NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2124908037

2124908037: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3



Overview

Basic Information
IMG/M Taxon OID2124908037 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063124 | Gp0051911 | Ga0026286
Sample NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22292634
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Permafrost In Bonanza Creek, Alaska
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → solid layer → permafrost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)N/ADepth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014092Metagenome / Metatranscriptome266Y
F014525Metagenome262Y
F015231Metagenome / Metatranscriptome256Y
F021023Metagenome221Y
F024934Metagenome204Y
F036991Metagenome / Metatranscriptome169Y
F041148Metagenome160Y
F054136Metagenome140Y
F054241Metagenome140Y
F064047Metagenome / Metatranscriptome129Y
F074797Metagenome / Metatranscriptome119Y
F079367Metagenome116Y
F092929Metagenome107Y
F096256Metagenome105N
F099181Metagenome / Metatranscriptome103Y
F100040Metagenome103N
F106196Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
B3_GZBA_v_NODE_10239_len_16142_cov_21_045038Not Available16192Open in IMG/M
B3_GZBA_v_NODE_12190_len_1571_cov_8_711649All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1621Open in IMG/M
B3_GZBA_v_NODE_12899_len_1185_cov_12_583122Not Available1235Open in IMG/M
B3_GZBA_v_NODE_14236_len_858_cov_12_911422All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.908Open in IMG/M
B3_GZBA_v_NODE_19575_len_608_cov_8_595395Not Available658Open in IMG/M
B3_GZBA_v_NODE_19991_len_684_cov_9_483918All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium734Open in IMG/M
B3_GZBA_v_NODE_21276_len_1064_cov_6_471805All Organisms → cellular organisms → Bacteria1114Open in IMG/M
B3_GZBA_v_NODE_21830_len_579_cov_7_844560Not Available629Open in IMG/M
B3_GZBA_v_NODE_2784_len_9992_cov_18_140612Not Available10042Open in IMG/M
B3_GZBA_v_NODE_34913_len_1205_cov_7_200830All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1255Open in IMG/M
B3_GZBA_v_NODE_3562_len_2179_cov_11_826526All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2229Open in IMG/M
B3_GZBA_v_NODE_3713_len_941_cov_13_595112Not Available991Open in IMG/M
B3_GZBA_v_NODE_41937_len_714_cov_5_201681Not Available764Open in IMG/M
B3_GZBA_v_NODE_47712_len_19735_cov_18_309046Not Available19785Open in IMG/M
B3_GZBA_v_NODE_4886_len_646_cov_10_162539Not Available696Open in IMG/M
B3_GZBA_v_NODE_6702_len_1326_cov_15_801660All Organisms → cellular organisms → Bacteria1376Open in IMG/M
B3_GZBA_v_NODE_7326_len_1014_cov_11_917160Not Available1064Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
B3_GZBA_v_NODE_10239_len_16142_cov_21_045038B3_GZBA_v_00048800F096256MTSRKLQAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIGXXXFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS
B3_GZBA_v_NODE_12190_len_1571_cov_8_711649B3_GZBA_v_00322350F054241MRIEETITAEXXXXRRKQFVALLGTCQDCGQPVTEGQEFFRSDDGIRHALCFFDPAFAKRERELKSKTAQ
B3_GZBA_v_NODE_12899_len_1185_cov_12_583122B3_GZBA_v_00043150F021023MSQDKTIPVSVIAFRAEDYSPDGKNVIISLTTKYSIVDRKFSVPIECFHDLILDLQRLNTAASATSIEAPIQPAVAPSPADDQNRLSIAV
B3_GZBA_v_NODE_14236_len_858_cov_12_911422B3_GZBA_v_00234960F064047MTLKKPSRAGLVALALGVLLGLFLSVAAYNTSYAQPAPGAAP
B3_GZBA_v_NODE_19575_len_608_cov_8_595395B3_GZBA_v_00152910F079367MATNLDKAGAMIKKMLTRGDVADDKFQHKDDIAWWMGRYETLITTEAEAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAESEITRLGGAAFIEKSEPMIEELKVYYDNLYESLKRSRPEKVEK
B3_GZBA_v_NODE_19991_len_684_cov_9_483918B3_GZBA_v_00196590F014525MKQLQLFIRAAATLALLYAGAPFPSERASAQVFDFGQIDAFESMGTGTQRGGSPPKTIVDDGDWHTVFFTILESDSDAKIYWKSKDGDQTTIIHGPSVKAFQTAGQFKVEALGNENHSFKYGYVLFRLKNSKGEKT
B3_GZBA_v_NODE_21276_len_1064_cov_6_471805B3_GZBA_v_00193940F099181KTLPKKDKPDTENKKPNQLDNFIKTGKTKQFFGYPAEEYSKEFTKEENGQMHSGTMSAWYAKVDFDPEMMFSLGVGSMAGGQSQSKMNQSHPNNMLGMGLTQKNYLLVEMNFAENGGKSGTAMKVVSIEKTSFSKSTDGYYIKNYAGMSMMEMMQKESEEK
B3_GZBA_v_NODE_21830_len_579_cov_7_844560B3_GZBA_v_00028040F074797MNESEPSMRCRETVLSVKTTGSLMLGEECGGYLFTGYMADGIKKA
B3_GZBA_v_NODE_27809_len_2530_cov_17_105928B3_GZBA_v_00225880F100040MHIYQKYFLVVLWKILFSQATECIWENAMTKKETRPDLMKIISLGRKGIIDPDYMERWGQFKEDWTEADVATWNNLKEKMTVSNSGELEFCPPPSSSEKVWAKKFILRAEERGLC
B3_GZBA_v_NODE_2784_len_9992_cov_18_140612B3_GZBA_v_00034770F079367MPINLDKVAAKIKKMLTRGDVARDAAWYKDNIAWWMGRYETLITTEAEAVVRKAMAKLNQAVALRDEGINLVEQLDRDIIEAEHEVKRLGGDAFIENSEPMIKELKVYFDNLYESLKRPQPEEVEK
B3_GZBA_v_NODE_34913_len_1205_cov_7_200830B3_GZBA_v_00028150F014092MKKVLIVLVLIMAVMVVNAQVINTTDSTRTVVKVADLQKAITDNIAKDYVGYTIKEATSVTENNIVTFEVVVVKGTATEVLVY
B3_GZBA_v_NODE_3562_len_2179_cov_11_826526B3_GZBA_v_00158200F092929MRGGKYYFSVARSDPSPKSDRKSPNSQSKKINGVKRKKIRRPNNFKSDDWYEKAALSMTISANGQR
B3_GZBA_v_NODE_3713_len_941_cov_13_595112B3_GZBA_v_00184520F015231MRLREPKGDRSAGQKSAEGIVGHDVGKASEALRNRKVESTDRPIRERWSKA
B3_GZBA_v_NODE_41937_len_714_cov_5_201681B3_GZBA_v_00074460F024934KKIIKMRVRYVLEQSQGQILDEKKIKNIADKVRQGENNRAVADEIKKLTLNGIEKAKPLLKDVVKQLLDEYAQSIKEITDEAILEMVSGEIQKMAEEQAEK
B3_GZBA_v_NODE_47712_len_19735_cov_18_309046B3_GZBA_v_00329570F106196MTQDDKNETIKCTVSCPECGAEMICTHEDSKHEEKHRCEKGHVWA
B3_GZBA_v_NODE_4886_len_646_cov_10_162539B3_GZBA_v_00213280F054136MIENKAQLLADLAYVGSKVQAKTNVYLFSGAAFQWHGLKDATKDIDICCSYEEADRIVSVLRMFGRMESVTGINDIHFLRIFLKSFALQIFIKEIWMGDEYQLLEAAHCDSLTFDGITFLIPDIKTLIMIKDRQIQALYNEWKKLKGEMCI
B3_GZBA_v_NODE_6702_len_1326_cov_15_801660B3_GZBA_v_00275340F036991SEASNMSGIVARNLSGLIWSPMEVPDETDRDVTGDPGDAI
B3_GZBA_v_NODE_7326_len_1014_cov_11_917160B3_GZBA_v_00220290F041148MLVIYVAVSHRVTCNGPAIKGVSVAERVKAGAVKPNRGRVPVPAGKSEAWRGFCRQVASFLSFTSVAVQGLLGAGHLSPYTGLIESSGAVTVMSPYTVFS
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