Basic Information | |
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IMG/M Taxon OID | 3300008786 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117955 | Gp0126228 | Ga0103639 |
Sample Name | Microbial communities from wetland soil in Czech Republic - M3_cDNA |
Sequencing Status | Permanent Draft |
Sequencing Center | Friedrich Schiller University of Jena |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 96789886 |
Sequencing Scaffolds | 40 |
Novel Protein Genes | 45 |
Associated Families | 41 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068 | 1 |
All Organisms → cellular organisms → Bacteria | 4 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii | 1 |
Not Available | 23 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 6 |
All Organisms → cellular organisms → Archaea | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6 | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2 | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Microbial Communities From Wetland Soil In Czech Republic |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → wetland area → soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Czech Republic | |||||||
Coordinates | Lat. (o) | 50.14667 | Long. (o) | 12.45083 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000396 | Metagenome / Metatranscriptome | 1185 | Y |
F001167 | Metagenome / Metatranscriptome | 758 | Y |
F001296 | Metagenome / Metatranscriptome | 728 | Y |
F001471 | Metagenome / Metatranscriptome | 688 | Y |
F005001 | Metagenome / Metatranscriptome | 415 | Y |
F006209 | Metagenome / Metatranscriptome | 378 | Y |
F008989 | Metagenome / Metatranscriptome | 324 | N |
F010144 | Metagenome / Metatranscriptome | 307 | Y |
F010404 | Metagenome / Metatranscriptome | 304 | Y |
F010853 | Metagenome / Metatranscriptome | 298 | Y |
F010923 | Metagenome / Metatranscriptome | 297 | Y |
F011011 | Metagenome / Metatranscriptome | 296 | Y |
F011079 | Metagenome / Metatranscriptome | 295 | Y |
F011395 | Metagenome / Metatranscriptome | 291 | Y |
F011711 | Metagenome / Metatranscriptome | 288 | Y |
F022165 | Metagenome / Metatranscriptome | 215 | Y |
F022634 | Metagenome / Metatranscriptome | 213 | Y |
F022810 | Metagenome / Metatranscriptome | 212 | Y |
F030980 | Metagenome / Metatranscriptome | 183 | Y |
F031415 | Metagenome / Metatranscriptome | 182 | Y |
F033058 | Metagenome / Metatranscriptome | 178 | Y |
F036354 | Metagenome / Metatranscriptome | 170 | Y |
F036578 | Metagenome / Metatranscriptome | 169 | Y |
F040688 | Metagenome / Metatranscriptome | 161 | Y |
F063196 | Metagenome / Metatranscriptome | 130 | Y |
F064454 | Metagenome / Metatranscriptome | 128 | N |
F064917 | Metagenome / Metatranscriptome | 128 | Y |
F066909 | Metagenome / Metatranscriptome | 126 | Y |
F068527 | Metagenome / Metatranscriptome | 124 | N |
F069734 | Metagenome / Metatranscriptome | 123 | N |
F073595 | Metagenome / Metatranscriptome | 120 | Y |
F076848 | Metagenome / Metatranscriptome | 117 | N |
F077206 | Metagenome / Metatranscriptome | 117 | Y |
F082104 | Metagenome / Metatranscriptome | 113 | Y |
F088225 | Metagenome / Metatranscriptome | 109 | Y |
F095766 | Metagenome / Metatranscriptome | 105 | Y |
F096679 | Metagenome / Metatranscriptome | 104 | N |
F098626 | Metagenome / Metatranscriptome | 103 | Y |
F102721 | Metagenome / Metatranscriptome | 101 | Y |
F104088 | Metagenome / Metatranscriptome | 101 | Y |
F104421 | Metagenome / Metatranscriptome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0103639_1000022 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068 | 4161 | Open in IMG/M |
Ga0103639_1000047 | All Organisms → cellular organisms → Bacteria | 2902 | Open in IMG/M |
Ga0103639_1000193 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii | 1828 | Open in IMG/M |
Ga0103639_1000517 | All Organisms → cellular organisms → Bacteria | 1333 | Open in IMG/M |
Ga0103639_1000937 | Not Available | 1074 | Open in IMG/M |
Ga0103639_1001436 | All Organisms → cellular organisms → Bacteria | 934 | Open in IMG/M |
Ga0103639_1001584 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 899 | Open in IMG/M |
Ga0103639_1001662 | All Organisms → cellular organisms → Bacteria | 883 | Open in IMG/M |
Ga0103639_1001775 | Not Available | 865 | Open in IMG/M |
Ga0103639_1001788 | Not Available | 863 | Open in IMG/M |
Ga0103639_1002240 | All Organisms → cellular organisms → Archaea | 803 | Open in IMG/M |
Ga0103639_1002681 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 755 | Open in IMG/M |
Ga0103639_1002937 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6 | 735 | Open in IMG/M |
Ga0103639_1003310 | Not Available | 704 | Open in IMG/M |
Ga0103639_1003666 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2 | 679 | Open in IMG/M |
Ga0103639_1003927 | Not Available | 663 | Open in IMG/M |
Ga0103639_1003954 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 661 | Open in IMG/M |
Ga0103639_1004236 | Not Available | 645 | Open in IMG/M |
Ga0103639_1004413 | Not Available | 636 | Open in IMG/M |
Ga0103639_1004578 | Not Available | 629 | Open in IMG/M |
Ga0103639_1004962 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 611 | Open in IMG/M |
Ga0103639_1005415 | Not Available | 593 | Open in IMG/M |
Ga0103639_1005433 | Not Available | 593 | Open in IMG/M |
Ga0103639_1005564 | Not Available | 588 | Open in IMG/M |
Ga0103639_1005818 | Not Available | 579 | Open in IMG/M |
Ga0103639_1005867 | Not Available | 577 | Open in IMG/M |
Ga0103639_1005971 | Not Available | 573 | Open in IMG/M |
Ga0103639_1005992 | Not Available | 573 | Open in IMG/M |
Ga0103639_1006311 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | 564 | Open in IMG/M |
Ga0103639_1006829 | Not Available | 550 | Open in IMG/M |
Ga0103639_1007267 | Not Available | 539 | Open in IMG/M |
Ga0103639_1007342 | Not Available | 537 | Open in IMG/M |
Ga0103639_1007678 | Not Available | 528 | Open in IMG/M |
Ga0103639_1007773 | Not Available | 526 | Open in IMG/M |
Ga0103639_1008084 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 519 | Open in IMG/M |
Ga0103639_1008465 | Not Available | 512 | Open in IMG/M |
Ga0103639_1008537 | Not Available | 510 | Open in IMG/M |
Ga0103639_1008548 | Not Available | 510 | Open in IMG/M |
Ga0103639_1008601 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 509 | Open in IMG/M |
Ga0103639_1008716 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 507 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0103639_1000022 | Ga0103639_10000221 | F010853 | FMRKTQHKTSEIVLKEQTMPTTSKSSKKVANTATATVNPEFVDAFAPLYLSSVERVADLQKKTLDIAAEQTAEWLNAWKKAFSFSPVTAPSFIFDVAGQAVQTAIETQKGAIDLVVEQSKSVAGIAKTRADAYAKIVDGVSKTIKTSVEKSVDAQNKVLNFASEQTKAVFEGTKKQLGGAAGPATVVVDSFQRGAEAVIEAQKSMLNIASQPFVSKN* |
Ga0103639_1000047 | Ga0103639_10000471 | F011711 | MGDKRQKNQLQMLLAFAVEGRSEAPKARREGTESLTAKRARENPAIPEQV |
Ga0103639_1000193 | Ga0103639_10001933 | F001471 | MMKTRLVVVALLSLAVALPAFGKTYKSTYPVACSELWSAVQETLSNPDNYNVVEKDDAKMTAAYDVKHAAHVTITGAALQRTNHVTLVSKGTGCEMQVVSNYSGFEHDDKGDFRKRVDESLAKVQAAPASQPAKPEAPAK* |
Ga0103639_1000517 | Ga0103639_10005171 | F063196 | LDKALRIYAWFLLIVTALPAAARLAKPKELARILLVRYQNPQRRKRARIGGLIYLGLSLFAIPFLLRAEMRQER |
Ga0103639_1000937 | Ga0103639_10009371 | F077206 | GFEVRVFVNGSPKTTVDANKRNELRACMTAAGLTPDEVNEKVHELYITNTTEFVGSR* |
Ga0103639_1001436 | Ga0103639_10014362 | F022165 | LNEIICPLCHGHGRERKELLVVRWRSREFERELQNVADEAAFGTTGGLSSPFERHEPVYSNESD* |
Ga0103639_1001584 | Ga0103639_10015842 | F104088 | GGPWMISQLQQQKRIQPLPAFGYAGVVVKAKRKELLALLRKGLRSNRLAFPAQSGAVEWPEIQIKQNV* |
Ga0103639_1001662 | Ga0103639_10016622 | F082104 | MELRLTDQEEELLREILQDHHKHLLHEINKADHYEFKVGLRHRCTVVEGLIDKLQAVHSS |
Ga0103639_1001775 | Ga0103639_10017752 | F022810 | MDIRKYLGTSILTAALLLACGIPGLAKNSRTVALTHDAVLSGKTLPAGKYVVQWEAHNPQAVVEFAQDHKVVLSTEGRVEERSKGYDHDAVVYNTASDGKMSLAEIRFAFSNKVLVFDQETPQLKAAR* |
Ga0103639_1001788 | Ga0103639_10017881 | F068527 | ENARDRSLWRFNLDDQVVQPAVASPGYPSGELAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPARTACYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGLRRRLLQLPACAFRCCNFPACAGSCPHLPNRW* |
Ga0103639_1002240 | Ga0103639_10022401 | F088225 | MTISPNLGEIGAPQLGHFNDATPEGATTGEAEATAALGVDVVLAPHFEQNAASSGI* |
Ga0103639_1002681 | Ga0103639_10026811 | F011011 | GRCYTASDTTMTSPILRILGAVAGLGSAILCWFLGTTLAGPLRQAKLFSLGSSQYILLAFLFIPALILAVVALFWVPPRVSGEGPLPEGRRWRLVLVLVFVAAFVFGVVR* |
Ga0103639_1002937 | Ga0103639_10029372 | F010144 | MVTYLSIVFGHLLKLVAVAAGAIYAGMVLMRYRTDRPHYRLSFELRDPARSVQHLVVWLGVKVLAACLRFAGAVFNMLLEASAEVGEWFMRRSPTVQQSIRSRFLV* |
Ga0103639_1003310 | Ga0103639_10033101 | F011079 | MLKITPLDCEIKGSLRVKRRDPWPWANASPKAMADPRPVVKTRMKIHRRVLTWFAGRWRNHWLKRAEKPHSKAAHRKVPAGPATRPITPLAVENGVG |
Ga0103639_1003666 | Ga0103639_10036661 | F006209 | MDCKAIRDLVSDQRGGELSAEAREHLSKCAGCGGFLRDARLVHAGFCALAEEVAPEASLGFASRVVRRLQEWEEKGAGREFFETVGRRFVYATLALTLALLLSLVLPTSGPVRGVAGADFLGLQSNSQSSQPDVIGGEIGDSHDWIPGRLAD* |
Ga0103639_1003673 | Ga0103639_10036732 | F008989 | MANNAVLIRGLDRDIYNSVIAKARQQGKNVAELVNEALQQYMQESPSESQDVFDTKKLVIAGTVLLSKADIMGLHKELGNFHLENSGELTFDKDVDREAFQKIEHIHNTGKLRVPTDVHHFALLKAGHVRGEVEKY* |
Ga0103639_1003927 | Ga0103639_10039271 | F036578 | MPEELVNPASPPDLSIQLQRDRANQPDPTFPQSPGIILETHRAIFQSQAAA |
Ga0103639_1003954 | Ga0103639_10039542 | F098626 | MELGLDQAIMDTPVAREIQHQLQEWLRSRCPDHLGAIMEKMKN* |
Ga0103639_1004236 | Ga0103639_10042361 | F040688 | MVADGCEPPPETRLEQLAKQAAELALLLAGLSARGLGNDPQALDAVEELALRLLKEVSAVRTGRNRAVGESSGIWRAMQPVNRR* |
Ga0103639_1004301 | Ga0103639_10043011 | F102721 | ESENRRQPSQRVKPGAKAQEGSLAAPEIAKADESRKLISWQIRKIREPAEIEYSSTAQPAMQGSVEVRGVSKAQPEVETPGASRVNRNR* |
Ga0103639_1004413 | Ga0103639_10044131 | F022634 | MRVLDIPRSGKRGDTVWQSNRYGQYSYPAFIPFNPRTPAQVAVRGTFGAVSKRWRQLAEDQRIIWCAVAKTKRSKVRLCQCGPLSGFLFFVKVNVALANRGIAQVDLPPGYESCSPPAVPNVFDTTRFDQPPVGPVLFLRANQFVAEWRDRPQEIMAGQPP* |
Ga0103639_1004578 | Ga0103639_10045781 | F104421 | VEAAGKQAKEQAGNFDPGMEALKGAAVAGERKAVTSRRFSLREKEKAAASREASIPRLEKTALGERNGESSGALKRGVQCRA* |
Ga0103639_1004962 | Ga0103639_10049622 | F076848 | MLSDPKLTELRSFWMWDPLKEKWDFIRDWEEHKVEAMRKFEQYVFGREGGLGQE |
Ga0103639_1005415 | Ga0103639_10054151 | F030980 | LLCSLIALGLRSLNAFGILTPNVVQQGQTLWYMSFYKGALLFFVIAIATASYSWVRGEKT |
Ga0103639_1005433 | Ga0103639_10054331 | F005001 | MHGIEHRRQKRRTIRLSAPRWPFSPAHGSMLPGSPLAASCPEPVARNGLSLSRNGCHLSAASIPGSKLPACYFASFQIGYTARSALRLHYRFPVCAGYGGFTASNPLHFPDSVRPAAPAVSTPLRDFCLPRDQSVQPRLLPAGPPDESARFPLAPRRPS* |
Ga0103639_1005564 | Ga0103639_10055641 | F011395 | MAAWRRAVVTGERKAVARCRFQPGRTRATFKALIRSSQKGRRGAWKLSPVIRLQSSEPCMPASGQAELRITWNQV |
Ga0103639_1005786 | Ga0103639_10057861 | F096679 | LRKRSGPGALIRSPYLAIESGRGEREEIGRSRKAGRAAASSAERFDPEGCKSPKGEWRLEKQPVESAGNAATGQKRRSSPDRGEPVRGVELKGRTGSGTGWQGREVAGQEL* |
Ga0103639_1005818 | Ga0103639_10058181 | F001296 | MEDAERRQPLWASEKPLRATGSGQKAASGEPGSIDPGAGENGPRGAERRIVRRFCPRCSMPCMPVVSWAGNQVTWNH |
Ga0103639_1005867 | Ga0103639_10058671 | F010923 | RRKRSGPGTVIRSPCLKKIRVAGSERRSGGFPRWTGRQQTPLNALILREVKVLRESGDGGRGQPNQVVEVQRASGIEAAATGANRDAVAEPKGRTGTEADLEGCEVAGRER* |
Ga0103639_1005971 | Ga0103639_10059711 | F064917 | MDSDSGTQRKCFWVLLTLLSLGAYFLPLGWGVVETLVSVAVSWWVVYRSGIF* |
Ga0103639_1005992 | Ga0103639_10059921 | F000396 | FEVPSDLISQPNSPPACNGTELCSQDRRAPPLRLPAALFVRRQINASRFTCQLTWPEPASRSGLSLSRNDCPSPDHHFKVNAPGLLLRHPASRLSCPFGLRLPCALRFAPVRARSRPKTRCLTRARHSQPFLGSPLPFGAFQTLPAQSVQPDSWPGSPPAEHSRLPFTPRLRIYFISIETRSPFQARFAS |
Ga0103639_1006311 | Ga0103639_10063111 | F033058 | LTWLAGRWRNHQPKRAEKPHSKFSGRETLNGPATRPVTPLAVENGVGKPAAAEKRAPNAGTGKRAWRTPIPHLSRSDRKVRPGL |
Ga0103639_1006571 | Ga0103639_10065712 | F095766 | MAAPVWHGKDVSRVVAAGEKIMILLITASSRGPECGLAMEQGTGQKTQVAGSVPQAVTRLRNTDYEALAIDQSLLEADFRALDTLLNHAGT |
Ga0103639_1006829 | Ga0103639_10068291 | F069734 | MSPWLNRTLHPRLAPRMNLRVHSGHGNLGMAFGALLISIRRFTIGKPTMNSPTETLTYAFDHASVTAPTSYRGSRNGSAEEPR |
Ga0103639_1007267 | Ga0103639_10072671 | F000396 | LVPSDPISQPNSPPACIGTELRNQTRRVISLPLPAAFFGRLRINAFRFTCQLLWPELVSRSGLSLSRNDCPFPGHHFEVEAPDLLLQYPAVRPSCPFGFQLPDVRRFAPARARSPPESRCLTSVRHSQPFVGSPLPFRAFRTLPDQSVRSDSWPGSPPSKRSRWPFAPWLQFYFTSLDT |
Ga0103639_1007342 | Ga0103639_10073421 | F005001 | MHGIEHREQERRTIRLSAPRWPFSPAPGSVLPGSPLAASRPEPVARNGFSLTHNGCRLSATSIPGSKLPACYFASFQVGRSARSALRLRYRTPDCAGCGRFTACDPLHFHHSVRPAAPTVSTALQDSYIPRDQSVQPRLLPAGPPDESARFPLAPRRP |
Ga0103639_1007678 | Ga0103639_10076781 | F077206 | LVRDRSAVQVFVDGIPKVTVDANQRNELRNCMVSAGLTPAEVNHKVHELYMTNTTEFTSER* |
Ga0103639_1007773 | Ga0103639_10077732 | F066909 | MPPEQVAAIDRRATDSGLDRTKYLLRLVDQDLARPARRLKRRFASLHLLGRFRSRGSSNAQVRAALRAQGEKDR* |
Ga0103639_1008084 | Ga0103639_10080841 | F001167 | MSQFTDLVRGGEMVREVKQKFPETEAVFEKFGLRPSCFDCSIEMAARKVDARLEDLLVEVNAAVYKNRGVTARVS* |
Ga0103639_1008450 | Ga0103639_10084501 | F008989 | CELAIMTNNAVLIRGLDRDIYNGVIAKAKQQGKNVAELVNEALQQYMRESPSESHDVFDTKKLIIAGTVLLSKADILGLHKELGNFHLENSGELTFDKDVDREAFQKIEHIHNTGKLRVPTDVHHFALLKAGHIRGEVEKY* |
Ga0103639_1008465 | Ga0103639_10084651 | F010404 | MQPFTLLQRRSALRQIPAAGSTLLAYIFEAALEFQSARSASRSRPRLAFFRLTGLDRCESPVANFLS* |
Ga0103639_1008537 | Ga0103639_10085372 | F064454 | TGQNERRKKKLVEDLEKLLFEEIPEMETPRIKRCEWCRQPLPNDRYHLKICPQCRKESIDTFMKTH* |
Ga0103639_1008548 | Ga0103639_10085481 | F073595 | LNREGHAVSAGPVKTFRNVGDGKNATADLWTKGNLRVKRRDPW |
Ga0103639_1008601 | Ga0103639_10086011 | F031415 | MMTHDDLEKIREEHEAEDIWRKYSRHFVADMLEACAICGTIREKEHLARCRWCEDVYFCKQGVCSQQHQAEMHPAVAFWTW* |
Ga0103639_1008716 | Ga0103639_10087162 | F036354 | RKGVIARWGLKEAWIKDASRWTRTGYEAYGTGRAGK* |
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