Sample 2067725009

Overview

Basic Information
IMG/M Taxon OID	2067725009 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045770 \| Gp0051722 \| Ga0010661
Sample Name	Permafrost microbial communities from central Alaska, USA - Permafrost field sample
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	9656814
Sequencing Scaffolds	22
Novel Protein Genes	27
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → Methanoculleus sediminis	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	1
All Organisms → cellular organisms → Archaea	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum	1
All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Permafrost Microbial Communities From Central Alaska, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Central Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → polar → permafrost
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Alaska, USA
Coordinates	Lat. (^o)	65.7906	Long. (^o)	-149.9102	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F025185	Metagenome	203	Y
F032019	Metagenome / Metatranscriptome	181	Y
F037492	Metagenome	168	Y
F050314	Metagenome	145	Y
F050579	Metagenome / Metatranscriptome	145	Y
F051904	Metagenome	143	N
F064733	Metagenome / Metatranscriptome	128	Y
F078013	Metagenome	117	Y
F079367	Metagenome	116	Y
F079371	Metagenome	116	Y
F080207	Metagenome	115	Y
F084901	Metagenome	112	N
F085859	Metagenome	111	Y
F086912	Metagenome	110	N
F088755	Metagenome	109	N
F092956	Metagenome	107	Y
F096256	Metagenome	105	N
F100042	Metagenome	103	Y
F104110	Metagenome / Metatranscriptome	101	N
F106196	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F025185

Metagenome

203

F032019

Metagenome / Metatranscriptome

181

F037492

Metagenome

168

F050314

Metagenome

145

F050579

Metagenome / Metatranscriptome

145

F051904

Metagenome

143

F064733

Metagenome / Metatranscriptome

128

F078013

Metagenome

117

F079367

Metagenome

116

F079371

Metagenome

116

F080207

Metagenome

115

F084901

Metagenome

112

F085859

Metagenome

111

F086912

Metagenome

110

F088755

Metagenome

109

F092956

Metagenome

107

F096256

Metagenome

105

F100042

Metagenome

103

F104110

Metagenome / Metatranscriptome

101

F106196

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
PermFrostAlaska_NODE_12136_len_1274_cov_13_419937	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
PermFrostAlaska_NODE_13875_len_7936_cov_21_358494	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → Methanoculleus sediminis	7986	Open in IMG/M
PermFrostAlaska_NODE_13882_len_15371_cov_30_542385	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	15421	Open in IMG/M
PermFrostAlaska_NODE_14446_len_5684_cov_36_375793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	5734	Open in IMG/M
PermFrostAlaska_NODE_15870_len_6227_cov_29_975109	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella	6277	Open in IMG/M
PermFrostAlaska_NODE_15959_len_4468_cov_36_764771	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	4518	Open in IMG/M
PermFrostAlaska_NODE_16194_len_8398_cov_25_565849	All Organisms → cellular organisms → Archaea	8448	Open in IMG/M
PermFrostAlaska_NODE_19238_len_1210_cov_25_718182	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
PermFrostAlaska_NODE_2383_len_1347_cov_22_542688	Not Available	1397	Open in IMG/M
PermFrostAlaska_NODE_24306_len_3284_cov_16_520098	All Organisms → cellular organisms → Bacteria	3334	Open in IMG/M
PermFrostAlaska_NODE_24476_len_1061_cov_22_882187	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum	1111	Open in IMG/M
PermFrostAlaska_NODE_24532_len_1110_cov_15_221622	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
PermFrostAlaska_NODE_24949_len_9431_cov_20_605238	All Organisms → cellular organisms → Bacteria	9481	Open in IMG/M
PermFrostAlaska_NODE_26358_len_2370_cov_19_880169	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae	2420	Open in IMG/M
PermFrostAlaska_NODE_395_len_3744_cov_32_235577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3794	Open in IMG/M
PermFrostAlaska_NODE_3966_len_2771_cov_23_367376	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2821	Open in IMG/M
PermFrostAlaska_NODE_5859_len_1109_cov_21_396753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1159	Open in IMG/M
PermFrostAlaska_NODE_6248_len_67318_cov_34_803989	All Organisms → cellular organisms → Archaea → Euryarchaeota	67368	Open in IMG/M
PermFrostAlaska_NODE_8264_len_7746_cov_31_669765	All Organisms → cellular organisms → Archaea	7796	Open in IMG/M
PermFrostAlaska_NODE_8767_len_5726_cov_23_502270	Not Available	5776	Open in IMG/M
PermFrostAlaska_NODE_8972_len_1041_cov_31_531219	All Organisms → cellular organisms → Archaea → Euryarchaeota	1091	Open in IMG/M
PermFrostAlaska_NODE_9795_len_7077_cov_35_521126	All Organisms → cellular organisms → Archaea → Euryarchaeota	7127	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

PermFrostAlaska_NODE_12136_len_1274_cov_13_419937

All Organisms → cellular organisms → Bacteria

1324

Open in IMG/M

PermFrostAlaska_NODE_13875_len_7936_cov_21_358494

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → Methanoculleus sediminis

7986

Open in IMG/M

PermFrostAlaska_NODE_13882_len_15371_cov_30_542385

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia

15421

Open in IMG/M

PermFrostAlaska_NODE_14446_len_5684_cov_36_375793

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium

5734

Open in IMG/M

PermFrostAlaska_NODE_15870_len_6227_cov_29_975109

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella

6277

Open in IMG/M

PermFrostAlaska_NODE_15959_len_4468_cov_36_764771

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales

4518

Open in IMG/M

PermFrostAlaska_NODE_16194_len_8398_cov_25_565849

All Organisms → cellular organisms → Archaea

8448

Open in IMG/M

PermFrostAlaska_NODE_19238_len_1210_cov_25_718182

All Organisms → cellular organisms → Bacteria

1260

Open in IMG/M

PermFrostAlaska_NODE_2383_len_1347_cov_22_542688

Not Available

1397

Open in IMG/M

PermFrostAlaska_NODE_24306_len_3284_cov_16_520098

All Organisms → cellular organisms → Bacteria

3334

Open in IMG/M

PermFrostAlaska_NODE_24476_len_1061_cov_22_882187

All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum

1111

Open in IMG/M

PermFrostAlaska_NODE_24532_len_1110_cov_15_221622

All Organisms → cellular organisms → Bacteria

1160

Open in IMG/M

PermFrostAlaska_NODE_24949_len_9431_cov_20_605238

All Organisms → cellular organisms → Bacteria

9481

Open in IMG/M

PermFrostAlaska_NODE_26358_len_2370_cov_19_880169

All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae

2420

Open in IMG/M

PermFrostAlaska_NODE_395_len_3744_cov_32_235577

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales

3794

Open in IMG/M

PermFrostAlaska_NODE_3966_len_2771_cov_23_367376

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

2821

Open in IMG/M

PermFrostAlaska_NODE_5859_len_1109_cov_21_396753

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1159

Open in IMG/M

PermFrostAlaska_NODE_6248_len_67318_cov_34_803989

All Organisms → cellular organisms → Archaea → Euryarchaeota

67368

Open in IMG/M

PermFrostAlaska_NODE_8264_len_7746_cov_31_669765

All Organisms → cellular organisms → Archaea

7796

Open in IMG/M

PermFrostAlaska_NODE_8767_len_5726_cov_23_502270

Not Available

5776

Open in IMG/M

PermFrostAlaska_NODE_8972_len_1041_cov_31_531219

All Organisms → cellular organisms → Archaea → Euryarchaeota

1091

Open in IMG/M

PermFrostAlaska_NODE_9795_len_7077_cov_35_521126

All Organisms → cellular organisms → Archaea → Euryarchaeota

7127

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
PermFrostAlaska_NODE_12136_len_1274_cov_13_419937	draft_perm_00015450	F037492	MGRAPGDRGPLARVSRLATMPDEPRTYANTACPYCSLELDPLPKAKKRCPSCGQPIYARMGPDGITHLLQVGDLPALDQAWAEHHEARIYRAKVAALGVDFDALEAEMHQRDARHSARDVWWSAVNEYILGALARLDWFAAQAGYFDHARDLADHGQPWAEVARAGFKMELRQYLGDVESTDILACKCRVCQLDAGRRLLIAAEISAPTLPHADCEEGWCACDYLPSFA
PermFrostAlaska_NODE_12678_len_3424_cov_30_256426	draft_perm_00037910	F104110	MYLGKDVTTEDSMELGKVSDVSISSSGEVYYLVEKGKDPNIRYYFTQEDVLASNERVVTRSVGEFTDDIAKRSHFLCALYGVEVRDTTNNRVGVLDNFVASPQGALVVIEDAKGTALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLSQSEEDRIITDQALID
PermFrostAlaska_NODE_12678_len_3424_cov_30_256426	draft_perm_00037920	F104110	MYLGKDVTTEDDMGLGKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID
PermFrostAlaska_NODE_13875_len_7936_cov_21_358494	draft_perm_00084460	F080207	MTVRKTSILLALCFVLIGTITPTTEVTATPTDDSAVQRFDIGIGDYKYGELTVDTLTDQFVANAHVGKQLADEQVTLVARNDGGQPALIAVARSTVNNGGRVHWEGTLTAAQLTWIHVYGDGAVFFVRGNY
PermFrostAlaska_NODE_13882_len_15371_cov_30_542385	draft_perm_00085150	F084901	METHRKTYYSTDRREQYKKRAFEADLLKLAVAIVAELLIFFVWFDGPARERYEILVHIALPICIVLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFVPFIRRPKTALVAGYAACAIWASHLIVDARKYTPIQNVGGYLWSDLVLYALLLTVIGFLLLQLLRFSETNEMARSYD
PermFrostAlaska_NODE_14446_len_5684_cov_36_375793	draft_perm_00102760	F085859	MKDGKTGEHKPKEPSFLTGQEALIYEIERACGQLNKLKGLQLNEPLFRAVAAEIRAHMDHLGLSLIELTEPCG
PermFrostAlaska_NODE_15870_len_6227_cov_29_975109	draft_perm_00128740	F092956	MPSKPSRMNDSDDRMLARYQHLYNKARKVNAFQLQNIQRAETREMCISVLLKAVVICDDALRDMGIKE
PermFrostAlaska_NODE_15959_len_4468_cov_36_764771	draft_perm_00131790	F096256	LFYAHLLLPRVWGEAVHMTSRKLQAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS
PermFrostAlaska_NODE_16194_len_8398_cov_25_565849	draft_perm_00008360	F085859	MNDEKTRERKPKEPSFVTGQEALIYEVERACGQLNKLKELQLNDPLLRAVAAEIRAHMDHLGLSLIELTEPCG
PermFrostAlaska_NODE_19238_len_1210_cov_25_718182	draft_perm_00105990	F064733	MTITQTIYVELLDEGVVVYRPVEATPDPDGVLRLPATAPADEHG
PermFrostAlaska_NODE_2383_len_1347_cov_22_542688	draft_perm_00051680	F050579	MKKQPDKTPIKSLRDAYQVSGFRVRARIDSYDELEHPAFVITLDRRSKKRSAADVGRFAAAVTTNGGDGRAILDAAIGKSISTFTCAA
PermFrostAlaska_NODE_24306_len_3284_cov_16_520098	draft_perm_00118480	F088755	MDEYAKVIVVAGQAEAERIVQALGATGITAFFRATTGLEGMFQIMAVQSRLDEARDVASMFQGCECQQEGSRDEPEVHSQTGKRVHRRGIVE
PermFrostAlaska_NODE_24476_len_1061_cov_22_882187	draft_perm_00005060	F050314	MSDMTHLVRPDLHVALDCPVDWTVMELDEQAGLRASSPTDPRVALQVTFDESGSPLDEVSERLRNGLPEDALREQGTLRRGKVDADGRASPVDPPLEALIFRARDGSFVYRVLVAEDTGHRWTVRLETLQRKEWWQESQALETMLASLLLL
PermFrostAlaska_NODE_24532_len_1110_cov_15_221622	draft_perm_00011830	F051904	MMARRWLLVVLCGVIVLTLVTTLVFREFDFGTSLPSGFPDDVPIVPGTITSCKTARSDDLVRVVEVRIQSGLPFQDIVQFYRTAFASGATEHWNLPEFPLSDPDATETSSNALFGKNTVVVIINATGATTSVLVQVRGTSIFTLPR
PermFrostAlaska_NODE_24949_len_9431_cov_20_605238	draft_perm_00053700	F050314	MSDMTHLVRPDLHVALDCPVDWTVMELDEQAGLRASNPTDPRVALQVTYDESSSALDEVSERLRNGLPKDALREPGTLRKGRVDADGQAHPDGPPVEALTFSARDGSFVYRVLVAEDAGHRWTVRLETLQRKEWWQESRTLERMLASLLLL
PermFrostAlaska_NODE_26358_len_2370_cov_19_880169	draft_perm_00083560	F086912	QQAEVEAKGVIKVARETVQTIQGDAESSLAEVRASVELSLQRRLDAIDQETNQHMKLAEDQLRRDLKEQLENLEDRAQDRRPATLDLLLSRLTAR
PermFrostAlaska_NODE_395_len_3744_cov_32_235577	draft_perm_00096110	F100042	EAVMARPTGVGRAISTCTIPIEGRDEWLAAARRLA
PermFrostAlaska_NODE_3966_len_2771_cov_23_367376	draft_perm_00091400	F025185	MHIEQLPSVGEVVSALEAQGQRLSDADLVGASRSALTSARDALPDGWTHRRRASRWPWVACAILGTTILGLVFLTPAFRRWAASRRASGRPDGVMGDATQAPAMSAADEMGDLVYPAESDALDTAPLLDGGADN
PermFrostAlaska_NODE_3966_len_2771_cov_23_367376	draft_perm_00091410	F079371	VTRLARLVRIVTLPETRGVIVAAAHSETLRDIRQRAVHDRAALVRDLRNPANARDLVRSAARHPAARELASAGLMFLPLRYLPVGWAATWVAHRVVRRHLDPPAAVLDASDFGAGRPLKNVTHEAPKV
PermFrostAlaska_NODE_5859_len_1109_cov_21_396753	draft_perm_00131160	F032019	MQREYAIRQIAKREGFSLEKHGEDSYRLINERLNVIVFGLDGVPLETIASFLEKPESLANSPDAHHR
PermFrostAlaska_NODE_6248_len_67318_cov_34_803989	draft_perm_00017650	F079367	MKTPFKRGGASGDKFRHKDDIAWWMSRYELLCTTEAEDVVRKAMAKLNDAVALRDQALDLVAQLDQDISEAENEITRLGGAAFIKKSEPMIEELKVYFDNLYESLKRARPEEVTLAARKGRKLE
PermFrostAlaska_NODE_6248_len_67318_cov_34_803989	draft_perm_00017670	F078013	MTQGTERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSFIMPKVVPHYKQFDGVKTIQRLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDAAKKL
PermFrostAlaska_NODE_8264_len_7746_cov_31_669765	draft_perm_00125580	F092956	MPSKVNWMHDSDNRMLARYQHLHKSALKVKASQLQKIQRTETREVCISVLLKAVVICNDTLKEMGFEDYEAGHEQSLLEKSS
PermFrostAlaska_NODE_8264_len_7746_cov_31_669765	draft_perm_00125660	F106196	MTEDDKNEIIKCTVSCPECGAEMVCTHEDPKHEEKHRCEKGHEWT
PermFrostAlaska_NODE_8767_len_5726_cov_23_502270	draft_perm_00024990	F096256	LFFGYDKTADSWVVATAASGATIITQPXXXTQIKPKTYVGAYADAKGQKWNFTVELFSAENTSYNRYFELMKNKSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDETAESWVVATAASGATIITQTTSALS
PermFrostAlaska_NODE_8972_len_1041_cov_31_531219	draft_perm_00036380	F106196	MTEDDENETIKCTVSCPECGAEMICTHEDSKHEEKHRCEKGHEWA
PermFrostAlaska_NODE_9795_len_7077_cov_35_521126	draft_perm_00075910	F080207	MTTRKTSIVIALCFVLIGTLTATKDVTAASTDDSAFQRFDIAIGDYKYGELTIDPATDQFFAIANVGKGSADECVTLVAQKDGASPQHISIAHSTVSTEGRVHWEGPLTTAQLDWINSYGYGAVFFARGAN

Scaffold ID

Protein ID

Family

Sequence

PermFrostAlaska_NODE_12136_len_1274_cov_13_419937

draft_perm_00015450

F037492

MGRAPGDRGPLARVSRLATMPDEPRTYANTACPYCSLELDPLPKAKKRCPSCGQPIYARMGPDGITHLLQVGDLPALDQAWAEHHEARIYRAKVAALGVDFDALEAEMHQRDARHSARDVWWSAVNEYILGALARLDWFAAQAGYFDHARDLADHGQPWAEVARAGFKMELRQYLGDVESTDILACKCRVCQLDAGRRLLIAAEISAPTLPHADCEEGWCACDYLPSFA

PermFrostAlaska_NODE_12678_len_3424_cov_30_256426

draft_perm_00037910

F104110

MYLGKDVTTEDSMELGKVSDVSISSSGEVYYLVEKGKDPNIRYYFTQEDVLASNERVVTRSVGEFTDDIAKRSHFLCALYGVEVRDTTNNRVGVLDNFVASPQGALVVIEDAKGTALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLSQSEEDRIITDQALID

PermFrostAlaska_NODE_12678_len_3424_cov_30_256426

draft_perm_00037920

F104110

MYLGKDVTTEDDMGLGKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID

PermFrostAlaska_NODE_13875_len_7936_cov_21_358494

draft_perm_00084460

F080207

MTVRKTSILLALCFVLIGTITPTTEVTATPTDDSAVQRFDIGIGDYKYGELTVDTLTDQFVANAHVGKQLADEQVTLVARNDGGQPALIAVARSTVNNGGRVHWEGTLTAAQLTWIHVYGDGAVFFVRGNY

PermFrostAlaska_NODE_13882_len_15371_cov_30_542385

draft_perm_00085150

F084901

METHRKTYYSTDRREQYKKRAFEADLLKLAVAIVAELLIFFVWFDGPARERYEILVHIALPICIVLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFVPFIRRPKTALVAGYAACAIWASHLIVDARKYTPIQNVGGYLWSDLVLYALLLTVIGFLLLQLLRFSETNEMARSYD

PermFrostAlaska_NODE_14446_len_5684_cov_36_375793

draft_perm_00102760

F085859

MKDGKTGEHKPKEPSFLTGQEALIYEIERACGQLNKLKGLQLNEPLFRAVAAEIRAHMDHLGLSLIELTEPCG

PermFrostAlaska_NODE_15870_len_6227_cov_29_975109

draft_perm_00128740

F092956

MPSKPSRMNDSDDRMLARYQHLYNKARKVNAFQLQNIQRAETREMCISVLLKAVVICDDALRDMGIKE

PermFrostAlaska_NODE_15959_len_4468_cov_36_764771

draft_perm_00131790

F096256

LFYAHLLLPRVWGEAVHMTSRKLQAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS

PermFrostAlaska_NODE_16194_len_8398_cov_25_565849

draft_perm_00008360

F085859

MNDEKTRERKPKEPSFVTGQEALIYEVERACGQLNKLKELQLNDPLLRAVAAEIRAHMDHLGLSLIELTEPCG

PermFrostAlaska_NODE_19238_len_1210_cov_25_718182

draft_perm_00105990

F064733

MTITQTIYVELLDEGVVVYRPVEATPDPDGVLRLPATAPADEHG

PermFrostAlaska_NODE_2383_len_1347_cov_22_542688

draft_perm_00051680

F050579

MKKQPDKTPIKSLRDAYQVSGFRVRARIDSYDELEHPAFVITLDRRSKKRSAADVGRFAAAVTTNGGDGRAILDAAIGKSISTFTCAA

PermFrostAlaska_NODE_24306_len_3284_cov_16_520098

draft_perm_00118480

F088755

MDEYAKVIVVAGQAEAERIVQALGATGITAFFRATTGLEGMFQIMAVQSRLDEARDVASMFQGCECQQEGSRDEPEVHSQTGKRVHRRGIVE

PermFrostAlaska_NODE_24476_len_1061_cov_22_882187

draft_perm_00005060

F050314

MSDMTHLVRPDLHVALDCPVDWTVMELDEQAGLRASSPTDPRVALQVTFDESGSPLDEVSERLRNGLPEDALREQGTLRRGKVDADGRASPVDPPLEALIFRARDGSFVYRVLVAEDTGHRWTVRLETLQRKEWWQESQALETMLASLLLL

PermFrostAlaska_NODE_24532_len_1110_cov_15_221622

draft_perm_00011830

F051904

MMARRWLLVVLCGVIVLTLVTTLVFREFDFGTSLPSGFPDDVPIVPGTITSCKTARSDDLVRVVEVRIQSGLPFQDIVQFYRTAFASGATEHWNLPEFPLSDPDATETSSNALFGKNTVVVIINATGATTSVLVQVRGTSIFTLPR

PermFrostAlaska_NODE_24949_len_9431_cov_20_605238

draft_perm_00053700

F050314

MSDMTHLVRPDLHVALDCPVDWTVMELDEQAGLRASNPTDPRVALQVTYDESSSALDEVSERLRNGLPKDALREPGTLRKGRVDADGQAHPDGPPVEALTFSARDGSFVYRVLVAEDAGHRWTVRLETLQRKEWWQESRTLERMLASLLLL

PermFrostAlaska_NODE_26358_len_2370_cov_19_880169

draft_perm_00083560

F086912

QQAEVEAKGVIKVARETVQTIQGDAESSLAEVRASVELSLQRRLDAIDQETNQHMKLAEDQLRRDLKEQLENLEDRAQDRRPATLDLLLSRLTAR

PermFrostAlaska_NODE_395_len_3744_cov_32_235577

draft_perm_00096110

F100042

EAVMARPTGVGRAISTCTIPIEGRDEWLAAARRLA

PermFrostAlaska_NODE_3966_len_2771_cov_23_367376

draft_perm_00091400

F025185

MHIEQLPSVGEVVSALEAQGQRLSDADLVGASRSALTSARDALPDGWTHRRRASRWPWVACAILGTTILGLVFLTPAFRRWAASRRASGRPDGVMGDATQAPAMSAADEMGDLVYPAESDALDTAPLLDGGADN

PermFrostAlaska_NODE_3966_len_2771_cov_23_367376

draft_perm_00091410

F079371

VTRLARLVRIVTLPETRGVIVAAAHSETLRDIRQRAVHDRAALVRDLRNPANARDLVRSAARHPAARELASAGLMFLPLRYLPVGWAATWVAHRVVRRHLDPPAAVLDASDFGAGRPLKNVTHEAPKV

PermFrostAlaska_NODE_5859_len_1109_cov_21_396753

draft_perm_00131160

F032019

MQREYAIRQIAKREGFSLEKHGEDSYRLINERLNVIVFGLDGVPLETIASFLEKPESLANSPDAHHR

PermFrostAlaska_NODE_6248_len_67318_cov_34_803989

draft_perm_00017650

F079367

MKTPFKRGGASGDKFRHKDDIAWWMSRYELLCTTEAEDVVRKAMAKLNDAVALRDQALDLVAQLDQDISEAENEITRLGGAAFIKKSEPMIEELKVYFDNLYESLKRARPEEVTLAARKGRKLE

PermFrostAlaska_NODE_6248_len_67318_cov_34_803989

draft_perm_00017670

F078013

MTQGTERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSFIMPKVVPHYKQFDGVKTIQRLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDAAKKL

PermFrostAlaska_NODE_8264_len_7746_cov_31_669765

draft_perm_00125580

F092956

MPSKVNWMHDSDNRMLARYQHLHKSALKVKASQLQKIQRTETREVCISVLLKAVVICNDTLKEMGFEDYEAGHEQSLLEKSS

PermFrostAlaska_NODE_8264_len_7746_cov_31_669765

draft_perm_00125660

F106196

MTEDDKNEIIKCTVSCPECGAEMVCTHEDPKHEEKHRCEKGHEWT

PermFrostAlaska_NODE_8767_len_5726_cov_23_502270

draft_perm_00024990

F096256

LFFGYDKTADSWVVATAASGATIITQPXXXTQIKPKTYVGAYADAKGQKWNFTVELFSAENTSYNRYFELMKNKSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDETAESWVVATAASGATIITQTTSALS

PermFrostAlaska_NODE_8972_len_1041_cov_31_531219

draft_perm_00036380

F106196

MTEDDENETIKCTVSCPECGAEMICTHEDSKHEEKHRCEKGHEWA

PermFrostAlaska_NODE_9795_len_7077_cov_35_521126

draft_perm_00075910

F080207

MTTRKTSIVIALCFVLIGTLTATKDVTAASTDDSAFQRFDIAIGDYKYGELTIDPATDQFFAIANVGKGSADECVTLVAQKDGASPQHISIAHSTVSTEGRVHWEGPLTTAQLDWINSYGYGAVFFARGAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2067725009: Permafrost microbial communities from central Alaska, USA - Permafrost field sample

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences