NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008786

3300008786: Microbial communities from wetland soil in Czech Republic - M3_cDNA



Overview

Basic Information
IMG/M Taxon OID3300008786 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117955 | Gp0126228 | Ga0103639
Sample NameMicrobial communities from wetland soil in Czech Republic - M3_cDNA
Sequencing StatusPermanent Draft
Sequencing CenterFriedrich Schiller University of Jena
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size96789886
Sequencing Scaffolds40
Novel Protein Genes45
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii1
Not Available23
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA61
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA21
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Wetland Soil In Czech Republic
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomewetland areasoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationCzech Republic
CoordinatesLat. (o)50.14667Long. (o)12.45083Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000396Metagenome / Metatranscriptome1185Y
F001167Metagenome / Metatranscriptome758Y
F001296Metagenome / Metatranscriptome728Y
F001471Metagenome / Metatranscriptome688Y
F005001Metagenome / Metatranscriptome415Y
F006209Metagenome / Metatranscriptome378Y
F008989Metagenome / Metatranscriptome324N
F010144Metagenome / Metatranscriptome307Y
F010404Metagenome / Metatranscriptome304Y
F010853Metagenome / Metatranscriptome298Y
F010923Metagenome / Metatranscriptome297Y
F011011Metagenome / Metatranscriptome296Y
F011079Metagenome / Metatranscriptome295Y
F011395Metagenome / Metatranscriptome291Y
F011711Metagenome / Metatranscriptome288Y
F022165Metagenome / Metatranscriptome215Y
F022634Metagenome / Metatranscriptome213Y
F022810Metagenome / Metatranscriptome212Y
F030980Metagenome / Metatranscriptome183Y
F031415Metagenome / Metatranscriptome182Y
F033058Metagenome / Metatranscriptome178Y
F036354Metagenome / Metatranscriptome170Y
F036578Metagenome / Metatranscriptome169Y
F040688Metagenome / Metatranscriptome161Y
F063196Metagenome / Metatranscriptome130Y
F064454Metagenome / Metatranscriptome128N
F064917Metagenome / Metatranscriptome128Y
F066909Metagenome / Metatranscriptome126Y
F068527Metagenome / Metatranscriptome124N
F069734Metagenome / Metatranscriptome123N
F073595Metagenome / Metatranscriptome120Y
F076848Metagenome / Metatranscriptome117N
F077206Metagenome / Metatranscriptome117Y
F082104Metagenome / Metatranscriptome113Y
F088225Metagenome / Metatranscriptome109Y
F095766Metagenome / Metatranscriptome105Y
F096679Metagenome / Metatranscriptome104N
F098626Metagenome / Metatranscriptome103Y
F102721Metagenome / Metatranscriptome101Y
F104088Metagenome / Metatranscriptome101Y
F104421Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103639_1000022All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00684161Open in IMG/M
Ga0103639_1000047All Organisms → cellular organisms → Bacteria2902Open in IMG/M
Ga0103639_1000193All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii1828Open in IMG/M
Ga0103639_1000517All Organisms → cellular organisms → Bacteria1333Open in IMG/M
Ga0103639_1000937Not Available1074Open in IMG/M
Ga0103639_1001436All Organisms → cellular organisms → Bacteria934Open in IMG/M
Ga0103639_1001584All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium899Open in IMG/M
Ga0103639_1001662All Organisms → cellular organisms → Bacteria883Open in IMG/M
Ga0103639_1001775Not Available865Open in IMG/M
Ga0103639_1001788Not Available863Open in IMG/M
Ga0103639_1002240All Organisms → cellular organisms → Archaea803Open in IMG/M
Ga0103639_1002681All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium755Open in IMG/M
Ga0103639_1002937All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6735Open in IMG/M
Ga0103639_1003310Not Available704Open in IMG/M
Ga0103639_1003666All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2679Open in IMG/M
Ga0103639_1003927Not Available663Open in IMG/M
Ga0103639_1003954All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium661Open in IMG/M
Ga0103639_1004236Not Available645Open in IMG/M
Ga0103639_1004413Not Available636Open in IMG/M
Ga0103639_1004578Not Available629Open in IMG/M
Ga0103639_1004962All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium611Open in IMG/M
Ga0103639_1005415Not Available593Open in IMG/M
Ga0103639_1005433Not Available593Open in IMG/M
Ga0103639_1005564Not Available588Open in IMG/M
Ga0103639_1005818Not Available579Open in IMG/M
Ga0103639_1005867Not Available577Open in IMG/M
Ga0103639_1005971Not Available573Open in IMG/M
Ga0103639_1005992Not Available573Open in IMG/M
Ga0103639_1006311All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium564Open in IMG/M
Ga0103639_1006829Not Available550Open in IMG/M
Ga0103639_1007267Not Available539Open in IMG/M
Ga0103639_1007342Not Available537Open in IMG/M
Ga0103639_1007678Not Available528Open in IMG/M
Ga0103639_1007773Not Available526Open in IMG/M
Ga0103639_1008084All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium519Open in IMG/M
Ga0103639_1008465Not Available512Open in IMG/M
Ga0103639_1008537Not Available510Open in IMG/M
Ga0103639_1008548Not Available510Open in IMG/M
Ga0103639_1008601All Organisms → cellular organisms → Bacteria → Acidobacteria509Open in IMG/M
Ga0103639_1008716All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103639_1000022Ga0103639_10000221F010853FMRKTQHKTSEIVLKEQTMPTTSKSSKKVANTATATVNPEFVDAFAPLYLSSVERVADLQKKTLDIAAEQTAEWLNAWKKAFSFSPVTAPSFIFDVAGQAVQTAIETQKGAIDLVVEQSKSVAGIAKTRADAYAKIVDGVSKTIKTSVEKSVDAQNKVLNFASEQTKAVFEGTKKQLGGAAGPATVVVDSFQRGAEAVIEAQKSMLNIASQPFVSKN*
Ga0103639_1000047Ga0103639_10000471F011711MGDKRQKNQLQMLLAFAVEGRSEAPKARREGTESLTAKRARENPAIPEQV
Ga0103639_1000193Ga0103639_10001933F001471MMKTRLVVVALLSLAVALPAFGKTYKSTYPVACSELWSAVQETLSNPDNYNVVEKDDAKMTAAYDVKHAAHVTITGAALQRTNHVTLVSKGTGCEMQVVSNYSGFEHDDKGDFRKRVDESLAKVQAAPASQPAKPEAPAK*
Ga0103639_1000517Ga0103639_10005171F063196LDKALRIYAWFLLIVTALPAAARLAKPKELARILLVRYQNPQRRKRARIGGLIYLGLSLFAIPFLLRAEMRQER
Ga0103639_1000937Ga0103639_10009371F077206GFEVRVFVNGSPKTTVDANKRNELRACMTAAGLTPDEVNEKVHELYITNTTEFVGSR*
Ga0103639_1001436Ga0103639_10014362F022165LNEIICPLCHGHGRERKELLVVRWRSREFERELQNVADEAAFGTTGGLSSPFERHEPVYSNESD*
Ga0103639_1001584Ga0103639_10015842F104088GGPWMISQLQQQKRIQPLPAFGYAGVVVKAKRKELLALLRKGLRSNRLAFPAQSGAVEWPEIQIKQNV*
Ga0103639_1001662Ga0103639_10016622F082104MELRLTDQEEELLREILQDHHKHLLHEINKADHYEFKVGLRHRCTVVEGLIDKLQAVHSS
Ga0103639_1001775Ga0103639_10017752F022810MDIRKYLGTSILTAALLLACGIPGLAKNSRTVALTHDAVLSGKTLPAGKYVVQWEAHNPQAVVEFAQDHKVVLSTEGRVEERSKGYDHDAVVYNTASDGKMSLAEIRFAFSNKVLVFDQETPQLKAAR*
Ga0103639_1001788Ga0103639_10017881F068527ENARDRSLWRFNLDDQVVQPAVASPGYPSGELAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPARTACYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGLRRRLLQLPACAFRCCNFPACAGSCPHLPNRW*
Ga0103639_1002240Ga0103639_10022401F088225MTISPNLGEIGAPQLGHFNDATPEGATTGEAEATAALGVDVVLAPHFEQNAASSGI*
Ga0103639_1002681Ga0103639_10026811F011011GRCYTASDTTMTSPILRILGAVAGLGSAILCWFLGTTLAGPLRQAKLFSLGSSQYILLAFLFIPALILAVVALFWVPPRVSGEGPLPEGRRWRLVLVLVFVAAFVFGVVR*
Ga0103639_1002937Ga0103639_10029372F010144MVTYLSIVFGHLLKLVAVAAGAIYAGMVLMRYRTDRPHYRLSFELRDPARSVQHLVVWLGVKVLAACLRFAGAVFNMLLEASAEVGEWFMRRSPTVQQSIRSRFLV*
Ga0103639_1003310Ga0103639_10033101F011079MLKITPLDCEIKGSLRVKRRDPWPWANASPKAMADPRPVVKTRMKIHRRVLTWFAGRWRNHWLKRAEKPHSKAAHRKVPAGPATRPITPLAVENGVG
Ga0103639_1003666Ga0103639_10036661F006209MDCKAIRDLVSDQRGGELSAEAREHLSKCAGCGGFLRDARLVHAGFCALAEEVAPEASLGFASRVVRRLQEWEEKGAGREFFETVGRRFVYATLALTLALLLSLVLPTSGPVRGVAGADFLGLQSNSQSSQPDVIGGEIGDSHDWIPGRLAD*
Ga0103639_1003673Ga0103639_10036732F008989MANNAVLIRGLDRDIYNSVIAKARQQGKNVAELVNEALQQYMQESPSESQDVFDTKKLVIAGTVLLSKADIMGLHKELGNFHLENSGELTFDKDVDREAFQKIEHIHNTGKLRVPTDVHHFALLKAGHVRGEVEKY*
Ga0103639_1003927Ga0103639_10039271F036578MPEELVNPASPPDLSIQLQRDRANQPDPTFPQSPGIILETHRAIFQSQAAA
Ga0103639_1003954Ga0103639_10039542F098626MELGLDQAIMDTPVAREIQHQLQEWLRSRCPDHLGAIMEKMKN*
Ga0103639_1004236Ga0103639_10042361F040688MVADGCEPPPETRLEQLAKQAAELALLLAGLSARGLGNDPQALDAVEELALRLLKEVSAVRTGRNRAVGESSGIWRAMQPVNRR*
Ga0103639_1004301Ga0103639_10043011F102721ESENRRQPSQRVKPGAKAQEGSLAAPEIAKADESRKLISWQIRKIREPAEIEYSSTAQPAMQGSVEVRGVSKAQPEVETPGASRVNRNR*
Ga0103639_1004413Ga0103639_10044131F022634MRVLDIPRSGKRGDTVWQSNRYGQYSYPAFIPFNPRTPAQVAVRGTFGAVSKRWRQLAEDQRIIWCAVAKTKRSKVRLCQCGPLSGFLFFVKVNVALANRGIAQVDLPPGYESCSPPAVPNVFDTTRFDQPPVGPVLFLRANQFVAEWRDRPQEIMAGQPP*
Ga0103639_1004578Ga0103639_10045781F104421VEAAGKQAKEQAGNFDPGMEALKGAAVAGERKAVTSRRFSLREKEKAAASREASIPRLEKTALGERNGESSGALKRGVQCRA*
Ga0103639_1004962Ga0103639_10049622F076848MLSDPKLTELRSFWMWDPLKEKWDFIRDWEEHKVEAMRKFEQYVFGREGGLGQE
Ga0103639_1005415Ga0103639_10054151F030980LLCSLIALGLRSLNAFGILTPNVVQQGQTLWYMSFYKGALLFFVIAIATASYSWVRGEKT
Ga0103639_1005433Ga0103639_10054331F005001MHGIEHRRQKRRTIRLSAPRWPFSPAHGSMLPGSPLAASCPEPVARNGLSLSRNGCHLSAASIPGSKLPACYFASFQIGYTARSALRLHYRFPVCAGYGGFTASNPLHFPDSVRPAAPAVSTPLRDFCLPRDQSVQPRLLPAGPPDESARFPLAPRRPS*
Ga0103639_1005564Ga0103639_10055641F011395MAAWRRAVVTGERKAVARCRFQPGRTRATFKALIRSSQKGRRGAWKLSPVIRLQSSEPCMPASGQAELRITWNQV
Ga0103639_1005786Ga0103639_10057861F096679LRKRSGPGALIRSPYLAIESGRGEREEIGRSRKAGRAAASSAERFDPEGCKSPKGEWRLEKQPVESAGNAATGQKRRSSPDRGEPVRGVELKGRTGSGTGWQGREVAGQEL*
Ga0103639_1005818Ga0103639_10058181F001296MEDAERRQPLWASEKPLRATGSGQKAASGEPGSIDPGAGENGPRGAERRIVRRFCPRCSMPCMPVVSWAGNQVTWNH
Ga0103639_1005867Ga0103639_10058671F010923RRKRSGPGTVIRSPCLKKIRVAGSERRSGGFPRWTGRQQTPLNALILREVKVLRESGDGGRGQPNQVVEVQRASGIEAAATGANRDAVAEPKGRTGTEADLEGCEVAGRER*
Ga0103639_1005971Ga0103639_10059711F064917MDSDSGTQRKCFWVLLTLLSLGAYFLPLGWGVVETLVSVAVSWWVVYRSGIF*
Ga0103639_1005992Ga0103639_10059921F000396FEVPSDLISQPNSPPACNGTELCSQDRRAPPLRLPAALFVRRQINASRFTCQLTWPEPASRSGLSLSRNDCPSPDHHFKVNAPGLLLRHPASRLSCPFGLRLPCALRFAPVRARSRPKTRCLTRARHSQPFLGSPLPFGAFQTLPAQSVQPDSWPGSPPAEHSRLPFTPRLRIYFISIETRSPFQARFAS
Ga0103639_1006311Ga0103639_10063111F033058LTWLAGRWRNHQPKRAEKPHSKFSGRETLNGPATRPVTPLAVENGVGKPAAAEKRAPNAGTGKRAWRTPIPHLSRSDRKVRPGL
Ga0103639_1006571Ga0103639_10065712F095766MAAPVWHGKDVSRVVAAGEKIMILLITASSRGPECGLAMEQGTGQKTQVAGSVPQAVTRLRNTDYEALAIDQSLLEADFRALDTLLNHAGT
Ga0103639_1006829Ga0103639_10068291F069734MSPWLNRTLHPRLAPRMNLRVHSGHGNLGMAFGALLISIRRFTIGKPTMNSPTETLTYAFDHASVTAPTSYRGSRNGSAEEPR
Ga0103639_1007267Ga0103639_10072671F000396LVPSDPISQPNSPPACIGTELRNQTRRVISLPLPAAFFGRLRINAFRFTCQLLWPELVSRSGLSLSRNDCPFPGHHFEVEAPDLLLQYPAVRPSCPFGFQLPDVRRFAPARARSPPESRCLTSVRHSQPFVGSPLPFRAFRTLPDQSVRSDSWPGSPPSKRSRWPFAPWLQFYFTSLDT
Ga0103639_1007342Ga0103639_10073421F005001MHGIEHREQERRTIRLSAPRWPFSPAPGSVLPGSPLAASRPEPVARNGFSLTHNGCRLSATSIPGSKLPACYFASFQVGRSARSALRLRYRTPDCAGCGRFTACDPLHFHHSVRPAAPTVSTALQDSYIPRDQSVQPRLLPAGPPDESARFPLAPRRP
Ga0103639_1007678Ga0103639_10076781F077206LVRDRSAVQVFVDGIPKVTVDANQRNELRNCMVSAGLTPAEVNHKVHELYMTNTTEFTSER*
Ga0103639_1007773Ga0103639_10077732F066909MPPEQVAAIDRRATDSGLDRTKYLLRLVDQDLARPARRLKRRFASLHLLGRFRSRGSSNAQVRAALRAQGEKDR*
Ga0103639_1008084Ga0103639_10080841F001167MSQFTDLVRGGEMVREVKQKFPETEAVFEKFGLRPSCFDCSIEMAARKVDARLEDLLVEVNAAVYKNRGVTARVS*
Ga0103639_1008450Ga0103639_10084501F008989CELAIMTNNAVLIRGLDRDIYNGVIAKAKQQGKNVAELVNEALQQYMRESPSESHDVFDTKKLIIAGTVLLSKADILGLHKELGNFHLENSGELTFDKDVDREAFQKIEHIHNTGKLRVPTDVHHFALLKAGHIRGEVEKY*
Ga0103639_1008465Ga0103639_10084651F010404MQPFTLLQRRSALRQIPAAGSTLLAYIFEAALEFQSARSASRSRPRLAFFRLTGLDRCESPVANFLS*
Ga0103639_1008537Ga0103639_10085372F064454TGQNERRKKKLVEDLEKLLFEEIPEMETPRIKRCEWCRQPLPNDRYHLKICPQCRKESIDTFMKTH*
Ga0103639_1008548Ga0103639_10085481F073595LNREGHAVSAGPVKTFRNVGDGKNATADLWTKGNLRVKRRDPW
Ga0103639_1008601Ga0103639_10086011F031415MMTHDDLEKIREEHEAEDIWRKYSRHFVADMLEACAICGTIREKEHLARCRWCEDVYFCKQGVCSQQHQAEMHPAVAFWTW*
Ga0103639_1008716Ga0103639_10087162F036354RKGVIARWGLKEAWIKDASRWTRTGYEAYGTGRAGK*

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