Scaffold B3_GZBA_v_NODE_7326_len_1014_cov_11_917160

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B3_GZBA_v_NODE_7326_len_1014_cov_11_917160

Scaffold B3_GZBA_v_NODE_7326_len_1014_cov_11_917160

Overview

Basic Information
Taxon OID	2124908037 Open in IMG/M
Scaffold ID	B3_GZBA_v_NODE_7326_len_1014_cov_11_917160 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1064
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041148	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
B3_GZBA_v_00220290	F041148	N/A	MLVIYVAVSHRVTCNGPAIKGVSVAERVKAGAVKPNRGRVPVPAGKSEAWRGFCRQVASFLSFTSVAVQGLLGAGHLSPYTGLIESSGAVTVMSPYTVFS

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