Scaffold BEDJCVIAssemblies_1106445183693

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BEDJCVIAssemblies_1106445183693

Scaffold BEDJCVIAssemblies_1106445183693

Overview

Basic Information
Taxon OID	2012990007 Open in IMG/M
Scaffold ID	BEDJCVIAssemblies_1106445183693 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Beowulf East Transect D, Yellowstone National Park, USA - YSTONE2 (BED)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1481
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.731451	Long. (^o)	-110.7113131	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026309	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
BEDJCVIAssemblies_31800	F026309	AGGAGG	MSLPAPLSNPNLFIGLVVFIVASILLYLERIPLSAWTTIVGVLLGYYFGYQHALLKERRTSE

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