NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNP16_C6298

Scaffold YNP16_C6298


Overview

Basic Information
Taxon OID2016842003 Open in IMG/M
Scaffold IDYNP16_C6298 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5378
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.533365Long. (o)-110.849887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060939Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
YNP16_536840F060939N/AMRSPSETAIFAFVEALRGLSSAQITHVDISRRYPYTSQAPAGRDRGIAVLTHRAVDPFGGSELDAFPMWVPESGIGYANDLWGYPTAARGYVSRAGYNIVDPVPADGEPQSLDNEYPDSTDDYYLVAIRRNFWHKLLRDSRAYNTLSMALSDEQARRVRLDIRDLFLGVPMREILERLDVIIQLLQDSSDDTDEVEQLLLQLIAALGAP
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