Scaffold PermFrostAlaska_NODE_3966_len_2771_cov_23_367376

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PermFrostAlaska_NODE_3966_len_2771_cov_23_367376

Scaffold PermFrostAlaska_NODE_3966_len_2771_cov_23_367376

Overview

Basic Information
Taxon OID	2067725009 Open in IMG/M
Scaffold ID	PermFrostAlaska_NODE_3966_len_2771_cov_23_367376 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from central Alaska, USA - Permafrost field sample
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2821
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Central Alaska, Usa

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	65.7906	Long. (^o)	-149.9102	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025185	Metagenome	203	Y
F079371	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_perm_00091400	F025185	AGGAGG	MHIEQLPSVGEVVSALEAQGQRLSDADLVGASRSALTSARDALPDGWTHRRRASRWPWVACAILGTTILGLVFLTPAFRRWAASRRASGRPDGVMGDATQAPAMSAADEMGDLVYPAESDALDTAPLLDGGADN
draft_perm_00091410	F079371	N/A	VTRLARLVRIVTLPETRGVIVAAAHSETLRDIRQRAVHDRAALVRDLRNPANARDLVRSAARHPAARELASAGLMFLPLRYLPVGWAATWVAHRVVRRHLDPPAAVLDASDFGAGRPLKNVTHEAPKV

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