NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNPsite09_CeleraDRAF_57074

Scaffold YNPsite09_CeleraDRAF_57074


Overview

Basic Information
Taxon OID2022920010 Open in IMG/M
Scaffold IDYNPsite09_CeleraDRAF_57074 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP9 Dragon Spring, Norris Geyser Basin
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)692
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.7318889Long. (o)-110.7110833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061391Metagenome132N

Sequences

Protein IDFamilyRBSSequence
YNPsite09_CeleraDRAFT_85230F061391AGGTGGVSEVIQTPIDITELLTLTGRSRVLTEKVKRCYALVTNPKTFEGVAASLRGYDAASGGWFIPHATHAKQVIQPVIQECVVEPLTMVATGNDAHSLVTLAEFADMLGVDVDVRAVSLQDIIELKLSSCLPQGDGKKPPAYADLVNATSNCLREIVTKALVTLEHVGAAIAFTSRR
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