Scaffold WWPM1086_GHCZ2246_b1

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold WWPM1086_GHCZ2246_b1

Scaffold WWPM1086_GHCZ2246_b1

Overview

Basic Information
Taxon OID	2035918001 Open in IMG/M
Scaffold ID	WWPM1086_GHCZ2246_b1 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	799
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater Plasmid Pools → Activated Sludge Microbial Communities From Commune De Morges, Switzerland

Source Dataset Sampling Location
Location Name	Visp, Switzerland
Coordinates	Lat. (^o)	46.30044	Long. (^o)	7.8594	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012842	Metagenome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
WWPMV_321440	F012842	AGAAG	MIVHGCIEIHLKDCGGWIIVMGFRVLLISQHLFPEILLEAVLGIHAGSVKIKSICIQML

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