriptome218N
F024216Metagenome / Metatranscriptome207Y
F025033Metagenome203N
F043408Metagenome156N
F051104Metagenome / Metatranscriptome144Y
F059349Metagenome / Metatranscriptome134Y
F088780Metagenome109Y
F088833Metagenome109N
F101860Metagenome102N
F104571Metagenome / Metatranscriptome100N
F106095Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111546_101008Not Available2996Open in IMG/M
Ga0111546_101475All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2372Open in IMG/M
Ga0111546_101514All Organisms → Viruses → Predicted Viral2327Open in IMG/M
Ga0111546_101525All Organisms → Viruses → unclassified viruses → Virus sp.2317Open in IMG/M
Ga0111546_101528All Organisms → Viruses → unclassified viruses → Virus sp.2316Open in IMG/M
Ga0111546_101764All Organisms → Viruses2138Open in IMG/M
Ga0111546_101902All Organisms → Viruses → Predicted Viral2059Open in IMG/M
Ga0111546_102054Not Available1977Open in IMG/M
Ga0111546_102265All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1890Open in IMG/M
Ga0111546_102269All Organisms → cellular organisms → Bacteria1889Open in IMG/M
Ga0111546_102523All Organisms → Viruses1801Open in IMG/M
Ga0111546_102921All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1668Open in IMG/M
Ga0111546_103073Not Available1619Open in IMG/M
Ga0111546_104393All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1321Open in IMG/M
Ga0111546_104741All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1269Open in IMG/M
Ga0111546_105534All Organisms → cellular organisms → Archaea1166Open in IMG/M
Ga0111546_106888All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. MJC11034Open in IMG/M
Ga0111546_107755All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium970Open in IMG/M
Ga0111546_122175Not Available514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111546_101008Ga0111546_1010088F006143MSDEENPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGAT
Ga0111546_101475Ga0111546_1014753F101860MNDDVEKTLADPKHPIWKVMLGLVAVLSALWMNGSV*
Ga0111546_101514Ga0111546_1015142F104571MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETNEHNLFRKDNGKWVTGAKAYVNTGDYQLTIKPIISNGNRNGKVLLFLQTSLPKIIHGENFQALNNDETVQAIDAIAGDLQDRGVGVNLQDCKTSRIDVFRTAIADNPFSSYAPVFRLLSAKRSHTTDYGTTFTWANTQREICVYDKGTEMRNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYAKRYGGAFVNRFYRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKLFDEYRMNFEMARGGLGDNTLKDFYLELKEKILPDNRCETGDLMTV
Ga0111546_101525Ga0111546_1015252F000613MPLVKKRLSIAAGATSDQVLAGSTYEYVDPGTRLVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSAIVTGEPFGWNGNYVMNDMVTTGQVRNRPVITFTNGTSATRTVDVAVFIGG*
Ga0111546_101525Ga0111546_1015253F106095MSFLSNLIKKAAPVVATVAPGTPIGEAARVVTVAQQQQERKYQKKLAIDAQAARQREINNMEFRDTDALNRTIYGNTGGTLPTVRQGFGSSFGTFLGDVGQNILNPLSGLFSQVRPFISQQSVGQPALSTRSTIGGQESQQSGVTQGFMGGFGNLAGQASRFLRTPGGQIGTGLLTGIGASMLSGGNGGMRITRKMKSQYRAVLNLAQGDYDQAAAMIGVSTDQFIAVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRASTTLISNK*
Ga0111546_101525Ga0111546_1015254F003678MDQFMLYAPLIIASIALFLCLYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGSIKNVGG*
Ga0111546_101528Ga0111546_1015281F059349VVNMGQEFTIKSETVEAKINQLLPSQGGYGAGVDISASTMIVPIIDLTETASGSVLREDLQRSVSKTGSTFQARNSTASLS
Ga0111546_101528Ga0111546_1015284F002192MYQFLLYSSIFVALLSFFMCLYACARVGGFINSTKGLDWDAIANITGDLATTKKTLQTLNNRLNGMHSPKQDEAHLMMQLLQSQNAKPNGTIKNVGG*
Ga0111546_101764Ga0111546_1017643F006143VIIMEEELEQKKTPTTKFAEWLMARAEKKEEKETSLESLMKFNVFLSIATLVTVAGATVADYILMAWTWI*
Ga0111546_101902Ga0111546_1019026F006143MTEEQNPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGAT
Ga0111546_102054Ga0111546_1020542F009106MKRTLRDAFDRWKDALIEQDKQITRAARHRAHARVTSMEDLIAETPADDIEGVGIKLALYVYMSGVDPETADSAVEQVLSAYKDCVRVLGRDPLAEVRSLMPACQEGV*
Ga0111546_102265Ga0111546_1022653F025033MRGGIGMNRRIKRNRAVPIHITLAPGLLDEIDARLSHKMSRSNWIRGACEMKLDKDVTEVNELTDKQLVNILRNRHNYDGPAEAILKSLLEVLSE*
Ga0111546_102269Ga0111546_1022691F051104LFELRIAEAIEEEAVLSQNLIEEGFNHAFKAGELLQEVKSMLSSEEELEQWLQENCSKVEKGVASSCLRLFNGETVKVEATLKREENHKR
Ga0111546_102269Ga0111546_1022692F021528MIDTLKLMLNEYQITDDSEIRVQPASYELGTGSKVEYPLFQTPSHGSFYGSKAYLNAENWNLTLKPLPGGRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLSKVEGELKEKGVHTPLIEADMSRVDTFKNIEPEEPFSSYYTLFSLLKARRAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETGGLPPTMRFEHRLLNKQKIQNVYGMSKVGELFKGGYEVVKEKQVESWKASLFNFTTEEFVLLGSKQLEQEMKKFKEKFPTGWFSRFLKAYGAYYLASHAGKEVVIEALKNAEAERTMIWRAVQIFEEAERELLVLKQEEGSKKTLGALYEELRRKVCLN*
Ga0111546_102523Ga0111546_1025234F025033MNRRIKRNRAVPIHITLAPSLLDEIDSRLSHKMSRSNWIRGACEMKLDKDVTEVSDLTSKQLVNILRNRIDYDGPAESILKSLLEVLSE*
Ga0111546_102921Ga0111546_1029212F101860MNDDVEKTLADPKHPIYKICLGLIALLSALWINSN*
Ga0111546_103073Ga0111546_1030733F043408MKVRKEVSLTVETAQIANKMNNFSQWVRIGLRQYQHGEDVASETMRRMRWAKAAHMLASTLLEHALEIDPDYKGDVQTIIAKAMNQTTLEEFE*
Ga0111546_104393Ga0111546_1043932F025033MDLDMRDLLLWHSFGRGGTMNRRIKRNRAVPIHITLAPTLLDEIDAQLSHKMSRSNWIRGACEMKLDKDVTEVNDLTDKQLVNILRNRHSYDGPAEAILKSLLEVLSE*
Ga0111546_104741Ga0111546_1047413F025033MNRRIKRNRSVPIHITLPPALLDDIDAQLSHKMSRSNWIRGACDLKLGKDVTEVADLTDIQLVNVLRNRFNYEGPGEAILKSLLEIL
Ga0111546_105534Ga0111546_1055342F088780MNLIKKFTWGLTVVAMAPLCGLENKERNRRLEDRLKRIENRDLA*
Ga0111546_106888Ga0111546_1068882F024216MAEKTFPATVHVYFDNVNSESYQTFLAYCDRLEYKYDVEMGKSIDVRRSMKPRIVTGEPRIITDEME*
Ga0111546_107755Ga0111546_1077552F013592MLIDMALAPELIWLEEVLFEDSVIPLSTLAKFHPIIRIPVIAYQAADIVGTELAIRTIEAGGVGALDIFTPEIRRYEDTALVGLGGRII*
Ga0111546_122175Ga0111546_1221751F088833LESLMKFNVFLSIATLVSVAGATVADYVLMAWLWV*
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