NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNP4_C2592

Scaffold YNP4_C2592


Overview

Basic Information
Taxon OID2013843003 Open in IMG/M
Scaffold IDYNP4_C2592 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2089
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.733519Long. (o)-110.333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062912Metagenome / Metatranscriptome130Y
F077497Metagenome / Metatranscriptome117Y
F087443Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
YNP4_87490F062912N/AMEILEKTYNLFLISEIIESESDLDKELERLLVDRDYNTMAKTLLYVLIYTLNNDTTYKNIRNIYINEAIDLLYMIDRIEFDDERIMKKFIQLIYRFISYSLEYKIKFITDHEKRELVKAKLHELVNII
YNP4_87510F087443N/AMGQKEGPKKNYWMVFNETDNIDYIEKEIAKTSIDLNMDILEMRAWIFKAFVYDPEVKAKVIEFIKKNGSRTNQ
YNP4_87520F077497N/AMDQEQINKIERIIEKYLFETMNNTDYELRKMDVIIKYLIYQKLKDIDETLKSIDENLFISANSDIYEK
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