NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F1BAP7Q01A4KXO

Scaffold F1BAP7Q01A4KXO


Overview

Basic Information
Taxon OID2170459005 Open in IMG/M
Scaffold IDF1BAP7Q01A4KXO Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035648Metagenome171Y
F067977Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
E41_08564490F067977N/AGSFHDSTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLSQLQERNPFQ
E41_08564500F035648AGGAMNKHSILKTSLDTFDGDAISRADREFLDGLSDHPLVRHPLYSVPPPPRPNYEGCATIDDRAEAQRACFPAALDWMLVNYAYTTDAFMGKGGIISLVDGKFATIASLRGFMQ

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