NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OSPD_GOCTFRE02JDJ8X

Scaffold OSPD_GOCTFRE02JDJ8X


Overview

Basic Information
Taxon OID2084038022 Open in IMG/M
Scaffold IDOSPD_GOCTFRE02JDJ8X Open in IMG/M
Source Dataset NameHot spring microbial community from Yellowstone National Park, USA - OSP
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Community From Yellowstone National Park, Us

Source Dataset Sampling Location
Location NameYellowstone National Park
CoordinatesLat. (o)44.560318Long. (o)-110.708889Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023140Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
OSPD_00682290F023140N/ALHRRILLSNVFIGLVTVPVYIVLKPLPFFAVFGVGVLTTLTVLILFFYFLGVKFVGTWAVLQKFAVTLPTSFVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLLIM
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