Scaffold OSPB_contig02554

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold OSPB_contig02554

Scaffold OSPB_contig02554

Overview

Basic Information
Taxon OID	2077657023 Open in IMG/M
Scaffold ID	OSPB_contig02554 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - sample OSP_B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1532
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	One Hundred Springs Plain, Yellowstone National Park
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.711389	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070317	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
OSPB_00650410	F070317	GAG	MSAMEELKELNLERIVKDAQEGEVCVVNKILKGKLTDLMPLIKDPASLSQKAMEFIQNRGDDIFYLFQCTTRGGRNVKLLVRQSFDPRSTFYQLMKKYKTIKVGDEVNVFYNPEKRRYDFLL

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