NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BEDJCVIAssemblies_1106445183722

Scaffold BEDJCVIAssemblies_1106445183722


Overview

Basic Information
Taxon OID2012990007 Open in IMG/M
Scaffold IDBEDJCVIAssemblies_1106445183722 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beowulf East Transect D, Yellowstone National Park, USA - YSTONE2 (BED)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2477
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.731451Long. (o)-110.7113131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F011233Metagenome / Metatranscriptome293N
F027904Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
BEDJCVIAssemblies_32600F027904GGTGGMEKYEPPEYDLFNLNNGGTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATASLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLAAVSSVANSANVFVKAYFVKGTGSPI
BEDJCVIAssemblies_32620F011233AGGAGLAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSTSTVPTSSSFVAEEVVSAKLPVKVT
BEDJCVIAssemblies_32630F006070AGGMTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGAFLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVEAIQSDFYTSAAERYLSLALTYSTAPSAGFVRAHIDLFYGGV
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