Metagenome / Metatranscriptome Family F104088

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104088
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	66 residues
Representative Sequence	SQLHQQKRIQPLPAFGYAGVAVKAKRKALLALLRKGLRSNRLAFPSHNGAVEWPEIQLIKKTA
Number of Associated Samples	81
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.91 %
% of genes near scaffold ends (potentially truncated)	92.08 %
% of genes from short scaffolds (< 2000 bps)	85.15 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.109 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.861 % of family members)
Environment Ontology (ENVO)	Unclassified (24.752 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.327 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.58% β-sheet: 0.00% Coil/Unstructured: 82.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01381	HTH_3	9.90
PF13545	HTH_Crp_2	4.95
PF13305	TetR_C_33	3.96
PF13560	HTH_31	2.97
PF04952	AstE_AspA	2.97
PF04255	DUF433	1.98
PF06742	DUF1214	0.99
PF07733	DNA_pol3_alpha	0.99
PF00027	cNMP_binding	0.99
PF02371	Transposase_20	0.99
PF13784	Fic_N	0.99
PF01850	PIN	0.99
PF01758	SBF	0.99
PF00436	SSB	0.99
PF02687	FtsX	0.99
PF07726	AAA_3	0.99
PF01548	DEDD_Tnp_IS110	0.99
PF12844	HTH_19	0.99
PF02899	Phage_int_SAM_1	0.99
PF00561	Abhydrolase_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.98
COG0587	DNA polymerase III, alpha subunit	Replication, recombination and repair [L]	0.99
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.99
COG2176	DNA polymerase III, alpha subunit (gram-positive type)	Replication, recombination and repair [L]	0.99
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.99
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.99
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.99
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.99
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.11 %
Unclassified	root	N/A	10.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.11 %
Unclassified	root	N/A	10.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.11 %
Unclassified	root	N/A	10.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	48.51 %
Unclassified	root	N/A	10.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.90 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	44.55 %
Unclassified	root	N/A	10.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.55 %
Unclassified	root	N/A	10.89 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.99 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.55 %
Unclassified	root	N/A	10.89 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.99 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.99 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.55 %
Unclassified	root	N/A	10.89 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.99 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.99 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.55 %
Unclassified	root	N/A	10.89 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.99 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.99 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001385\|JGI20193J14888_1016522	All Organisms → cellular organisms → Bacteria → Proteobacteria	1305	Open in IMG/M
3300001396\|JGI20175J14863_1013282	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1200	Open in IMG/M
3300003219\|JGI26341J46601_10024049	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1992	Open in IMG/M
3300003368\|JGI26340J50214_10165539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300003369\|JGI24140J50213_10187867	Not Available	648	Open in IMG/M
3300004080\|Ga0062385_10029715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2174	Open in IMG/M
3300006052\|Ga0075029_100221356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1187	Open in IMG/M
3300006055\|Ga0097691_1081209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1001	Open in IMG/M
3300006642\|Ga0075521_10147868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1100	Open in IMG/M
3300006642\|Ga0075521_10279868	Not Available	801	Open in IMG/M
3300006642\|Ga0075521_10391215	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300006795\|Ga0075520_1148842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300008786\|Ga0103639_1001584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300010339\|Ga0074046_10719321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300010341\|Ga0074045_10131332	All Organisms → cellular organisms → Bacteria	1713	Open in IMG/M
3300010341\|Ga0074045_10152951	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300010343\|Ga0074044_10353800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300010359\|Ga0126376_13125606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300010376\|Ga0126381_100201874	All Organisms → cellular organisms → Bacteria → Acidobacteria	2659	Open in IMG/M
3300010379\|Ga0136449_104611113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300012198\|Ga0137364_10749814	Not Available	737	Open in IMG/M
3300012931\|Ga0153915_10019446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6669	Open in IMG/M
3300014156\|Ga0181518_10052216	All Organisms → cellular organisms → Bacteria	2452	Open in IMG/M
3300014156\|Ga0181518_10380220	Not Available	686	Open in IMG/M
3300014165\|Ga0181523_10504104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300014199\|Ga0181535_10381023	Not Available	829	Open in IMG/M
3300014489\|Ga0182018_10760078	Not Available	503	Open in IMG/M
3300014657\|Ga0181522_10896836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300014838\|Ga0182030_11659657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300016270\|Ga0182036_10182027	All Organisms → cellular organisms → Bacteria → Proteobacteria	1525	Open in IMG/M
3300016294\|Ga0182041_11755077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300016319\|Ga0182033_10254423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1428	Open in IMG/M
3300016422\|Ga0182039_10449069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1104	Open in IMG/M
3300017931\|Ga0187877_1381997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300017932\|Ga0187814_10359467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300017935\|Ga0187848_10040208	All Organisms → cellular organisms → Bacteria	2302	Open in IMG/M
3300018033\|Ga0187867_10060092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2265	Open in IMG/M
3300019787\|Ga0182031_1023026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1480	Open in IMG/M
3300019787\|Ga0182031_1092926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1253	Open in IMG/M
3300025457\|Ga0208850_1078819	Not Available	529	Open in IMG/M
3300025481\|Ga0208079_1010085	All Organisms → cellular organisms → Bacteria → Proteobacteria	3452	Open in IMG/M
3300025619\|Ga0207926_1084856	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300026890\|Ga0207781_1011726	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300026890\|Ga0207781_1016233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300026909\|Ga0207858_1007247	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300026921\|Ga0207860_1010441	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300026921\|Ga0207860_1014050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300027014\|Ga0207815_1004012	All Organisms → cellular organisms → Bacteria	2059	Open in IMG/M
3300027063\|Ga0207762_1059436	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300027698\|Ga0209446_1011585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2161	Open in IMG/M
3300027703\|Ga0207862_1042261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1373	Open in IMG/M
3300027824\|Ga0209040_10166043	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300027824\|Ga0209040_10232852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	934	Open in IMG/M
3300027824\|Ga0209040_10341323	Not Available	714	Open in IMG/M
3300027825\|Ga0209039_10015753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	4039	Open in IMG/M
3300027825\|Ga0209039_10086900	All Organisms → cellular organisms → Bacteria → Proteobacteria	1358	Open in IMG/M
3300027825\|Ga0209039_10327654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300027825\|Ga0209039_10342855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300027825\|Ga0209039_10369993	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300028646\|Ga0302159_10024246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1344	Open in IMG/M
3300028678\|Ga0302165_10026360	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300028679\|Ga0302169_10185434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300028868\|Ga0302163_10045469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300028909\|Ga0302200_10224374	Not Available	930	Open in IMG/M
3300028909\|Ga0302200_10386196	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300029923\|Ga0311347_10503168	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300029939\|Ga0311328_10565010	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300029984\|Ga0311332_10245662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1358	Open in IMG/M
3300030001\|Ga0302272_1192501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300031028\|Ga0302180_10067138	All Organisms → cellular organisms → Bacteria	2119	Open in IMG/M
3300031241\|Ga0265325_10042339	All Organisms → cellular organisms → Bacteria → Proteobacteria	2382	Open in IMG/M
3300031524\|Ga0302320_11613350	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031546\|Ga0318538_10222239	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300031708\|Ga0310686_108850905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300031719\|Ga0306917_10637442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	838	Open in IMG/M
3300031719\|Ga0306917_10682344	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300031744\|Ga0306918_11055895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300031748\|Ga0318492_10510557	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031796\|Ga0318576_10345784	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300031846\|Ga0318512_10744074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300031879\|Ga0306919_10091144	All Organisms → cellular organisms → Bacteria	2124	Open in IMG/M
3300031890\|Ga0306925_11919590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300031910\|Ga0306923_11145450	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300031912\|Ga0306921_11185362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300031918\|Ga0311367_11974760	Not Available	563	Open in IMG/M
3300031941\|Ga0310912_10185935	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300031941\|Ga0310912_10471790	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300031941\|Ga0310912_11404379	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300031947\|Ga0310909_10648048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300031947\|Ga0310909_10798740	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300032001\|Ga0306922_11668343	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300032066\|Ga0318514_10258052	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300032091\|Ga0318577_10537882	Not Available	556	Open in IMG/M
3300032261\|Ga0306920_102307985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300032261\|Ga0306920_103419266	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300032770\|Ga0335085_10043695	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6118	Open in IMG/M
3300032783\|Ga0335079_10058480	All Organisms → cellular organisms → Bacteria → Acidobacteria	4399	Open in IMG/M
3300032829\|Ga0335070_10294928	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300032829\|Ga0335070_11946357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300032893\|Ga0335069_10690294	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300033158\|Ga0335077_10585648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1166	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.24%
Aquatic	Environmental → Aquatic	22.77%
Plants	Host-Associated → Plants	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.37%
Freshwater	Environmental → Aquatic → Freshwater	21.78%
Peat	Environmental → Terrestrial → Peat	12.87%
Sediment	Environmental → Aquatic → Sediment	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.87%
Loam	Environmental → Terrestrial → Soil → Loam	7.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	19.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.95%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.86%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	11.88%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	6.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.95%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.95%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.97%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.99%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.99%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.99%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.99%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.99%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.99%
Wetland Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001385	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012	Environmental	Open in IMG/M
3300001396	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300008786	Microbial communities from wetland soil in Czech Republic - M3_cDNA	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300026890	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes)	Environmental	Open in IMG/M
3300026909	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes)	Environmental	Open in IMG/M
3300026921	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300028646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_2	Environmental	Open in IMG/M
3300028678	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_2	Environmental	Open in IMG/M
3300028679	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3	Environmental	Open in IMG/M
3300028868	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030001	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_2	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20193J14888_10165223	3300001385	Arctic Peat Soil	KRIQPVPAFGYAGVVVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPEIQLIKKTD*
JGI20175J14863_10132821	3300001396	Arctic Peat Soil	SQLHQQKRIQPLPAFGYAGVAVKAKRKALLALLRKGLRSNRLAFPSHNGAVEWPEIQLIKKTA*
JGI26341J46601_100240495	3300003219	Bog Forest Soil	MISQLQQQKRVQPLPAFGYAGVAVKAKRKVLLALLRKGLRSNRLAFPAQNGAVEWPEIQL
JGI26340J50214_101655392	3300003368	Bog Forest Soil	ATPEWGAWMIAQLQQQKRIQPLLGFGYSGVAVKAKRKELLALLRRGLRNRQLAFPPSNGAAEWPEIRLVKKAA*
JGI24140J50213_101878671	3300003369	Arctic Peat Soil	QLQQQKRIQLLPAFGYAGVAVKAKRKVLLALLRKGLHSNRLAFPAQNGAVEWPEIQLAKKTA*
Ga0062385_100297152	3300004080	Bog Forest Soil	MISQLQQQKRIQMLPSFGYTGVAVKAKRKQLLALLRRGLHGRQLAFPAHNGAVEWPEIHLMKKAPDKLSGGF*
Ga0075029_1002213561	3300006052	Watersheds	EWGPWMISQLHQQKRIQPLPAFGYAGVAVKAKRKELLALLRKGLRSNKLVFPALNGAVEWPAIQLLKQNV*
Ga0097691_10812091	3300006055	Arctic Peat Soil	SQLHQQKRIQPLPAFGYAGVAVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPAIHLIKQNV*
Ga0075521_101478682	3300006642	Arctic Peat Soil	SQLQSQKRIQPLLGFGYAGVAVKAKRKVLLALLRKGLRSNRLAFPAQNGAVEWPAIQLIKQNV*
Ga0075521_102798681	3300006642	Arctic Peat Soil	EWGPWMISQLHQQKRIQPLPAFGYAGVAVKAKRKELLALLRKGLRSNRLTFPAQNGAVEWPEIQLTKKTA*
Ga0075521_103912152	3300006642	Arctic Peat Soil	QLQQQKRIQQLPGFGYSGVAIKAKRKELLALLRRGLRNHQLAFPPSNGAVEWPEIRLVKKAA*
Ga0075520_11488423	3300006795	Arctic Peat Soil	ATPEWGPWMISQLHQQKRIQPLPAFGYAGVAVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPEIQLIKKTA*
Ga0103639_10015842	3300008786	Wetland Soil	GGPWMISQLQQQKRIQPLPAFGYAGVVVKAKRKELLALLRKGLRSNRLAFPAQSGAVEWPEIQIKQNV*
Ga0074046_107193212	3300010339	Bog Forest Soil	WMISQLQQQKRVQPLPAFGYAGVAVKAKRKVLLALLRKGLRSNRLTFPSQNGAVEWPEIQLIKKTA*
Ga0074045_101313323	3300010341	Bog Forest Soil	MISQLHQQKRIQPLLGFGYAGVGVKAKRKVLLALLRKGLRSNRLAFPAQNGAVEWPEIELTKKSA*
Ga0074045_101529514	3300010341	Bog Forest Soil	ATPEWGPWMISQLHQQKRIQPLLGFGFAGAAVKAKRKELLALLRKGLRSNRLAFAAHNGAVEWPEILLIKKTA*
Ga0074044_103538002	3300010343	Bog Forest Soil	MISQLQSQKRIQQLPGFGYAGVAVKAKRKELLALLRRGLRSNRLTFPVQNGAVEWPEIQLIKKTA*
Ga0126376_131256061	3300010359	Tropical Forest Soil	MLEQLRRERRIQPLSGFGYAGVAVKATRKYLLALVRRGLRSRQLGFPTENGPVEWP
Ga0126381_1002018743	3300010376	Tropical Forest Soil	VTSQLQHQKRIQHLASIGYAGVAVKAKRKELLALLRRGLRSKKLAFPAQNGAIE*
Ga0136449_1046111132	3300010379	Peatlands Soil	PATPEWGLWMISQLQQQKRIQRLPGFGYVGVAVKATRKQLLALLARGLRNRQLGFPAQNGPVEWPAIQLVKKTA*
Ga0137364_107498141	3300012198	Vadose Zone Soil	ATPDWGTWMISQLQAQKRIQPLVGFGYDGVAVMGTRKQLLAMLSRGLRSRQLRFPRQNGPVEWPEIQLSKNFG*
Ga0153915_100194461	3300012931	Freshwater Wetlands	KRIQPLPGFGYHGVAVKATRKQLLALLSKGLRGQQLRFPSQNVAVEWPEMQITKKIT*
Ga0181518_100522161	3300014156	Bog	RIQLLPAFGYAGVSVKAKRKELLALLRRGLRSNNLVFPAHNGAVEWPEIQLIKKTA*
Ga0181518_103802202	3300014156	Bog	PATPEWGPWMISQLQQQNRIQLLPAFGYAGVAIKAKRKQLLALLRKGLRSNQLVFPTQNGAVQWPELQLMKKTA*
Ga0181523_105041041	3300014165	Bog	PEWGPWLISQLQSQKRIQPLLGFGYAGVAVKAKRKVLLALLRKGLRSNRLAFPAQNGAVEWPEIQLTKKTA*
Ga0181535_103810231	3300014199	Bog	ISQLQQRQRIQLLPAFGYTGVAVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPEIQLIKKTA*
Ga0182018_107600782	3300014489	Palsa	QKRIQLLPAFGYAGVAVKAKRKELLALLRKGLRSNRLTFPARNGAVEWPEIQLIKKTA*
Ga0181522_108968361	3300014657	Bog	HQQKRIQPLLGFGYAGVAVKAKRKVLLALLRKGLRSNRLAFPSQNGAVEWPEIQLTKKTA
Ga0182030_116596572	3300014838	Bog	LPATPEWGPWMISQLQQQNRIQLLPAFGYAGVAVKAKRKELLVLLRKGLRTHRLAFPAQNGAVEWPEIQLTKKTA*
Ga0182036_101820271	3300016270	Soil	QLQQQKRIQPLPSIGYTGVAVKAKRKDLLALLRRGLRSKKLAFPAHNGAVEWPDIQLIKKAA
Ga0182041_117550772	3300016294	Soil	QQQKRIQPLPSFGYVGVAVKAKRKELLALLRKGLRSNRLAFPAQNGAVEWPEIQLIKKTA
Ga0182033_102544231	3300016319	Soil	KRIQPLLGFGYAGVAVKAKRKELLALLRRGLSSKQLAFPLRNGAVEWPAIYLAKGTA
Ga0182039_104490692	3300016422	Soil	WGPWLISQLQQQKRIQQLPGFGYAGVAIKAKRKELLALLRRGLRSKKLAFPLRNGAVEWPAIYLAKGTA
Ga0187877_13819972	3300017931	Peatland	GPWMISQLHQQKRIQPLLGFGYAGVAVKAKRNVLLALLRKGLRSNRLAFPARNGAVEWPEIQLIKKTA
Ga0187814_103594671	3300017932	Freshwater Sediment	QQKRIQPLPCFGYAGVIVKAKRKELLALLRKGLRSNRLAFPTQNGAVEWPEIQLIKKAA
Ga0187848_100402084	3300017935	Peatland	PEWGPWMISQLQQQKRIQLLPAFGYAGVAVKAKRKELLALLRKGLRSNRLTFPARNGAVEWPEIQLIKKTA
Ga0187867_100600923	3300018033	Peatland	PATPEWGSWMIGQLHQQKRIQTLPGFGYAGVAIKATRKQLLALLARGLRSRQLRFPVQNGPVEWPVIQLVKKVA
Ga0182031_10230264	3300019787	Bog	GMGPWMISQLHQQKRIQPLLGFGYAGVAVKAKRNVLLALLRKGLRSNRLTFPRQNGAVEWPEIQLIKKTA
Ga0182031_10929261	3300019787	Bog	PEWGPWMISQLHQQKRIQPLLGFGYAGVAVKAKRNVLLALLRKGLRSNRLTFPRQNGAVEWPEIQLIKKTA
Ga0208850_10788191	3300025457	Arctic Peat Soil	IQPLLGFGYAGVAVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPEIQLVKKIA
Ga0208079_10100851	3300025481	Arctic Peat Soil	QLHQQKRIQPVPAFGYAGVVVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPEIQLIKKTD
Ga0207926_10848562	3300025619	Arctic Peat Soil	IQPVPAFGYAGVVVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPEIQLIKKTD
Ga0207781_10117261	3300026890	Tropical Forest Soil	WGSWMISQLQQQKRIQPLPAFGYAGVAVKAKRKELLVLLRRGLRSKQLAFPQGNGAVEWPEVYLAKKTA
Ga0207781_10162331	3300026890	Tropical Forest Soil	SSLVCHYGLPAAPEWWPWMISQLQQQKRIQLLPSFGYVGVAVKAKRKELMALLRRGLRSKQLAFPAHNGAVEWPDIQLIKKAA
Ga0207858_10072473	3300026909	Tropical Forest Soil	PWVISQLQQQKRIQPLIGFGYAGVAVKAKRKELLALLRRGLRSRKLAFPTGNGAVEWPEVYLAKKTA
Ga0207860_10104413	3300026921	Tropical Forest Soil	MISQLQQQERIQPLIGFGYAGVAVKAKRKELLALLRRGLRSRKLAFPTRNGAIEWPEIYLAKKTA
Ga0207860_10140501	3300026921	Tropical Forest Soil	ISQLQQQKRIQPLPSFGYTGVAVKAKRKELLALLCRGLRSKQLAFPAQNGAVEWPDIQLIKKAG
Ga0207815_10040125	3300027014	Tropical Forest Soil	ATPEWGSWMISQLRQQKRIQPLPGFGYSGVVIKAKRKELLALLRRGLRTRQLVFPSANGAVEWPEFGLRKKAA
Ga0207762_10594362	3300027063	Tropical Forest Soil	KRIQPLAGFGYAGVSVKAKRKELLALLRRGLRTHQLTFPLANGPVGWPEIRLARERSNKG
Ga0209446_10115851	3300027698	Bog Forest Soil	MISQLQQQKRIQMLPSFGYTGVAVKAKRKQLLALLRRGLHGRQLAFPAHNGAVEWPEIHLMKKAPDKLSGGF
Ga0207862_10422611	3300027703	Tropical Forest Soil	IQPLLGFGYGGVAVKAKRKELLALLRRGLRSKNLAFPAHNGAVEWPEIQLTKKTA
Ga0209040_101660433	3300027824	Bog Forest Soil	QQQKRMQSLLGFGYSGVAVKAKRKELLALLRRGLRNRQLAFPPSNGAVEWPEIRLVKKAA
Ga0209040_102328521	3300027824	Bog Forest Soil	PATPEWGPWLISQLQSQKRIQPLLGFGYAGVAVKAKRKVLLALLRKGLRSNRLAFPAQNGAVEWPEIQLTKKTA
Ga0209040_103413231	3300027824	Bog Forest Soil	WGPWMISQLQQQKRIQPLPAFGYAGVAVKARRNVLLALLRKGLRSNRLAFPFQNGAVEWPEIQLIKKTA
Ga0209039_100157534	3300027825	Bog Forest Soil	MIAQLQQQKRIQPLLGFGYSGVAVKAKRKELLALLRRGLRNKQLGFPTQNGAVEWPEIQLIKKTA
Ga0209039_100869001	3300027825	Bog Forest Soil	EWGSWMISQLQSQKRIQPLPGFGYAGVAIKAKRKELLALLRRGLRNRQLAFPPLNGAVEWPEIHLVKKAA
Ga0209039_103276541	3300027825	Bog Forest Soil	QQKRIQPLPGFGYSGVAVKAKRKELLALLRKGLRNNRLAFPFQNGAVEWPEIQLIKKTA
Ga0209039_103428551	3300027825	Bog Forest Soil	EWGSWMISQLQSQKRIQPLPGFGYAGVAIKAKRKELLALLRKGLRSNRLAFPFQNGAVEWPEMKLIKKAA
Ga0209039_103699931	3300027825	Bog Forest Soil	ISQLQSQKRVQPLLGFGYSGVAVKAKRKELLALLRKGLRNNRLAFPFQNGAVEWPEIQLIKKTT
Ga0302159_100242461	3300028646	Fen	WMISQLHQQKRIQPLPAFGYAGVAVKAKRKELLALLRKGLRSNNLVFPAHNGAVEWPAIQLIKQNV
Ga0302165_100263601	3300028678	Fen	LPATPEWGPWMISQLHQQKRIQPLPCFGYAGVAIKAKRKELLAVLRKGLRSNKLPFPALNGAVEWPDIQLIKKTA
Ga0302169_101854342	3300028679	Fen	QQKRIQPLPAFGYAGVAVKAKRKVLLALLRKGLRGNRLAFPTQNGAVEWPEIQLIKKTA
Ga0302163_100454692	3300028868	Fen	WGPWIISQLHQQKRIQPLPAFGYAGVVVKAKRKELLALLRKGLRSNKLVFPALNGAVEWPAIQLLKQNV
Ga0302200_102243741	3300028909	Bog	IQPLLGFGYAGVSVKAKRKVLLALLRKGLRSNRLAFPSHNGAVEWPEIQLVKKTD
Ga0302200_103861961	3300028909	Bog	QKRIQPLLGFGYAGVAVKAKRNVLLALLRKGLRSNRLTFPRQNGAVEWPEIQLIKKTA
Ga0311347_105031681	3300029923	Fen	QLQQQKRIQSLPAFGYAGVAIKAKRKELLALLRRGLRNHQLAFPPSNGAVEWPEIRLVKKAA
Ga0311328_105650102	3300029939	Bog	PATPEWGPWMISQLHQQKRIQPLLGFGYAGVAVKAKRNVLLALLRKGLRSNRLTFPRQNGAVEWPEIQLIKKTA
Ga0311332_102456621	3300029984	Fen	PEWGPWMISQLHQQKRIQPLPAFGYAGVAVKAKRKELLALLRKGLRSNNLVFPAHNGAVEWPAIQLIKQNV
Ga0302272_11925011	3300030001	Bog	PATPEWGPWMISQLQQQKRIQSLPAFGYAGVVIKAKRKELLALLRRGLRNHQLAFPPSNGAVEWPEIRLVKKAA
Ga0302180_100671384	3300031028	Palsa	QKRIQLLPAFGYAGVAVKAKRKELLALLRKGLRSNQLAFPARNGAVEWPEIQLIKKTA
Ga0265325_100423391	3300031241	Rhizosphere	LPATPEWGHWMISQLKQQKRIQPLPSFGYSGVIVKAKRKELLALLRKGIRNHQLAFPTSNGAVEWPEIRLVKNAA
Ga0302320_116133502	3300031524	Bog	KRIQLLPAFGYAGVAVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPEIQLIKKTA
Ga0318538_102222392	3300031546	Soil	LCVTTVLPATPEWGSWMISQLRQQKRIQPLPGFGYSGVVIKANRKELLALLRRGLRTRQLVFPSANGAVEWPEFGLRKKAA
Ga0310686_1088509052	3300031708	Soil	PEWGPWMISQLQQQKRIQLLPAFGYAGVAVKAKRKELLALLRKGLRSNRLAFPARNGAVEWPEIQLIKKTA
Ga0306917_106374422	3300031719	Soil	PWLISQLQQQKRIQQLPGFGYAGVAIKAKRKELLALLRRGLRSKKLAFPLRNGAVEWPAIYLAKQTA
Ga0306917_106823442	3300031719	Soil	IQPLPGFGYTGVAVKAKRKHLLALLRRGLHSRQLAFPAHNGAVEWPEVQLTKQTV
Ga0306918_110558951	3300031744	Soil	VVLQLQQQKRIQPLPSFGYAGVAVKAKRKELLALLRTGLRSKQLKFPVGNGVVEWPEIYLAKETA
Ga0318492_105105572	3300031748	Soil	IQPLPGFGYSGVVIKAKRKELLALLRRGLRTRQLVFPSANGAVEWPEFGLRKKAA
Ga0318576_103457841	3300031796	Soil	SWMISQLRQQKRIQPLPGFGYSGVVIKAKRKELLALLRRGLRTRQLVFPAANGAVEWPEFGLRKKPG
Ga0318512_107440741	3300031846	Soil	VCHYGLPASPEWGSWMISQLQQQKRIQTLPSFGYAGVVVKAKRKELLALLRRGLRSKQLAFPAQNGAVEWPDIQLIKKAG
Ga0306919_100911444	3300031879	Soil	VVLQLQQQKRIQPLPSFGYTGVAVKAKRKELLALLRRGLRSKKLAFPAHNGAVEWPDIQLIKKSA
Ga0306925_119195901	3300031890	Soil	SSLVCHYGLPASPDWGPWLISQLQLQKRIQPLLGFGYAGVAVKAKRKELLALLRRGLRTHHLTFPPVNAAVEWPQVCLTKMAA
Ga0306923_111454503	3300031910	Soil	PDWGPWVISQLQQQKRIQPLIGFGYAGVAVKAKRKELLALLRRGLRSRKLAFPTGNGAVEWPEVYLVKKTA
Ga0306921_111853621	3300031912	Soil	PGTPEWGQWVISQLQQQKRIQPLPSIGYTGVAVKAKRKDLLALLRRGLRSKKLAFPAHNGAVEWPDIQLIKKAA
Ga0311367_119747602	3300031918	Fen	KRIQPLLGFGYAGVAVKAKRKVLLALLRKGLRSNRLAFPAQNGAVEWSEIQLVKKTA
Ga0310912_101859353	3300031941	Soil	PGTPAWGPWIISQLQKQKRIQPLPGFGYTGVAVKAKRKHLLALLRRGLHSRQLAFPAHNGAVEWPEVQLTKQTV
Ga0310912_104717901	3300031941	Soil	VISQLQQQKRIQPLVGFGYAGVAVKAKRKELLALLRRGLRSRKLAFPTGNGAVEWPEVYLAKKTA
Ga0310912_114043791	3300031941	Soil	PWLISQLQQQKRIQPLPGFGYAGVAVKAKRKELLALLRKGLRTRQLTFPRLNGAVEWPEGRLAKKVV
Ga0310909_106480482	3300031947	Soil	TPEWGPWVISQLQQQKRIQPLPSIGYTGVAVKAKRKDLLALLRRGLRSKKLAFPAHNGAVEWPDIQLIKKAA
Ga0310909_107987403	3300031947	Soil	PATPAWGQWVISQLQQQKRIQQLIGFGYAGVAVKAKRKELLALLRRGLRSRKLAFPTGNGAVEWPEVYLAKKTA
Ga0306922_116683433	3300032001	Soil	QQQKRIQPLIGFGYAGVAVKAKRKELLALLRRGLRSRKLAFPTGNGAVEWPEVYLAKKTA
Ga0318514_102580521	3300032066	Soil	LCVTTVLPATPEWGSWMISQLRQQKRIQPLPGFGYSGVVIKANRKALLALLRRGLRTRQLVFPAANGAVEWPEFGLRKKAG
Ga0318577_105378821	3300032091	Soil	QQQKRIQPLPSIGYTGVAVKAKRKDLLALLRRGLRSKKLAFPAHNGAVEWPDIQLIKKAA
Ga0306920_1023079851	3300032261	Soil	RWYVTTACRPHRHWGPWLISQLQQQKRIQPLPSFGYAGVAVKAKRKELLALLRRGLRGKLAFPLGNGAVEWPEIYLAKETA
Ga0306920_1034192662	3300032261	Soil	WLISQLQLQKRIQPLLGFGYAGVAVKAKRKELLALLRRGLRTHHLTFPPVNAAVEWPQVCLTKMAA
Ga0335085_100436952	3300032770	Soil	MQSLAGFGYAGVLVKAKRKELLALLRRGLHTHQLRFTLANGPVEWPAIGLAKRAAH
Ga0335079_100584801	3300032783	Soil	TPEWGSWMISQLQQQKRIQPLPGFGYQGVAIKATRKHLLTLLARGLRNRQLRFPGQNGPVEWAAIQLVKKTA
Ga0335070_102949283	3300032829	Soil	GLPAIPEWGLWMIAQLKRLKRIQPLPGFGYQGVAVKVTRKQLLTLLSKGLRSRQLPFPSQNAAVEWPEMQLTKSSG
Ga0335070_119463572	3300032829	Soil	LWMITQLKRLKRIQPLPGFGYQGVAVKVTRKQLLVLLSKGLRSRQLPFPTQNAAVEWPEMQLTKSIG
Ga0335069_106902943	3300032893	Soil	QKRIQQLPGFGCSGVAIKAKRKELLALLRRGLRNNRLAFPAQNGAVEWPEIQLTKKTA
Ga0335077_105856481	3300033158	Soil	QLQQQKRIQPLPGFGYAGVVVKAKRKELLALLRRGLRTHQVAFPLANGPVEWPEIGLAKRAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104088

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences