NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PVR_F548DK201E4KNP

Scaffold PVR_F548DK201E4KNP


Overview

Basic Information
Taxon OID2044078004 Open in IMG/M
Scaffold IDPVR_F548DK201E4KNP Open in IMG/M
Source Dataset NameSwitchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location
Location NameUIUC Energy Farm, Urbana, Illinois 61801
CoordinatesLat. (o)40.109722Long. (o)-88.204167Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083039Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
PVR_1290680F083039N/AGRWTPGLDSKHIINQVKPALDGSSNVAVYALDVSTSATPLVFSSNLAANTFGPFIEITNVDFTTEAPPVLAFDPPRNQAILGHDKPSPFIVPPVIGFVDLISGVFIEKTGLGLGVINGIAVDSEDGILCTDTSFDSAVQFTT
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