NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold mhc9b_MHC9B_contig09749

Scaffold mhc9b_MHC9B_contig09749


Overview

Basic Information
Taxon OID2051223005 Open in IMG/M
Scaffold IDmhc9b_MHC9B_contig09749 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Orebro University Hospital, Sweden - Sample 10373
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3562
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp.(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Source Dataset Sampling Location
Location NameOrebro University Hospital, Sweden
CoordinatesLat. (o)59.274717Long. (o)15.230656Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099269Metagenome103N

Sequences

Protein IDFamilyRBSSequence
MHC9B_contig09749_metagene_gene_3F099269N/ALPTHAKGGLRGDAEASFFVHGVLLSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV

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