Scaffold YNP19_C753

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold YNP19_C753

Scaffold YNP19_C753

Overview

Basic Information
Taxon OID	2015219000 Open in IMG/M
Scaffold ID	YNP19_C753 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP19 Cistern Spring
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1289
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.7230812	Long. (^o)	-110.7040247	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024139	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
YNP1921760	F024139	GGAGG	MAQEVAQGEALKKTLNLEITVYQDPEDKLRYKADITVDGWTISIGGWLVRKYVLDDIDMELQNAWAHLGFAERAKTEESRKLDLDMLLLHLEHALAHILAYEIAKDIPDAVIKEEICNRWWKAVGEKECAVTECADFVKEDFDACMETCKKERCGS

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