NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPICI_9264786

Scaffold GPICI_9264786


Overview

Basic Information
Taxon OID2088090015 Open in IMG/M
Scaffold IDGPICI_9264786 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1626
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013551Metagenome270Y
F041333Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
GPICI_01623920F041333N/AMVAEGRYFAPETVKDMQVALDLAWSSLSPEQQAQSSKTLLARRILDAAAAGERGPARLLMLALRSAPQNAGGYSHRQRRRRG
GPICI_01623930F013551GGAGGMMDTVLFTDHDIVVFAITATAAALLLSVLGLATTQQIRSDMKDQFRREGAERQAAASKVYVRLEADTSRDANEWASLKDEFNAAMREGAESIEYMLDEQFRRRFGELMYRTARARRRESLAA

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