NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNP20_FZTT40259_g1

Scaffold YNP20_FZTT40259_g1


Overview

Basic Information
Taxon OID2016842008 Open in IMG/M
Scaffold IDYNP20_FZTT40259_g1 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP20 Bath Lake Vista Annex - Purple-Sulfur Mats
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)784
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.96507Long. (o)-110.71215Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005302Metagenome / Metatranscriptome405Y
F056643Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
YNP20_22000F005302AGGAGMAHSGVIAGLYAGNFAVEISTDGTNWTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALIQAK
YNP20_22010F056643N/AGRTRAVAGADYPTIGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVSDTATALVNYIEDYVAQLRFAWLARGDVQLLNVSGIIDVVKYGERAYEGATVTTRFAHLVRAPSA
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