Scaffold prs_FIHLEPW02SOX2J

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold prs_FIHLEPW02SOX2J

Scaffold prs_FIHLEPW02SOX2J

Overview

Basic Information
Taxon OID	2070309004 Open in IMG/M
Scaffold ID	prs_FIHLEPW02SOX2J Open in IMG/M
Source Dataset Name	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	515
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost → Green-Waste Compost Microbial Community At University Of California, Davis, Usa, From Solid State Bioreactor

Source Dataset Sampling Location
Location Name	Luquillo Rain Forest, Puerto Rico
Coordinates	Lat. (^o)	18.311389	Long. (^o)	-65.8375	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039183	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
prs_02171790	F039183	GGGGG	MKKIFVALVATVVAVGMAGCVGVGKGKAPPVVTKG

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