Scaffold ConsensusfromContig31470

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ConsensusfromContig31470

Scaffold ConsensusfromContig31470

Overview

Basic Information
Taxon OID	2140918007 Open in IMG/M
Scaffold ID	ConsensusfromContig31470 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1242
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049308	Metagenome	147	Y
F066982	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
A_all_C_01459770	F066982	GGA	MIYTGFSMDPQTFEDSPIEQMDPVECPACRQMHRWNKKDARFERDPNE
A_all_C_01459780	F049308	N/A	YVVMSILINGSSAPVRAEPARAPQYVEAPEITPEPTTEAVNEPAMAIGILPPAVASTPAASTASSALINIKVADTKGASIQARESLQYAFVLPETDQKCKLVGSTRGIGGFGRNIEIFLLTDDDYLFWHANPAAIPPSEWETFRGSETTLDYALRGPGTYHFVVSNQMSPTPQTVAVKAQVKCAR

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