NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Baltic_Sea__contig32207

Scaffold Baltic_Sea__contig32207


Overview

Basic Information
Taxon OID2149837002 Open in IMG/M
Scaffold IDBaltic_Sea__contig32207 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterRoyal Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)59.888937Long. (o)24.847412Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003299Metagenome / Metatranscriptome495N
F003327Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
Baltic_Sea_00675440F003299AGAAGMYKVVYKTFDYWGGPVKLVTRIIEAYDPQHVQQLIQKNDDLIMLIEEI
Baltic_Sea_00675450F003327N/AAIADGNYTHQKYLRFRTWYFKSHKGSMRNAARDFKMFDLMYGLDINIKREDNEDV

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