NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBSWBV_contig01917

Scaffold GBSWBV_contig01917


Overview

Basic Information
Taxon OID2058419004 Open in IMG/M
Scaffold IDGBSWBV_contig01917 Open in IMG/M
Source Dataset NameHot spring viral communities from Great Boiling Spring, Nevada -
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1415
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Source Dataset Sampling Location
Location NameGreat Boiling Spring, Nevada
CoordinatesLat. (o)40.65833Long. (o)-119.37772Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104050Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
GBSWBV_00485100F104050GAGVSEERKCIIRLRKYCVVYEALSDSEKEKYGSKDYVITYCALCIKTYYAKAKMKLINRYSVVNTL
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