NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PermFrostAlaska_NODE_6248_len_67318_cov_34_803989

Scaffold PermFrostAlaska_NODE_6248_len_67318_cov_34_803989


Overview

Basic Information
Taxon OID2067725009 Open in IMG/M
Scaffold IDPermFrostAlaska_NODE_6248_len_67318_cov_34_803989 Open in IMG/M
Source Dataset NamePermafrost microbial communities from central Alaska, USA - Permafrost field sample
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67368
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (55.84%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Central Alaska, Usa

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)65.7906Long. (o)-149.9102Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078013Metagenome117Y
F079367Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
draft_perm_00017650F079367AGGAGMKTPFKRGGASGDKFRHKDDIAWWMSRYELLCTTEAEDVVRKAMAKLNDAVALRDQALDLVAQLDQDISEAENEITRLGGAAFIKKSEPMIEELKVYFDNLYESLKRARPEEVTLAARKGRKLE
draft_perm_00017670F078013GGAMTQGTERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSFIMPKVVPHYKQFDGVKTIQRLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDAAKKL
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