Basic Information | |
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Taxon OID | 2067725009 Open in IMG/M |
Scaffold ID | PermFrostAlaska_NODE_24306_len_3284_cov_16_520098 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from central Alaska, USA - Permafrost field sample |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3334 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Central Alaska, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Alaska, USA | |||||||
Coordinates | Lat. (o) | 65.7906 | Long. (o) | -149.9102 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F088755 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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draft_perm_00118480 | F088755 | AGGAGG | MDEYAKVIVVAGQAEAERIVQALGATGITAFFRATTGLEGMFQIMAVQSRLDEARDVASMFQGCECQQEGSRDEPEVHSQTGKRVHRRGIVE |
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