Sample 2035918001

Overview

Basic Information
IMG/M Taxon OID	2035918001 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0056623 \| Gp0051590 \| Ga0026335
Sample Name	Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	12200307
Sequencing Scaffolds	6
Novel Protein Genes	7
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Activated Sludge Microbial Communities From Commune De Morges, Switzerland
Type	Engineered
Taxonomy	Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater Plasmid Pools → Activated Sludge Microbial Communities From Commune De Morges, Switzerland

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Visp, Switzerland
Coordinates	Lat. (^o)	46.30044	Long. (^o)	7.8594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003381	Metagenome	490	Y
F012842	Metagenome	277	Y
F053675	Metagenome	141	Y
F070808	Metagenome	122	Y
F079394	Metagenome	116	Y
F081940	Metagenome	114	Y
F084903	Metagenome	112	Y

Family

Category

Number of Sequences

3D Structure?

F003381

Metagenome

490

F012842

Metagenome

277

F053675

Metagenome

141

F070808

Metagenome

122

F079394

Metagenome

116

F081940

Metagenome

114

F084903

Metagenome

112

Scaffold	Taxonomy	Length	IMG/M Link
WWPM1086_GHCZ1763_g1	Not Available	693	Open in IMG/M
WWPM1086_GHCZ2246_b1	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	799	Open in IMG/M
WWPM1086_GHCZ4414_g1	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	726	Open in IMG/M
WWPM1086_GHCZ5933_g1	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	729	Open in IMG/M
WWPM1086_GHCZ6091_g1	Not Available	700	Open in IMG/M
WWPM1086_GHCZ7500_g1	Not Available	700	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

WWPM1086_GHCZ1763_g1

Not Available

693

Open in IMG/M

WWPM1086_GHCZ2246_b1

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta

799

Open in IMG/M

WWPM1086_GHCZ4414_g1

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus

726

Open in IMG/M

WWPM1086_GHCZ5933_g1

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta

729

Open in IMG/M

WWPM1086_GHCZ6091_g1

Not Available

700

Open in IMG/M

WWPM1086_GHCZ7500_g1

Not Available

700

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
WWPM1086_GHCZ1763_g1	WWPMV_391800	F053675	MWDLKPFHIYTLCSHEKSYVFSMWDLKPISIYTLCFQGKSYVFSMWDKKLF
WWPM1086_GHCZ2246_b1	WWPMV_321440	F012842	MIVHGCIEIHLKDCGGWIIVMGFRVLLISQHLFPEILLEAVLGIHAGSVKIKSICIQML
WWPM1086_GHCZ4414_g1	WWPMV_472090	F070808	TFKAPYFEYLVRSSAQHFTDLIVVAERIEQAIGLGKIANPIEKNGFNEKGKETEGGCQGTYCSYS
WWPM1086_GHCZ5933_g1	WWPMV_180280	F003381	VDQPINISKDPLHVPNGPITRSKSKTLKEALNALVLKVSTKSDLKGPLEYQEEALVHLIHLQEGPNPTLFGP
WWPM1086_GHCZ6091_g1	WWPMV_540390	F084903	MNIQNIIGNNLLLFAVNIWIKKPQVVNIQNTFLGIISHDYLFNHKSLKKAFIIIGDISNYKTNQT
WWPM1086_GHCZ7440_b1	WWPMV_09040	F079394	VELLSVLKTKPRGRVELVQDENKDTSVRDEFFQVSELVEPYRVAHSIDLEENSNFRVFNDSLVDVEADE
WWPM1086_GHCZ7500_g1	WWPMV_30620	F081940	LIEIRGQIAKKLKFWGQLGFKLIKFAAKDQYAKGAKL

Scaffold ID

Protein ID

Family

Sequence

WWPM1086_GHCZ1763_g1

WWPMV_391800

F053675

MWDLKPFHIYTLCSHEKSYVFSMWDLKPISIYTLCFQGKSYVFSMWDKKLF

WWPM1086_GHCZ2246_b1

WWPMV_321440

F012842

MIVHGCIEIHLKDCGGWIIVMGFRVLLISQHLFPEILLEAVLGIHAGSVKIKSICIQML

WWPM1086_GHCZ4414_g1

WWPMV_472090

F070808

TFKAPYFEYLVRSSAQHFTDLIVVAERIEQAIGLGKIANPIEKNGFNEKGKETEGGCQGTYCSYS

WWPM1086_GHCZ5933_g1

WWPMV_180280

F003381

VDQPINISKDPLHVPNGPITRSKSKTLKEALNALVLKVSTKSDLKGPLEYQEEALVHLIHLQEGPNPTLFGP

WWPM1086_GHCZ6091_g1

WWPMV_540390

F084903

MNIQNIIGNNLLLFAVNIWIKKPQVVNIQNTFLGIISHDYLFNHKSLKKAFIIIGDISNYKTNQT

WWPM1086_GHCZ7440_b1

WWPMV_09040

F079394

VELLSVLKTKPRGRVELVQDENKDTSVRDEFFQVSELVEPYRVAHSIDLEENSNFRVFNDSLVDVEADE

WWPM1086_GHCZ7500_g1

WWPMV_30620

F081940

LIEIRGQIAKKLKFWGQLGFKLIKFAAKDQYAKGAKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2035918001: Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences