Scaffold CHXX__Locus3405v1rpkm68_55

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold CHXX__Locus3405v1rpkm68_55

Scaffold CHXX__Locus3405v1rpkm68_55

Overview

Basic Information
Taxon OID	2149837027 Open in IMG/M
Scaffold ID	CHXX__Locus3405v1rpkm68_55 Open in IMG/M
Source Dataset Name	Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-1 Below Plume
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	647
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Subsurface Plume → Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.716667	Long. (^o)	-88.466667	Alt. (m)		Depth (m)	1300
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004471	Metagenome / Metatranscriptome	437	Y

Sequences

Protein ID	Family	RBS	Sequence
CHXX_0090.00000600	F004471	N/A	GALIELDDSRGSIKAVVNMNGQKLAGQAIKVSFTKIDLAGMKNDKKSKDLREAKENWRFSNNKEAKFRKMCLSRLKKLSSSITVLNIPEGKSDLVKKHIIESGYTVKSIEGSRRPDDKDKPKPSTGYTVAFVELASVEEAIAAVANLHNTWPKKFGTMKNDGYGNARGLVFALGGVKQEQLEKSKA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.