NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNP14_FUBW22494_b1

Scaffold YNP14_FUBW22494_b1


Overview

Basic Information
Taxon OID2013954001 Open in IMG/M
Scaffold IDYNP14_FUBW22494_b1 Open in IMG/M
Source Dataset NameHot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)749
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.733473Long. (o)-110.70007Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F059131Metagenome134N

Sequences

Protein IDFamilyRBSSequence
YNP14_224050F059131N/AFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSSTLPVATSGVPPKFVAEEVVSARLPVKVT
YNP14_224060F006070AGGMTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLIRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVQAIQSDFYTSAAERYLSLGFNVFHRCRVLGFVRAHIDLFYGGV
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Institute for Fundamental Biomedical Research
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