NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YNPsite15_CeleraDRAF_scf1119035608528

Scaffold YNPsite15_CeleraDRAF_scf1119035608528


Overview

Basic Information
Taxon OID2022920016 Open in IMG/M
Scaffold IDYNPsite15_CeleraDRAF_scf1119035608528 Open in IMG/M
Source Dataset NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1315
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, WY
CoordinatesLat. (o)44.538694Long. (o)-110.797972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033057Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
YNPsite15_CeleraDRAFT_465480F033057N/AGNAEWLYRAGRDWPDNRYIPDIAEALVKTADAEWFYLAGRDWPDKRYTPAIAEALIAAGNAEWLCYAGRDWPDNRYTPAIAEALVKTANAEWFYLAGRDWPDKRYTPAIAEALVKTGNAEWFYLAGRDWPDKRYTPAIAEALIAAGSAEWLYRAGRDWPDKRYTPAIAGALMAAGNAEWLCYAGRDWPDNRYIPDIAGALVKTANEALVKTEMRNGSIWPGGTGRITATSRTSPRC
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